View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6387_low_1 (Length: 539)
Name: NF6387_low_1
Description: NF6387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6387_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 10 - 336
Target Start/End: Complemental strand, 32768064 - 32767738
Alignment:
| Q |
10 |
aagaatatgcattgaatactaatataggttaaacatggtgtggtcctgcatcttcatcaagagtttactcaattcaatagaaagagagaagaaggacata |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32768064 |
aagaaaatgcattgaatactaatataggttaaacatggtgtggtcctgcatcttcatgaagagtttactcaattcaatagaaagagagaagaaggacata |
32767965 |
T |
|
| Q |
110 |
agatatcctatcctatgatcctaactccaaagttgaatgataaccaaaataataagtgggtcaaggttacttcaaaagaagggtcttgaccatgcattaa |
209 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32767964 |
acatatcctatcctatgatcctaactccaaagttgaatgataaccaaaataataagtgggtcaaggttacttcaaaagaagggtcttgaccatgcattaa |
32767865 |
T |
|
| Q |
210 |
ccactacttgacaaaactgatactactaaatgtgcattatggaaacaggaaagcagattgtataaatactactccttcaataaataattcaataactttt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32767864 |
ccactacttgacaaaactgatactactaaatgtgcattatggaaacaggaaagcagattgtataaatactactccttcaataaagaattcaataactttt |
32767765 |
T |
|
| Q |
310 |
ctttttcattgcgggtttgtatcaatt |
336 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
32767764 |
ctttttcattgcgggtttgtatcaatt |
32767738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 333 - 523
Target Start/End: Complemental strand, 32767701 - 32767511
Alignment:
| Q |
333 |
aatttattattaatcattttttcatgaaaaaatatattgttaataatannnnnnnaatgttctacagatttttccaatgaaggtggttctatttgatgca |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||| || || ||||| ||||| |
|
|
| T |
32767701 |
aatttattattaatcattttttcatgaaaaaatatattgttaataatatttttttaatgttctacaaattttttcaatgaagatgattttattttatgca |
32767602 |
T |
|
| Q |
433 |
cagacaaacactaaatatgaagatatctttcgatcgaattttggttcgtacattgcaagagttttaccccttacataagatccaactttgt |
523 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
32767601 |
cagataaacattaaatatgaagatatctttcgatcgaattttggttcgtacattgtaagagttttaccccttacctaagatccaactttgt |
32767511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University