View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6387_low_3 (Length: 370)
Name: NF6387_low_3
Description: NF6387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6387_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 55356520 - 55356165
Alignment:
| Q |
1 |
agcgcataagagattcaagactaagaacacccgaattacaatacagccaattgaggagaaagagaacnnnnnnnntaaaggtgaatgatgcagaattgtt |
100 |
Q |
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| T |
55356520 |
agcgcataagagattcaagactaagaacacccgaattacaatacagccaattgaggagaaagagaacaaaaaaa-taaaggtgaatgatgcagaattgtt |
55356422 |
T |
|
| Q |
101 |
ctaaaatgaaccagaatatttgagttgaaaaacaaaggacataagataagcctgtttatagtggtatgaaagcaagaaatgttcaatttggatggaaagc |
200 |
Q |
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| T |
55356421 |
ctaaaatgaaccagaatatttgagttgaaaaacaaaggacataagataagcctgtttatagtggtatgaaagcaagaaatgttcaatttggatggaaagc |
55356322 |
T |
|
| Q |
201 |
agcattgtattgtataaaataatataatatgaaaccaagttttagggatggataatgagaaaaatacctgactagaaatataaccacagcgttcacaaat |
300 |
Q |
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| T |
55356321 |
agcattgtattgt-----ataatataatatgaaaccaagttttagggatgg-taatgagaaaaatacctgactagaaatataaccacagcgttcacaaaa |
55356228 |
T |
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| Q |
301 |
tccctgttcaggcattttggtagtcgtagaaatcctgaaattctcccctgatttgatgatgtc |
363 |
Q |
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| T |
55356227 |
tccctgttcaggcattttggtggtcgtagaaatcctgaaattctcccctgatttgatgatgtc |
55356165 |
T |
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