View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6388_high_2 (Length: 255)
Name: NF6388_high_2
Description: NF6388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6388_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 39856707 - 39856486
Alignment:
| Q |
17 |
ggaagagaaaaacaaaattattatagctgaagaaaggaatgttgtcaaaaatactgaagctcaacagtcaaaagtggatatagagaccacttatgatgaa |
116 |
Q |
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| T |
39856707 |
ggaagagaaaaacaaaattattatagctgaagaaaggaatgttgtcaaaaatactgaagctcaacagtcaaaagtggatatagagaccacttatgatgaa |
39856608 |
T |
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| Q |
117 |
ggtaccaacaaagccaacactttaaaatttgtcagcaaagacttgaaagaaattgatgctatgatagatgaggatgtcattggtgcgatcgacagagtgt |
216 |
Q |
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| T |
39856607 |
ggtaccaacaaagccaacactttaaaatttgtcagcaaagacttgaaagaaattgatgctatgatagatgaggatgtcattggtgcgatcgacagagtgt |
39856508 |
T |
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| Q |
217 |
tatcagaagggattactctttc |
238 |
Q |
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| T |
39856507 |
tatcagaagggattactctttc |
39856486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 148 - 238
Target Start/End: Complemental strand, 39897150 - 39897060
Alignment:
| Q |
148 |
tcagcaaagacttgaaagaaattgatgctatgatagatgaggatgtcattggtgcgatcgacagagtgttatcagaagggattactctttc |
238 |
Q |
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| T |
39897150 |
tcagcatagacttggaagaaattgatgctatgatagatgaggatgtcattgctgcaatcgacagagttttatcagaagggattactctttc |
39897060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 112 - 238
Target Start/End: Original strand, 39737484 - 39737610
Alignment:
| Q |
112 |
atgaaggtaccaacaaagccaacactttaaaatttgtcagcaaagacttgaaagaaattgatgctatgatagatgaggatgtcattggtgcgatcgacag |
211 |
Q |
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| T |
39737484 |
atgaaggtaccagcaaatccaacacttcaaaattagtcagcatagactctgaagaatttgatgctatggtagatgaggatgtcattgcggcaattgacag |
39737583 |
T |
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| Q |
212 |
agtgttatcagaagggattactctttc |
238 |
Q |
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| T |
39737584 |
agttttatcggaagggattactctttc |
39737610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 38980370 - 38980450
Alignment:
| Q |
152 |
caaagacttgaaagaaattgatgctatgatagatgaggatgtcattggtgcgatcgacagagtgttatcagaagggattac |
232 |
Q |
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| T |
38980370 |
caaagacttgaaagaagttgatgctatgatagatgaggatgtcattgcttctatcaacagagttttatcagaagggattac |
38980450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 71 - 182
Target Start/End: Complemental strand, 39864020 - 39863909
Alignment:
| Q |
71 |
tgaagctcaacagtcaaaagtggatatagagaccacttatgatgaaggtaccaacaaagccaacactttaaaatttgtcagcaaagacttgaaagaaatt |
170 |
Q |
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| T |
39864020 |
tgaagctcaacagtcaaaagtggacttagagaccactaatgatgaaggtaccagcaaagccaacaattcaaaattcgtcggcatagactttgaaaaaatt |
39863921 |
T |
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| Q |
171 |
gatgctatgata |
182 |
Q |
| |
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||| ||||||| |
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| T |
39863920 |
aatgatatgata |
39863909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 86 - 228
Target Start/End: Complemental strand, 39863840 - 39863698
Alignment:
| Q |
86 |
aaaagtggatatagagaccacttatgatgaaggtaccaacaaagccaacactttaaaatttgtcagcaaagacttgaaagaaattgatgctatgatagat |
185 |
Q |
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||||||||| |||||||||||| | |||||||| ||| |||||||| | ||| | || ||||| |||||||||||| |||||||||||||||| | |
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| T |
39863840 |
aaaagtggacatagagaccactcacaatgaaggttccagcaaagccagctcttcacaaaaaatcagcctagacttgaaagatattgatgctatgataggt |
39863741 |
T |
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| Q |
186 |
gaggatgtcattggtgcgatcgacagagtgttatcagaaggga |
228 |
Q |
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|||||||| |||| ||| ||||||| ||| ||||| ||||||| |
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| T |
39863740 |
gaggatgttattgctgcaatcgacaaagttttatccgaaggga |
39863698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 39737408 - 39737477
Alignment:
| Q |
21 |
gagaaaaacaaaattattatagctgaagaaaggaatgttgtcaaaaatactgaagctcaacagtcaaaag |
90 |
Q |
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||||||||| ||| ||||||| | ||||||| ||||||| |||||| | |||||||||||||||||||| |
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| T |
39737408 |
gagaaaaacgaaaatattatatccgaagaaacaaatgttgacaaaaacattgaagctcaacagtcaaaag |
39737477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 109 - 233
Target Start/End: Complemental strand, 32827097 - 32826973
Alignment:
| Q |
109 |
atgatgaaggtaccaacaaagccaacactttaaaatttgtcagcaaagacttgaaagaaattgatgctatgatagatgaggatgtcattggtgcgatcga |
208 |
Q |
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||||| ||||||||| ||||| |||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||| || ||| ||| || || |
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| T |
32827097 |
atgattaaggtaccagcaaaggcaacacttcaaagtttgtcagcaaagactttgaagaaattgatgctatgatagatgaggacgttgttgctgcaattga |
32826998 |
T |
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| Q |
209 |
cagagtgttatcagaagggattact |
233 |
Q |
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|||||| |||| ||||||||||||| |
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| T |
32826997 |
cagagttttattagaagggattact |
32826973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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