View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6388_low_1 (Length: 446)
Name: NF6388_low_1
Description: NF6388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6388_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 55 - 436
Target Start/End: Original strand, 38595032 - 38595413
Alignment:
| Q |
55 |
cttaaaagtatacacaaccacatcaaggatttataggttgtagttaaagttacatttgtgtgctcgtagggctagggaattaatgtacatgagggaatga |
154 |
Q |
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| T |
38595032 |
cttaaaagtatacacaatcacatcaaggatttataggttgtagttaaagttacatttgtgtgctcgtagggcaagggaattaatgtacatgagggaatga |
38595131 |
T |
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| Q |
155 |
tttattttatacgttattaaaattaaaatgaaaaaacaagattttaatcgttacttcatccggttctatttatccgataaagttgaatcaagaaaagtta |
254 |
Q |
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| T |
38595132 |
tttattttatacgttattaaaattaaaatgaaaaaacaagattttaatcgttacttcatccaattctatttatccgataaagttgagttaacaaaagtta |
38595231 |
T |
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| Q |
255 |
atgtatttaaattgaatttagaatcaaatacaccactttttattgatccaactannnnnnnnataaataggtcagaataaaatatatctgaaataacata |
354 |
Q |
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| T |
38595232 |
atgtatttagattgaatttagaatcaaatacatcactttttattgatctaactattttttttataaataggtccgaataaaatatatctgaaataacata |
38595331 |
T |
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| Q |
355 |
attgaatttagagaaaattacattaacttccccacgcatacccctctagtttgaaaaaagcactcatctagtctaccctatg |
436 |
Q |
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| T |
38595332 |
attgaatttagagaaaattacattaacttccccacgcatacccctctagtttgaaaaaagcactcatctagtctaccctatg |
38595413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 301
Target Start/End: Complemental strand, 35585405 - 35585341
Alignment:
| Q |
237 |
ttgaatcaagaaaagttaatgtatttaaattgaatttagaatcaaatacaccactttttattgat |
301 |
Q |
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| T |
35585405 |
ttgaatcaacaaaagttaatgtatttaaactaaactttaaatcaaatacatcaatttttgttgat |
35585341 |
T |
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