View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6389_high_6 (Length: 320)
Name: NF6389_high_6
Description: NF6389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6389_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 18688079 - 18688387
Alignment:
| Q |
1 |
tattcaacaaagtacctctgtgcaactccctgtttttcgtatctgactataaatcagaaaacagatgtcctcaacatgttcaaaatgaacctggagaaat |
100 |
Q |
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| T |
18688079 |
tattcaacaaagtacctctgaacaactccctgtttttcg-atctgactataaatcagaaaacagatgtcctcaacatgttcaaaatgaacctggagaaat |
18688177 |
T |
|
| Q |
101 |
gagtgatgcagtaactggccttgttgttgaagagcagacacaatctgttcctgctcaagtaactcaaattcggtgaatgagctattggatccaccttctg |
200 |
Q |
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| T |
18688178 |
gagtgatgcagtaactggccttgttgctgaagagcagacacaatctgttcctgctcaagtaactcaaactcggtgaatgagctattggatccaccttctg |
18688277 |
T |
|
| Q |
201 |
gcgaaaagtattagtttctcaaaacaaacctggtgaaatgtttgatgcagtaactggccttgttgaagaccaaacgcaatctgttcctgctcaagtaaac |
300 |
Q |
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| T |
18688278 |
gcgaaaagtattagtttctcaaaacaaacctggtgaaatgtttgatgcagtaactggccttgttgaagaccaaacgcaatctgttcctgctcaagtgaac |
18688377 |
T |
|
| Q |
301 |
acaggttctg |
310 |
Q |
| |
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|||| ||||| |
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| T |
18688378 |
acagattctg |
18688387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 90 - 296
Target Start/End: Original strand, 48447861 - 48448072
Alignment:
| Q |
90 |
cctggagaaatgagtgatgcagtaactggccttgttgttgaagagcagacacaatctgttcctgctcaagt-aactcaaattcggtgaatgagctattgg |
188 |
Q |
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| T |
48447861 |
cctggagaaatgagagatgcagtaactacccttgttg---aagaacaaccacaacccgttcctgttcaagtgaaatcaaattctgtgaatgagctattgg |
48447957 |
T |
|
| Q |
189 |
atccaccttctgg--------cgaaaagtattagtttctcaaaacaaacctggtgaaatgtttgatgcagtaactggccttgttgaagaccaaacgcaat |
280 |
Q |
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| T |
48447958 |
atccaccttctggagatgttgcgaaaaatattagtt-ctcaaaacgaacctggtgaaactagtgatgcagttactggccttgttgaagaccaaacacaat |
48448056 |
T |
|
| Q |
281 |
ctgttcctgctcaagt |
296 |
Q |
| |
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|||||||||||||||| |
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| T |
48448057 |
ctgttcctgctcaagt |
48448072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 48447995 - 48448072
Alignment:
| Q |
80 |
tcaaaatgaacctggagaaatgagtgatgcagtaactggccttgttgttgaagagcagacacaatctgttcctgctcaagt |
160 |
Q |
| |
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|||||| |||||||| |||| ||||||||||| ||||||||||||| |||| || ||||||||||||||||||||||| |
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| T |
48447995 |
tcaaaacgaacctggtgaaactagtgatgcagttactggccttgttg---aagaccaaacacaatctgttcctgctcaagt |
48448072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 163 - 296
Target Start/End: Original strand, 18718408 - 18718548
Alignment:
| Q |
163 |
ctcaaattcggtgaatgagctattggatccaccttctgg--------cgaaaagtattagtttctcaaaacaaacctggtgaaatgtttgatgcagtaac |
254 |
Q |
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||||||||| |||||| |||||||||||||||||||||| |||||| |||||||| ||||||| || |||||||| | ||||||||| || |
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| T |
18718408 |
ctcaaattctgtgaatcagctattggatccaccttctggagatgttgcgaaaaatattagtt-ctcaaaatgaatatggtgaaacgagtgatgcagttac |
18718506 |
T |
|
| Q |
255 |
tggccttgttgaagaccaaacgcaatctgttcctgctcaagt |
296 |
Q |
| |
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|||||||||| |||||||||| |||| ||||||||||||||| |
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| T |
18718507 |
tggccttgttaaagaccaaacacaatttgttcctgctcaagt |
18718548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 18718471 - 18718548
Alignment:
| Q |
80 |
tcaaaatgaacctggagaaatgagtgatgcagtaactggccttgttgttgaagagcagacacaatctgttcctgctcaagt |
160 |
Q |
| |
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|||||||||| ||| |||| |||||||||||| ||||||| ||||| |||| || ||||||| ||||||||||||||| |
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| T |
18718471 |
tcaaaatgaatatggtgaaacgagtgatgcagttactggcc---ttgttaaagaccaaacacaatttgttcctgctcaagt |
18718548 |
T |
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