View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6389_low_1 (Length: 674)

Name: NF6389_low_1
Description: NF6389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6389_low_1
NF6389_low_1
[»] chr4 (4 HSPs)
chr4 (18-392)||(20006076-20006449)
chr4 (411-654)||(20007672-20007917)
chr4 (607-653)||(49622533-49622579)
chr4 (570-609)||(54078461-54078500)
[»] chr1 (4 HSPs)
chr1 (18-392)||(14123917-14124289)
chr1 (411-654)||(14122451-14122694)
chr1 (570-609)||(41698450-41698489)
chr1 (570-609)||(41704044-41704083)
[»] chr7 (3 HSPs)
chr7 (19-392)||(35050957-35051329)
chr7 (418-653)||(35048778-35049012)
chr7 (415-652)||(15635878-15636115)
[»] chr3 (2 HSPs)
chr3 (411-654)||(53325164-53325407)
chr3 (13-208)||(53324287-53324485)
[»] chr5 (2 HSPs)
chr5 (541-642)||(9284809-9284910)
chr5 (570-609)||(23556713-23556752)
[»] chr2 (1 HSPs)
chr2 (533-594)||(1177994-1178055)
[»] chr6 (1 HSPs)
chr6 (287-333)||(8532270-8532316)


Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 20006076 - 20006449
Alignment:
Q  18 atgatggtttatcaatcatatggtgttgtgcctacnnnnnnncacataaatgtaagaattggtgatttatattaaatcttgactatatcagtaggagaaa 117  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20006076 atgatggtttatcaatcatatggtgttgtgcctacaaaaaa-cacataaatgtaagaattggtgatttatattaaatcttgactatatcagtaggagaaa 20006174  T
Q  118 gnnnnnnnggaaccaatacctttaaaagttctgaacatgtaatattatgatttatgctttcagaataatatgggacctgttaaacaaatatactgaatca 217  Q
    |       |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  20006175 gaaaaaaaggaaccaatacctttaaaagttatgaacatgtaatattatgatttatgctttcagaataatatgggacctgttaaacaaatatattgaatca 20006274  T
Q  218 aaaacttccataatatgaatataaatgttcaaccaaaagtaaagagtgcttttatttatttggacctgatttacttcaacaaaatatttttgatttcgat 317  Q
     |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  20006275 gaaacttccataatatgaatataaatgttcaaccaaaagtaaagagtacttttatttatttggacctgatttacttcaacaaaatatttttgatttggat 20006374  T
Q  318 tgaagggagctaaatttgcttaaattctctcttgtgtgccaatcccatcaatgatctgagatgtagaaaactcag 392  Q
    ||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  20006375 tgaagggagctaaatttgcttgaattctctattgtgtgtcaatcccatcaatgatctgagatgtagaaaactcag 20006449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 411 - 654
Target Start/End: Original strand, 20007672 - 20007917
Alignment:
Q  411 gactgacacatatttactctagccatacattgtgctcttgtgatgggatttggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtac 510  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  20007672 gactgacacatatttactctagccatacattgtgctcttatgataggatttggtttcaaaaggttctttgtgttactcacatagcttcttgcacaagtac 20007771  T
Q  511 atcctagagtaaag--nnnnnnncttccatcctttgcatattttgaattgattttaacagttccaaaacccatacatctagcataactcttgtaatattt 608  Q
    ||||||||||||||          ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |    
T  20007772 atcctagagtaaagtattttttttttccatcctttgcattttttgaattgattttaacagttccaaaacccatacatctagcatagctcttataatatct 20007871  T
Q  609 ggtaatttcttcttcaaaactaaatgtcatcccaatcctaggttct 654  Q
    ||||| |||||||||| || ||||||||||||||||||||| ||||    
T  20007872 ggtaacttcttcttcataattaaatgtcatcccaatcctagattct 20007917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 607 - 653
Target Start/End: Complemental strand, 49622579 - 49622533
Alignment:
Q  607 ttggtaatttcttcttcaaaactaaatgtcatcccaatcctaggttc 653  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||    
T  49622579 ttggtaacttcttcttcagaactaaatgtcatcccaatcctaggttc 49622533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 570 - 609
Target Start/End: Original strand, 54078461 - 54078500
Alignment:
Q  570 tccaaaacccatacatctagcataactcttgtaatatttg 609  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  54078461 tccaaaacctatacatctagcataattcttgtaatatttg 54078500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 292; Significance: 1e-163; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 14124289 - 14123917
Alignment:
Q  18 atgatggtttatcaatcatatggtgttgtgcctacnnnnnnncacataaatgtaagaattggtgatttatattaaatcttgactatatcagtaggagaaa 117  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14124289 atgatggtttatcaatcatatggtgttgtgcctacaaaaa--cacataaatgtaagaattggtgatttatattaaatcttgactatatcagtaggagaaa 14124192  T
Q  118 gnnnnnnnggaaccaatacctttaaaagttctgaacatgtaatattatgatttatgctttcagaataatatgggacctgttaaacaaatatactgaatca 217  Q
    |       |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14124191 gaaaaaaaggaaccaatacctttaaaagttatgaacatgtaatattatgatttatgctttcagaataatatgggacctgttaaacaaatatattgaatca 14124092  T
Q  218 aaaacttccataatatgaatataaatgttcaaccaaaagtaaagagtgcttttatttatttggacctgatttacttcaacaaaatatttttgatttcgat 317  Q
     |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  14124091 gaaacttccataatatgaatataaatgttcaacaaaaagtaaagagtacttttatttatttggacctgatttacttcaacaaaatatttttgatttggat 14123992  T
Q  318 tgaagggagctaaatttgcttaaattctctcttgtgtgccaatcccatcaatgatctgagatgtagaaaactcag 392  Q
    ||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  14123991 tgaagggagctaaatttgcttgaattctctattgtgtgtcaatcccatcaatgatctgagatgtagaaaactcag 14123917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 411 - 654
Target Start/End: Complemental strand, 14122694 - 14122451
Alignment:
Q  411 gactgacacatatttactctagccatacattgtgctcttgtgatgggatttggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtac 510  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  14122694 gactgacacatatttactctagccatacattgtgctcttatgataggatttggtttcaaaaggttctttgtgttactcacatagcttcttgcacaagtac 14122595  T
Q  511 atcctagagtaaagnnnnnnncttccatcctttgcatattttgaattgattttaacagttccaaaacccatacatctagcataactcttgtaatatttgg 610  Q
    ||||||||||||||        ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  14122594 atcctagagtaaagtattttttttccatcctttgcattttttgaattgattttaacagttccaaaacccatacatctagcatagctcttataatatttgg 14122495  T
Q  611 taatttcttcttcaaaactaaatgtcatcccaatcctaggttct 654  Q
    ||| |||||||||| || ||||||||||||||||||||| ||||    
T  14122494 taacttcttcttcagaattaaatgtcatcccaatcctagattct 14122451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 570 - 609
Target Start/End: Complemental strand, 41698489 - 41698450
Alignment:
Q  570 tccaaaacccatacatctagcataactcttgtaatatttg 609  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  41698489 tccaaaacctatacatctagcataattcttgtaatatttg 41698450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 570 - 609
Target Start/End: Complemental strand, 41704083 - 41704044
Alignment:
Q  570 tccaaaacccatacatctagcataactcttgtaatatttg 609  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  41704083 tccaaaacctatacatctagcataattcttgtaatatttg 41704044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 235; Significance: 1e-129; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 19 - 392
Target Start/End: Complemental strand, 35051329 - 35050957
Alignment:
Q  19 tgatggtttatcaatcatatggtgttgtgcctacnnnnnnncacataaatgtaagaattggtgatttatattaaatcttgactatatcagtaggagaaag 118  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||| |||||||||||||| |||||||| |||| ||  ||||||    
T  35051329 tgatggtttatcaatcatatggtgttgtgcctacaaaaaa-cacataaatgtaagaattgctgatttatattaaaacttgactagatcactaacagaaag 35051231  T
Q  119 nnnnnnnggaaccaatacctttaaaagttctgaacatgtaatattatgatttatgctttcagaataatatgggacctgttaaacaaatatactgaatcaa 218  Q
           |||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||  |||| |||||||     
T  35051230 aaaagaaggaaccgatacctctaaaagttctgaacatgtaatattatgatttatgctttgagaatagtatgggacctgttaaacatttatattgaatcag 35051131  T
Q  219 aaacttccataatatgaatataaatgttcaaccaaaagtaaagagtgcttttatttatttggacctgatttacttcaacaaaatatttttgatttcgatt 318  Q
    | |||||||||||||||||| |||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35051130 atacttccataatatgaatagaaatgttcaaacaaaagtaaagagtgcttgaatttatttggacctgatttacttcaacaaaatatttttgatttggatt 35051031  T
Q  319 gaagggagctaaatttgcttaaattctctcttgtgtgccaatcccatcaatgatctgagatgtagaaaactcag 392  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  35051030 gaagggagctaaatttgcttgaattctctgttgtgtgccaatcccatcaatgatttgagatgtagaaaactcag 35050957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 418 - 653
Target Start/End: Complemental strand, 35049012 - 35048778
Alignment:
Q  418 acatatttactctagccatacattgtgctcttgtgatgggatttggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtacatcctag 517  Q
    |||||||||||||||||||||| ||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35049012 acatatttactctagccatacactgtgctcttatggtaggatttggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtacatcctag 35048913  T
Q  518 agtaaagnnnnnnncttccatcctttgcatattttgaattgattttaacagttccaaaacccatacatctagcataactcttgtaatatttggtaatttc 617  Q
    |||||||        ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||    
T  35048912 agtaaagtattttt-ttccatcctttgcattttttgaattgattttaacagttccaaaacccatacatctagcatagctcttgtaatatttgataacttc 35048814  T
Q  618 ttcttcaaaactaaatgtcatcccaatcctaggttc 653  Q
    ||||||| ||||||||||||||||||||||||||||    
T  35048813 ttcttcagaactaaatgtcatcccaatcctaggttc 35048778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 415 - 652
Target Start/End: Original strand, 15635878 - 15636115
Alignment:
Q  415 gacacatatttactctagccatacattgtgctcttgtgatgggatttggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtacatcc 514  Q
    ||||||| ||||||||||||||||||||||||||| || | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15635878 gacacatgtttactctagccatacattgtgctcttatggtagggtttggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtacatcc 15635977  T
Q  515 tagagtaaagnnnnnnncttccatcctttgcatattttgaattgattttaacagttccaaaacccatacatctagcataactcttgt-aatatttggtaa 613  Q
    ||||||||||        ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  15635978 tagagtaaagtattttt-ttccatcctttgcatttttttaattgattttaacagttccaaaacccatacatctagcataactcttgtaaatatttggtaa 15636076  T
Q  614 tttcttcttcaaaactaaatgtcatcccaatcctaggtt 652  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  15636077 tttcttcttcataactaaatgtcatcccaatcctaggtt 15636115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 183; Significance: 1e-98; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 411 - 654
Target Start/End: Original strand, 53325164 - 53325407
Alignment:
Q  411 gactgacacatatttactctagccatacattgtgctcttgtgatgggatttggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtac 510  Q
    ||||||||||||||||||||||| ||||||||||||||| || | ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  53325164 gactgacacatatttactctagctatacattgtgctcttatggtaggatttggtctcaaaaggttctttgagttactcacatagcttcttgcacaagtac 53325263  T
Q  511 atcctagagtaaagnnnnnnncttccatcctttgcatattttgaattgattttaacagttccaaaacccatacatctagcataactcttgtaatatttgg 610  Q
    ||||||||||||||        ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53325264 atcctagagtaaagtattttttttccatcctttgcattttttgaattgattttaacagttccaaaacccatacatctagcataactcttgtaatatttgg 53325363  T
Q  611 taatttcttcttcaaaactaaatgtcatcccaatcctaggttct 654  Q
    |||||||||||||| || ||||||||||||||||||||||||||    
T  53325364 taatttcttcttcagaattaaatgtcatcccaatcctaggttct 53325407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 53324287 - 53324485
Alignment:
Q  13 tcatcatgatggtttatcaatcatatggtgttgtgcctacnnnnnnncacataaatgtaagaattggtgatttatattaaatcttgactatatcagtagg 112  Q
    |||| |||||||||||||||||||||||||||||||||||        ||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  53324287 tcattatgatggtttatcaatcatatggtgttgtgcctacaaaaa---acacaaatgtaagaattggtgatttatattacatcttgactatatcagtagg 53324383  T
Q  113 agaaagnnnnnnng------gaaccaatacctttaaaagttctgaacatgtaatattatgatttatgctttcagaataatatgggacctgttaaacaaat 206  Q
    ||| ||       |      |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  53324384 agagagagagagagaaaaaggaaccaatacctctaaaagttctgaacatgtaatattatgatttatgctttgagaataatatggaacctgttaaacaaat 53324483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 541 - 642
Target Start/End: Original strand, 9284809 - 9284910
Alignment:
Q  541 tttgcatattttgaattgattttaacagttccaaaacccatacatctagcataactcttgtaatatttggtaatttcttcttcaaaactaaatgtcatcc 640  Q
    ||||||| ||||||||| |||||| |  ||||||| |||||||||| | ||||| ||||||||||| ||||||||||||||||  |||||||||||||||    
T  9284809 tttgcattttttgaatttattttaccgattccaaagcccatacatcaaacataattcttgtaatatgtggtaatttcttcttcggaactaaatgtcatcc 9284908  T
Q  641 ca 642  Q
    ||    
T  9284909 ca 9284910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 570 - 609
Target Start/End: Complemental strand, 23556752 - 23556713
Alignment:
Q  570 tccaaaacccatacatctagcataactcttgtaatatttg 609  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  23556752 tccaaaacctatacatctagcataattcttgtaatatttg 23556713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 533 - 594
Target Start/End: Complemental strand, 1178055 - 1177994
Alignment:
Q  533 ttccatcctttgcatattttgaattgattttaacagttccaaaacccatacatctagcataa 594  Q
    ||||||| |||||||  ||| ||||||||||| || |||||||||||||||||| |||||||    
T  1178055 ttccatcatttgcattcttttaattgattttaccaattccaaaacccatacatcaagcataa 1177994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 287 - 333
Target Start/End: Original strand, 8532270 - 8532316
Alignment:
Q  287 tttacttcaacaaaatatttttgatttcgattgaagggagctaaatt 333  Q
    ||||||||| |||||| || ||||||| |||||||||||||||||||    
T  8532270 tttacttcagcaaaatgttcttgatttggattgaagggagctaaatt 8532316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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