View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6389_low_10 (Length: 272)
Name: NF6389_low_10
Description: NF6389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6389_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 34514823 - 34515087
Alignment:
| Q |
1 |
gagggaataaatccttaatttcttttgttatatatagtagtaatttaatactaataaatcaacccggatcacacgacattacccataaaagtttaatata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
34514823 |
gagggaataaatccttaatttcttttgttatatatagtagtaatttaatactaataaatcaacccggatcacaagacattacccataaaagtttaattta |
34514922 |
T |
|
| Q |
101 |
atacgacaacatttgctgaaaaaatacttcaagcacatggaatgtcatgtaagttcattttgtcccgtgacatgctgca----------gagtggaacac |
190 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34514923 |
atacgacaacatttgcggaaaaaatacttcaagcacatggaatgtcatgtaagttcattttgtcccgtgacatgctgcagagtgccgacgagtggaacac |
34515022 |
T |
|
| Q |
191 |
aaaataacaatttaatccactcaataatgtatttttcccataaacaaccctctaaatttcaaacc |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34515023 |
aaaataacaatttaatccactcaataatgtatttttcccataaacaaccctctaaatttcaaacc |
34515087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University