View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6389_low_3 (Length: 469)
Name: NF6389_low_3
Description: NF6389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6389_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 146 - 460
Target Start/End: Original strand, 15563258 - 15563559
Alignment:
| Q |
146 |
gtcaatttggataaggatagtacaccatgaaatgcatgtgtataatatttgttaagtaaattgaatttatggttgtttttgatggaaaagtaagggttac |
245 |
Q |
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| T |
15563258 |
gtcaatttggataaggatagtacaccattaaatgcatgtgtag--tatttgttaagtaaattgaatttatggttgtttttgatggaaaagtaagggttac |
15563355 |
T |
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| Q |
246 |
tcattttttgagcaacaaagaattaacaattgggaataaaaatatttaaagtacaagagatactcaaccaacatactcaatccacatacaattcatagat |
345 |
Q |
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| T |
15563356 |
tcattttttgagcaacaaagaattaacaattgggaataaaaatatttaaagtacaagagatactcaacca-------------acatacaattcatagat |
15563442 |
T |
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| Q |
346 |
caacactctactcccataatatgcagtgccctctttgtcttagcaaaatatatttccaatatttgatttga--atgtaacaactgtttcgagaaccttca |
443 |
Q |
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| T |
15563443 |
caacactctactcccataatatgcagtgccctctttgtcttagcaaaatatatttccaatatttgatttgaatatgtaacaactgtttcgagaaccttca |
15563542 |
T |
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| Q |
444 |
ccttcaatcttgatgat |
460 |
Q |
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| T |
15563543 |
ccttcaatcttgatgat |
15563559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 15563129 - 15563221
Alignment:
| Q |
17 |
acatccaaaagaccatgcacgcttgtggaaaagaacatacatacaaatgcatgctcatgatcacttccatggcttcttttagattcttgttat |
109 |
Q |
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| T |
15563129 |
acatccaaaagaccatgcacgcttgaggaaaagaacatacatacaaatgcatgctcatgatcacttccatggcttcttttagattcttgttat |
15563221 |
T |
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