View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6389_low_4 (Length: 406)

Name: NF6389_low_4
Description: NF6389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6389_low_4
NF6389_low_4
[»] chr4 (20 HSPs)
chr4 (7-185)||(4884237-4884415)
chr4 (158-252)||(21691160-21691254)
chr4 (9-105)||(4646033-4646141)
chr4 (140-228)||(1616457-1616544)
chr4 (143-241)||(16552009-16552107)
chr4 (147-241)||(39733577-39733671)
chr4 (181-252)||(45694657-45694728)
chr4 (140-231)||(53713492-53713582)
chr4 (183-252)||(8604595-8604664)
chr4 (183-252)||(35065106-35065175)
chr4 (192-252)||(32818352-32818412)
chr4 (152-252)||(39386676-39386776)
chr4 (164-252)||(45011917-45012005)
chr4 (152-241)||(33456426-33456515)
chr4 (140-211)||(2326300-2326371)
chr4 (140-175)||(4645939-4645974)
chr4 (149-199)||(37626132-37626182)
chr4 (191-252)||(26911788-26911849)
chr4 (191-228)||(52342023-52342060)
chr4 (191-252)||(53913558-53913619)
[»] chr2 (14 HSPs)
chr2 (152-252)||(33019098-33019198)
chr2 (152-241)||(22536052-22536141)
chr2 (152-248)||(13912834-13912930)
chr2 (143-228)||(15928391-15928476)
chr2 (181-247)||(11504033-11504099)
chr2 (179-240)||(43501178-43501239)
chr2 (140-248)||(9143022-9143130)
chr2 (191-239)||(16518834-16518882)
chr2 (149-227)||(38074477-38074555)
chr2 (139-231)||(6074467-6074558)
chr2 (191-226)||(680271-680306)
chr2 (183-252)||(33502280-33502346)
chr2 (152-250)||(33047524-33047622)
chr2 (196-252)||(42982587-42982643)
[»] chr1 (15 HSPs)
chr1 (151-252)||(34721781-34721882)
chr1 (140-241)||(30557556-30557657)
chr1 (139-252)||(3416123-3416236)
chr1 (152-252)||(2099629-2099730)
chr1 (152-252)||(38797572-38797671)
chr1 (191-252)||(1514386-1514447)
chr1 (183-252)||(7524156-7524225)
chr1 (152-252)||(3909904-3910004)
chr1 (140-252)||(45660536-45660647)
chr1 (204-252)||(30850393-30850441)
chr1 (205-252)||(47321902-47321949)
chr1 (152-248)||(6283190-6283286)
chr1 (183-247)||(32370004-32370068)
chr1 (140-252)||(35548832-35548944)
chr1 (101-145)||(36447631-36447675)
[»] chr6 (9 HSPs)
chr6 (144-252)||(3482089-3482197)
chr6 (140-252)||(4910951-4911063)
chr6 (152-252)||(25195308-25195408)
chr6 (140-252)||(16540150-16540262)
chr6 (201-252)||(17225895-17225946)
chr6 (152-245)||(4908013-4908105)
chr6 (152-208)||(28929622-28929678)
chr6 (191-260)||(8860538-8860608)
chr6 (152-216)||(6895892-6895956)
[»] chr5 (13 HSPs)
chr5 (152-252)||(42858151-42858251)
chr5 (152-252)||(18851024-18851124)
chr5 (140-252)||(38845486-38845599)
chr5 (178-251)||(36290079-36290152)
chr5 (140-228)||(38265000-38265089)
chr5 (157-248)||(5508316-5508403)
chr5 (206-252)||(10898764-10898810)
chr5 (157-247)||(13171708-13171797)
chr5 (210-251)||(5468818-5468859)
chr5 (149-250)||(11418780-11418879)
chr5 (204-252)||(11648125-11648171)
chr5 (203-252)||(28110431-28110480)
chr5 (140-252)||(27374224-27374336)
[»] scaffold0168 (1 HSPs)
scaffold0168 (140-252)||(31869-31984)
[»] chr8 (18 HSPs)
chr8 (183-248)||(32927939-32928004)
chr8 (152-257)||(32101111-32101216)
chr8 (183-252)||(35495033-35495102)
chr8 (151-252)||(38868786-38868887)
chr8 (201-252)||(38868541-38868592)
chr8 (157-252)||(13384595-13384696)
chr8 (193-252)||(40769350-40769409)
chr8 (191-257)||(32736500-32736566)
chr8 (191-252)||(4662884-4662945)
chr8 (191-252)||(16972045-16972106)
chr8 (179-236)||(37684464-37684521)
chr8 (156-252)||(6026995-6027091)
chr8 (152-231)||(36200072-36200150)
chr8 (152-199)||(44141002-44141049)
chr8 (194-252)||(5859047-5859105)
chr8 (152-222)||(7244523-7244592)
chr8 (191-252)||(40848060-40848121)
chr8 (182-250)||(2924822-2924890)
[»] scaffold0041 (1 HSPs)
scaffold0041 (152-227)||(45973-46047)
[»] chr7 (9 HSPs)
chr7 (152-227)||(40903971-40904045)
chr7 (183-253)||(45557407-45557477)
chr7 (192-252)||(42816450-42816510)
chr7 (157-250)||(24109504-24109597)
chr7 (140-252)||(40491621-40491733)
chr7 (142-185)||(4074220-4074263)
chr7 (183-251)||(17111889-17111957)
chr7 (183-242)||(40561731-40561790)
chr7 (152-240)||(45997743-45997832)
[»] chr3 (11 HSPs)
chr3 (156-252)||(25359520-25359616)
chr3 (152-248)||(52141190-52141286)
chr3 (191-252)||(31708220-31708281)
chr3 (201-251)||(43661883-43661933)
chr3 (152-236)||(46551209-46551294)
chr3 (163-252)||(52364094-52364183)
chr3 (203-257)||(4526170-4526224)
chr3 (140-225)||(21261240-21261324)
chr3 (183-252)||(35264384-35264453)
chr3 (140-254)||(40736466-40736582)
chr3 (183-252)||(41596122-41596191)
[»] scaffold0361 (1 HSPs)
scaffold0361 (183-252)||(14087-14156)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 7 - 185
Target Start/End: Original strand, 4884237 - 4884415
Alignment:
Q  7 aatttaactcatttcattttatgacgagtgacatcaacttcatcttaatctttaattggcgtaccgcaccaattacaagtccctaatacaggatcttagc 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4884237 aatttaactcatttcattttatgacgagtgacatcaacttcatcttcatctttaattggcgtaccgcaccaattacaagtccctaatacaggatcttagc 4884336  T
Q  107 ttgtgtttggttgtgtggcggtgatagttgattttgattctgtaaaattgattttggttaaaagtaattcaaactaaaa 185  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4884337 ttgtgtttggttgtgtggtggtgatagttgattttgattctgtaaaattgattttggttaaaagtaattcaaactaaaa 4884415  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 158 - 252
Target Start/End: Original strand, 21691160 - 21691254
Alignment:
Q  158 ttttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaat 252  Q
    |||||||||||||| ||||  |||| |||||| ||||||||| ||| |||||||||||| || ||||||||||| ||||||||||||||||||||    
T  21691160 ttttggttaaaagtgattctgactacaagtgatttgtgtttggatatattcatgtaaaagtgtgttgaactataaatttgtgtgtgaaaatcaat 21691254  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 4646141 - 4646033
Alignment:
Q  9 tttaactcatttcattttatgacgagtgacatcaacttcatctta------------atctttaattggcgtaccgcaccaattacaagtccctaataca 96  Q
    ||||||||||||||||||||||||||||||||||||||||| |||            ||| ||||||||| |||| ||||||||||||||||||||||||    
T  4646141 tttaactcatttcattttatgacgagtgacatcaacttcatattatgacagtagtacatcattaattggcctaccacaccaattacaagtccctaataca 4646042  T
Q  97 ggatcttag 105  Q
    |||||||||    
T  4646041 ggatcttag 4646033  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 140 - 228
Target Start/End: Complemental strand, 1616544 - 1616457
Alignment:
Q  140 ttgattctgtaaaattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaact 228  Q
    |||||| |||| |||||||||||||||||| |||||| ||||||| |||  ||||||||| |||||||||||||||| |||||||||||    
T  1616544 ttgattttgtagaattgattttggttaaaattaattctaactaaa-gtggtttgtgtttgaatacattcatgtaaaaatgagttgaact 1616457  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 143 - 241
Target Start/End: Complemental strand, 16552107 - 16552009
Alignment:
Q  143 attctgtaaaattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtg 241  Q
    ||||| || ||||||||||||||||||||||||   | |||| |||| ||| | ||| |||||||||||||||| |||||||||||||| |||||||||    
T  16552107 attctatataattgattttggttaaaagtaattatgattaaacgtgatttgagattggatacattcatgtaaaagtgagttgaactataaatttgtgtg 16552009  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 241
Target Start/End: Original strand, 39733577 - 39733671
Alignment:
Q  147 tgtaaaattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtg 241  Q
    |||| |||||||||||||||||||||||||  | ||||||||| ||||||||| ||||||| ||| ||||  |||||||||| || || ||||||    
T  39733577 tgtataattgattttggttaaaagtaattctgattaaaagtgatttgtgtttggatacatttatgaaaaaaggagttgaactttaaatgtgtgtg 39733671  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 252
Target Start/End: Complemental strand, 45694728 - 45694657
Alignment:
Q  181 taaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaat 252  Q
    |||| |||||||||||||| |||||||||||||||| |||||| ||||||| || ||||||| | |||||||    
T  45694728 taaacgtgagttgtgtttggatacattcatgtaaaaatgagttcaactataaatgtgtgtgttagaatcaat 45694657  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 231
Target Start/End: Original strand, 53713492 - 53713582
Alignment:
Q  140 ttgattctgtaaaattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactata 231  Q
    |||||| |||||||||||||||| ||||||||||||   ||||||  | | ||||||||| | |||||||||||||| ||||||||||||||    
T  53713492 ttgattatgtaaaattgattttg-ttaaaagtaattttgactaaacataatttgtgtttggacacattcatgtaaaagtgagttgaactata 53713582  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 8604595 - 8604664
Alignment:
Q  183 aaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaat 252  Q
    ||||||| || |||||| |||||||||||||||| ||  || ||||||| ||||||||||||||||||||    
T  8604595 aaagtgatttatgtttggatacattcatgtaaaagtgcattcaactataaatttgtgtgtgaaaatcaat 8604664  T

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Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 35065175 - 35065106
Alignment:
Q  183 aaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaat 252  Q
    ||||||| ||||||||| |||||||||||||||| ||||| ||  |||| |||||||||| |||||||||    
T  35065175 aaagtgatttgtgtttggatacattcatgtaaaagtgagtggagatataaatttgtgtgtaaaaatcaat 35065106  T

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Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 32818352 - 32818412
Alignment:
Q  192 tgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaat 252  Q
    |||||||| |||||||||||||||| | |||||||||||| |||||||||  |||||||||    
T  32818352 tgtgtttggatacattcatgtaaaagttagttgaactataaatttgtgtgcaaaaatcaat 32818412  T

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Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 152 - 252
Target Start/End: Complemental strand, 39386776 - 39386676
Alignment:
Q  152 aattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaa 251  Q
    |||||||||| ||||||||| |||   | ||||||||  || |||||  ||| |||||||||||| ||||||||||| || || ||||||||||||||||    
T  39386776 aattgatttttgttaaaagtgattttgattaaaagtggtttttgtttaaatatattcatgtaaaagtgagttgaactttaaatatgtgtgtgaaaatcaa 39386677  T
Q  252 t 252  Q
    |    
T  39386676 t 39386676  T

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Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 164 - 252
Target Start/End: Complemental strand, 45012005 - 45011917
Alignment:
Q  164 ttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaat 252  Q
    |||||||| ||||  ||||||||||  ||| ||||| |||||||||| ||||| |||||  || |||| ||||||||||||||||||||    
T  45012005 ttaaaagtgattctcactaaaagtggtttgggtttgaatacattcatataaaagtgagtaaaattataaatttgtgtgtgaaaatcaat 45011917  T

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Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 33456515 - 33456426
Alignment:
Q  152 aattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtg 241  Q
    ||||||||||||||||||||||||   || |||||| | || |||||| |||| ||  ||||||| ||| ||||||||||||||| ||||    
T  33456515 aattgattttggttaaaagtaattttgaccaaaagttatttatgtttgaatacttttgtgtaaaagtgaattgaactatagatttatgtg 33456426  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 140 - 211
Target Start/End: Original strand, 2326300 - 2326371
Alignment:
Q  140 ttgattctgtaaaattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatg 211  Q
    |||||| ||||||||||||||| ||||||||||||||  ||||||| ||  || |||||| ||| |||||||    
T  2326300 ttgattatgtaaaattgatttttgttaaaagtaattcggactaaaaatggtttttgtttggataaattcatg 2326371  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 140 - 175
Target Start/End: Complemental strand, 4645974 - 4645939
Alignment:
Q  140 ttgattctgtaaaattgattttggttaaaagtaatt 175  Q
    |||||||||||||||| |||||||||||||||||||    
T  4645974 ttgattctgtaaaatttattttggttaaaagtaatt 4645939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 199
Target Start/End: Original strand, 37626132 - 37626182
Alignment:
Q  149 taaaattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttg 199  Q
    |||||||| |||| ||||||||||||||| ||||||||||  |||||||||    
T  37626132 taaaattgtttttagttaaaagtaattcagactaaaagtgttttgtgtttg 37626182  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 26911788 - 26911849
Alignment:
Q  191 ttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaat 252  Q
    |||||| || |||||||||||||||| ||| || ||||||| |||||| |||| ||||||||    
T  26911788 ttgtgtgtgtatacattcatgtaaaagtgaattaaactataaatttgtatgtggaaatcaat 26911849  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 228
Target Start/End: Complemental strand, 52342060 - 52342023
Alignment:
Q  191 ttgtgtttgcatacattcatgtaaaattgagttgaact 228  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  52342060 ttgtgtttgaatacattcatgtaaaaatgagttgaact 52342023  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 53913558 - 53913619
Alignment:
Q  191 ttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaat 252  Q
    |||| |||||||||||| |||| | | |||||| ||||||| |||| |||||||||||||||    
T  53913558 ttgtatttgcatacatttatgttatagtgagtttaactataaatttatgtgtgaaaatcaat 53913619  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 152 - 252
Target Start/End: Original strand, 33019098 - 33019198
Alignment:
Q  152 aattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaa 251  Q
    |||||||||||||||||||| ||||  ||||||||||| ||||||||| || ||||||||||||| |||||||||||||| |||| ||||||||||||||    
T  33019098 aattgattttggttaaaagtgattctgactaaaagtgatttgtgtttggatgcattcatgtaaaagtgagttgaactataaatttatgtgtgaaaatcaa 33019197  T
Q  252 t 252  Q
    |    
T  33019198 t 33019198  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 22536141 - 22536052
Alignment:
Q  152 aattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtg 241  Q
    |||||||||||||| |||||| ||| |||||||||||| ||||||||| ||||||| |||||||| |||||| ||||||| || ||||||    
T  22536141 aattgattttggttgaaagtatttctaactaaaagtgatttgtgtttggatacatttatgtaaaaatgagtttaactataaatatgtgtg 22536052  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 152 - 248
Target Start/End: Complemental strand, 13912930 - 13912834
Alignment:
Q  152 aattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaat 248  Q
    |||||||||||||||||| ||||||  || |||||||| ||||||||| ||||| |||||||||| ||||||||||  || |||||||||| |||||    
T  13912930 aattgattttggttaaaattaattctgacaaaaagtgatttgtgtttggatacaatcatgtaaaaatgagttgaacggtaaatttgtgtgtaaaaat 13912834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 15928391 - 15928476
Alignment:
Q  143 attctgtaaaattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaact 228  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||  ||||||| | |||| ||| ||||||| |||||| ||||    
T  15928391 attctgtagaattgattttggttaaaagtaattctaactaaaagtggtttgtgttgggatacgttcgtgtaaaagtgagttaaact 15928476  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 247
Target Start/End: Original strand, 11504033 - 11504099
Alignment:
Q  181 taaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaa 247  Q
    ||||||||| ||||||||  |||||||||||||||| ||||||||||||||  ||||||||||||||    
T  11504033 taaaagtgatttgtgttttaatacattcatgtaaaagtgagttgaactataactttgtgtgtgaaaa 11504099  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 43501239 - 43501178
Alignment:
Q  179 actaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgt 240  Q
    ||||||||||| ||||||||| |||||||||||||||| ||||||||| ||||  |||||||    
T  43501239 actaaaagtgatttgtgtttgtatacattcatgtaaaactgagttgaattataattttgtgt 43501178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 140 - 248
Target Start/End: Complemental strand, 9143130 - 9143022
Alignment:
Q  140 ttgattctgtaaaattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtg 239  Q
    |||||| |||| |||||||||| |||||| ||||||   ||||||| ||  || |||||| |||||||||||||||  ||||||||| |||  || ||||    
T  9143130 ttgattatgtagaattgattttagttaaatgtaattttgactaaaaatggtttttgtttgaatacattcatgtaaatgtgagttgaattatgaatatgtg 9143031  T
Q  240 tgtgaaaat 248  Q
    |||||||||    
T  9143030 tgtgaaaat 9143022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 16518882 - 16518834
Alignment:
Q  191 ttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtg 239  Q
    ||||||||| |||||||||||||||| |||||||||||||| |||||||    
T  16518882 ttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtg 16518834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 38074555 - 38074477
Alignment:
Q  149 taaaattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaac 227  Q
    ||||||||||||||||||||| |||||   ||||||||| | |||| |||  ||||||| |||||||| ||||||||||    
T  38074555 taaaattgattttggttaaaattaattattactaaaagttatttgtatttaaatacatttatgtaaaagtgagttgaac 38074477  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 231
Target Start/End: Original strand, 6074467 - 6074558
Alignment:
Q  139 tttgattctgtaaaattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactata 231  Q
    ||||||| |||| ||||||||||||||| |||| ||||  ||||||| | | || | |||| |||||||||||||||| | ||||||||||||    
T  6074467 tttgattttgtagaattgattttggttagaagtcattctgactaaaaataatttttatttggatacattcatgtaaaa-taagttgaactata 6074558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 226
Target Start/End: Original strand, 680271 - 680306
Alignment:
Q  191 ttgtgtttgcatacattcatgtaaaattgagttgaa 226  Q
    |||||||||||||||||||||||||| |||||||||    
T  680271 ttgtgtttgcatacattcatgtaaaagtgagttgaa 680306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 33502346 - 33502280
Alignment:
Q  183 aaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaat 252  Q
    ||||||| ||||||||| |||||||   |||||| |||||||||||||| || ||||||| |||||||||    
T  33502346 aaagtgatttgtgtttggatacatt---gtaaaagtgagttgaactataaatatgtgtgtaaaaatcaat 33502280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 250
Target Start/End: Original strand, 33047524 - 33047622
Alignment:
Q  152 aattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatca 250  Q
    |||| ||||| || ||||||||||   | ||||||||| ||||||||| ||||||| |||||||| |||| |||||  || |||| | |||||||||||    
T  33047524 aatttatttttgtcaaaagtaattatgattaaaagtgatttgtgtttggatacatttatgtaaaagtgaggtgaaccgtaaatttttctgtgaaaatca 33047622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 42982643 - 42982587
Alignment:
Q  196 tttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaat 252  Q
    |||| |||||||||||||||| ||||||| |  ||| |||||||||| |||||||||    
T  42982643 tttggatacattcatgtaaaagtgagttgtaaaataaatttgtgtgtaaaaatcaat 42982587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 151 - 252
Target Start/End: Original strand, 34721781 - 34721882
Alignment:
Q  151 aaattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatca 250  Q
    ||||||||||||||||||||||||| |||| |||||||| |||| |||| ||||||| |||||||| | ||| |||||||| ||||||||||||||||||    
T  34721781 aaattgattttggttaaaagtaattgaaaccaaaagtgatttgtatttgaatacattgatgtaaaagtaagtcgaactataaatttgtgtgtgaaaatca 34721880  T
Q  251 at 252  Q
    ||    
T  34721881 at 34721882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 140 - 241
Target Start/End: Complemental strand, 30557657 - 30557556
Alignment:
Q  140 ttgattctgtaaaattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtg 239  Q
    ||||||||||| |||||||||||||||||||| | ||  |||| |||||| ||||||||| |||||||||| ||||| |||||||||||||| |||||||    
T  30557657 ttgattctgtagaattgattttggttaaaagtgactctgactagaagtgatttgtgtttggatacattcatataaaagtgagttgaactataaatttgtg 30557558  T
Q  240 tg 241  Q
    ||    
T  30557557 tg 30557556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 139 - 252
Target Start/End: Complemental strand, 3416236 - 3416123
Alignment:
Q  139 tttgattctgtaaaattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgt 238  Q
    ||||||||| || ||| |||||||||||||||||||||  | ||||||| | |||| |||| |||||| ||| |||||||||||| ||||||| ||||||    
T  3416236 tttgattctatagaatcgattttggttaaaagtaattctgattaaaagttatttgtctttggatacatccatataaaattgagttaaactataaatttgt 3416137  T
Q  239 gtgtgaaaatcaat 252  Q
    |||| |||||||||    
T  3416136 gtgtaaaaatcaat 3416123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 152 - 252
Target Start/End: Original strand, 2099629 - 2099730
Alignment:
Q  152 aattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgt-aaaattgagttgaactatagatttgtgtgtgaaaatca 250  Q
    ||||||||||||||||||||||||   | ||||||||| ||||||||| |||||||||| | |||| |||||||| ||||| |||| |||||||||||||    
T  2099629 aattgattttggttaaaagtaattttgagtaaaagtgatttgtgtttggatacattcatataaaaaatgagttgagctataaatttatgtgtgaaaatca 2099728  T
Q  251 at 252  Q
    ||    
T  2099729 at 2099730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 152 - 252
Target Start/End: Original strand, 38797572 - 38797671
Alignment:
Q  152 aattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaa 251  Q
    |||||||||||||||||| ||| |   | ||||||||| || |||||||||||||| || ||||| |||||||||||||| |||||||||||||||||||    
T  38797572 aattgattttggttaaaaataaatttgattaaaagtgatttatgtttgcatacatt-atttaaaagtgagttgaactataaatttgtgtgtgaaaatcaa 38797670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 1514447 - 1514386
Alignment:
Q  191 ttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaat 252  Q
    ||||||||| |||||||||||||||| |||||||||| ||| |||||||||| |||||||||    
T  1514447 ttgtgtttggatacattcatgtaaaaatgagttgaacaataaatttgtgtgtaaaaatcaat 1514386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 7524225 - 7524156
Alignment:
Q  183 aaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaat 252  Q
    ||||||| ||||||||| | ||||| |||||||| |||||||||||||| |||||||||| |||||||||    
T  7524225 aaagtgatttgtgtttggacacatttatgtaaaagtgagttgaactataaatttgtgtgtaaaaatcaat 7524156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 152 - 252
Target Start/End: Complemental strand, 3910004 - 3909904
Alignment:
Q  152 aattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaa 251  Q
    ||||||| ||| |||||||| |||| |||||||||| | |||| |||| ||| |||| ||||||  |||||| || |||  |||||||||||||||||||    
T  3910004 aattgatattgattaaaagtgattctaactaaaagtaatttgtatttgaatagattcgtgtaaacgtgagttaaagtatgaatttgtgtgtgaaaatcaa 3909905  T
Q  252 t 252  Q
    |    
T  3909904 t 3909904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 140 - 252
Target Start/End: Original strand, 45660536 - 45660647
Alignment:
Q  140 ttgattctgtaaaattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtg 239  Q
    |||||||||||||||||||||||  ||||||| | | ||| || | |||| || |||||| ||| | |||||||||| | ||||||| | ||||||||||    
T  45660536 ttgattctgtaaaattgattttgactaaaagtgagttaaagtaga-gtgatttatgtttggataaactcatgtaaaagtaagttgaattgtagatttgtg 45660634  T
Q  240 tgtgaaaatcaat 252  Q
    ||| |||||||||    
T  45660635 tgtaaaaatcaat 45660647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 30850393 - 30850441
Alignment:
Q  204 cattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaat 252  Q
    ||||||||||||| |||||||||||||| |||||| ||| |||||||||    
T  30850393 cattcatgtaaaagtgagttgaactataaatttgtatgttaaaatcaat 30850441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 47321902 - 47321949
Alignment:
Q  205 attcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaat 252  Q
    |||||||||||| ||| |||||||||| |||||||| |||||||||||    
T  47321902 attcatgtaaaagtgaattgaactataaatttgtgtatgaaaatcaat 47321949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 248
Target Start/End: Original strand, 6283190 - 6283286
Alignment:
Q  152 aattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaat 248  Q
    ||||||||||| ||||||||   ||  | ||||||||| ||||||||| ||||||||||  ||||  || || ||||||| |||||||||| |||||    
T  6283190 aattgattttgtttaaaagtggctccgattaaaagtgatttgtgtttggatacattcataaaaaaacgaattaaactataaatttgtgtgtaaaaat 6283286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 32370004 - 32370068
Alignment:
Q  183 aaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaa 247  Q
    ||||||| ||||||||| ||||||||||||||||   |||| || |||| |||||||||| ||||    
T  32370004 aaagtgatttgtgtttggatacattcatgtaaaagcaagttcaattataaatttgtgtgtaaaaa 32370068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 252
Target Start/End: Complemental strand, 35548944 - 35548832
Alignment:
Q  140 ttgattctgtaaaattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtg 239  Q
    |||||| ||||||||||||| | ||| ||||||||| ||| | |||||||  |||||||  |||  || |||||||| |||||||||  ||| ||||  |    
T  35548944 ttgattttgtaaaattgattcttgttgaaagtaattgaaagttaaagtgatgtgtgtttaaatatttttatgtaaaagtgagttgaatgataaatttaag 35548845  T
Q  240 tgtgaaaatcaat 252  Q
    ||| |||||||||    
T  35548844 tgttaaaatcaat 35548832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 36447631 - 36447675
Alignment:
Q  101 cttagcttgtgtttggttgtgtggcggtgatagttgattttgatt 145  Q
    |||||| ||||||||||| ||||||||||| | ||||||||||||    
T  36447631 cttagcgtgtgtttggttctgtggcggtgaaaattgattttgatt 36447675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 144 - 252
Target Start/End: Complemental strand, 3482197 - 3482089
Alignment:
Q  144 ttctgtaaaattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtg 243  Q
    ||||||| |||||||||||||||||| | ||||  | ||||||||| ||||||||| |||||||||||||||| | |||||||||||| | |||||||||    
T  3482197 ttctgtagaattgattttggttaaaaatgattctcaataaaagtgatttgtgtttgaatacattcatgtaaaagtaagttgaactataaacttgtgtgtg 3482098  T
Q  244 aaaatcaat 252  Q
    |||||||||    
T  3482097 aaaatcaat 3482089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 140 - 252
Target Start/End: Complemental strand, 4911063 - 4910951
Alignment:
Q  140 ttgattctgtaaaattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtg 239  Q
    |||||||| || |||| ||||||||||||||||||||  ||||||||||| || |||||| ||||||| |||||||| ||||| |||||||| ||||||     
T  4911063 ttgattctctagaattaattttggttaaaagtaattctgactaaaagtgatttatgtttggatacatttatgtaaaagtgagtcgaactataaatttgta 4910964  T
Q  240 tgtgaaaatcaat 252  Q
    |||||||||||||    
T  4910963 tgtgaaaatcaat 4910951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 152 - 252
Target Start/End: Original strand, 25195308 - 25195408
Alignment:
Q  152 aattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaa 251  Q
    |||||||||| ||| |||||||||| || ||||||||| ||||||||| ||||||| |||||||| ||||||||| | || |||||||| ||||||||||    
T  25195308 aattgattttagttcaaagtaattctaattaaaagtgatttgtgtttggatacatttatgtaaaagtgagttgaattgtaaatttgtgtatgaaaatcaa 25195407  T
Q  252 t 252  Q
    |    
T  25195408 t 25195408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 140 - 252
Target Start/End: Complemental strand, 16540262 - 16540150
Alignment:
Q  140 ttgattctgtaaaattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtg 239  Q
    |||||| |||| ||||||||||||||| ||||||||| ||| | |||||  ||||||||| ||||||| |||||||| |||||| ||||||| || |||     
T  16540262 ttgattatgtagaattgattttggttagaagtaattccaaccagaagtggtttgtgtttggatacattgatgtaaaagtgagtttaactataaatatgta 16540163  T
Q  240 tgtgaaaatcaat 252  Q
     |||||| |||||    
T  16540162 agtgaaactcaat 16540150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 252
Target Start/End: Complemental strand, 17225946 - 17225895
Alignment:
Q  201 atacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaat 252  Q
    |||||||||||||||| |||||||||||||| |||||| ||| |||||||||    
T  17225946 atacattcatgtaaaactgagttgaactataaatttgtatgtaaaaatcaat 17225895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 245
Target Start/End: Complemental strand, 4908105 - 4908013
Alignment:
Q  152 aattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaa 245  Q
    |||||||||||||||||||| ||||   |||||||||| ||||||||| ||| | |||||||||| | || |||| |||| |||||| ||||||    
T  4908105 aattgattttggttaaaagtgattcttcctaaaagtgatttgtgtttggataaaatcatgtaaaagtaag-tgaattataaatttgtttgtgaa 4908013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 28929622 - 28929678
Alignment:
Q  152 aattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattc 208  Q
    |||||||||||||||||| |||||| | |||||| ||| ||||||||| ||||||||    
T  28929622 aattgattttggttaaaaataattctagctaaaaatgatttgtgtttgaatacattc 28929678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 260
Target Start/End: Complemental strand, 8860608 - 8860538
Alignment:
Q  191 ttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaa-tcttaactt 260  Q
    ||||||||  ||||||||||| |||| |||||||||| ||| |||| ||||| |||||||| |||||||||    
T  8860608 ttgtgtttagatacattcatgcaaaagtgagttgaaccataaatttatgtgtcaaaatcaattcttaactt 8860538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 6895892 - 6895956
Alignment:
Q  152 aattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaa 216  Q
    |||||||||||||||||| |||||   ||||||||||  |||| |||  ||||||||||||||||    
T  6895892 aattgattttggttaaaactaattttgactaaaagtggtttgttttttgatacattcatgtaaaa 6895956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 152 - 252
Target Start/End: Complemental strand, 42858251 - 42858151
Alignment:
Q  152 aattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaa 251  Q
    |||||||||||||||||| | ||||  |||||||||||  |||||||| ||| |||||||||||| |||||||||||||| |||||||||||||||||||    
T  42858251 aattgattttggttaaaaatgattctgactaaaagtgatctgtgtttgaataaattcatgtaaaagtgagttgaactataaatttgtgtgtgaaaatcaa 42858152  T
Q  252 t 252  Q
    |    
T  42858151 t 42858151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 152 - 252
Target Start/End: Original strand, 18851024 - 18851124
Alignment:
Q  152 aattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaa 251  Q
    ||||||||||||||||||||||||   |||||| |||  ||||||||| |||  ||||||||||| |||||| ||||||| || ||||||||||||||||    
T  18851024 aattgattttggttaaaagtaattttgactaaatgtggtttgtgtttggataacttcatgtaaaagtgagtttaactataaatatgtgtgtgaaaatcaa 18851123  T
Q  252 t 252  Q
    |    
T  18851124 t 18851124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 140 - 252
Target Start/End: Complemental strand, 38845599 - 38845486
Alignment:
Q  140 ttgattctgtaaaattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgt-aaaattgagttgaactatagatttgt 238  Q
    |||||| |||| ||||  |||||||| |||||||||   ||||||| ||| ||||||||| ||| |||||||| |||| |||||| ||||||| ||||||    
T  38845599 ttgattttgtagaattcgttttggtttaaagtaattatgactaaaaatgatttgtgtttggatatattcatgtaaaaagtgagtttaactatatatttgt 38845500  T
Q  239 gtgtgaaaatcaat 252  Q
    ||||||||||||||    
T  38845499 gtgtgaaaatcaat 38845486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 36290152 - 36290079
Alignment:
Q  178 aactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaa 251  Q
    ||||||||||   |||||| || |||||||| ||||||| |||||||||||||| || ||||| ||||||||||    
T  36290152 aactaaaagttttttgtgtatggatacattcgtgtaaaactgagttgaactataaatatgtgtctgaaaatcaa 36290079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 228
Target Start/End: Complemental strand, 38265089 - 38265000
Alignment:
Q  140 ttgattctgtaaaattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaa-ttgagttgaact 228  Q
    |||||| |||| ||||||||||||||||| | ||||| || ||||||||| |||| |||| | |||||||| |||||  |||||||||||    
T  38265089 ttgattttgtagaattgattttggttaaacgcaattctaaataaaagtgatttgtttttggacacattcatctaaaaggtgagttgaact 38265000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 248
Target Start/End: Complemental strand, 5508403 - 5508316
Alignment:
Q  157 attttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaat 248  Q
    |||||| |||||| |||||| |||||||||   ||| |||||| ||| |||||||||||| | |||||||||    ||||||||||||||||    
T  5508403 attttgattaaaaataattctaactaaaaggtggttatgtttgaataaattcatgtaaaagtaagttgaact----atttgtgtgtgaaaat 5508316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 10898810 - 10898764
Alignment:
Q  206 ttcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaat 252  Q
    ||||||||||| |||||||||| ||| |||||||||| |||||||||    
T  10898810 ttcatgtaaaagtgagttgaacaataaatttgtgtgtaaaaatcaat 10898764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 247
Target Start/End: Original strand, 13171708 - 13171797
Alignment:
Q  157 attttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaa 247  Q
    ||||||||||||||||||||  | ||||||||| || | |||| ||| |||  |||||||||||||| ||||||| |||| ||| ||||||    
T  13171708 attttggttaaaagtaattctga-taaaagtgatttttatttggataaatttttgtaaaattgagtttaactataaatttttgtatgaaaa 13171797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 5468859 - 5468818
Alignment:
Q  210 tgtaaaattgagttgaactatagatttgtgtgtgaaaatcaa 251  Q
    ||||||| |||||||||||||| |||||||| ||||||||||    
T  5468859 tgtaaaaatgagttgaactataaatttgtgtatgaaaatcaa 5468818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 250
Target Start/End: Original strand, 11418780 - 11418879
Alignment:
Q  149 taaaattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaat 248  Q
    |||||||||||||||  |||| || || |||  |||||||| || |||||||||||| || ||| |||||||||| ||| ||| |||||||||| |||||    
T  11418780 taaaattgattttggcgaaaattattt-aaaggaaaagtgatttatgtttgcatacaatcgtgt-aaattgagtttaacaataaatttgtgtgtaaaaat 11418877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 11648171 - 11648125
Alignment:
Q  204 cattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaat 252  Q
    ||||||||||||||||||||||| |||  ||| ||||||||||||||||    
T  11648171 cattcatgtaaaattgagttgaattat--attcgtgtgtgaaaatcaat 11648125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 28110431 - 28110480
Alignment:
Q  203 acattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaat 252  Q
    ||||| || ||||| |||||| ||||||| ||||||||||||||||||||    
T  28110431 acatttatataaaagtgagttcaactataaatttgtgtgtgaaaatcaat 28110480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 252
Target Start/End: Original strand, 27374224 - 27374336
Alignment:
Q  140 ttgattctgtaaaattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtg 239  Q
    ||||||||||||||||||||  |  ||||||||| | |||   ||||||| ||||| ||| |||| ||||||||||  |||||| |||  || ||||||     
T  27374224 ttgattctgtaaaattgattccgactaaaagtaagttaaaagtaaagtgatttgtgattgaatactttcatgtaaatgtgagttaaaccgtaaatttgta 27374323  T
Q  240 tgtgaaaatcaat 252  Q
    ||| |||||||||    
T  27374324 tgtaaaaatcaat 27374336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 140 - 252
Target Start/End: Complemental strand, 31984 - 31869
Alignment:
Q  140 ttgattctgtaaaattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttg---aactatagattt 236  Q
    |||||| |||| ||||||||||||||| ||||||||| ||||| |||||  ||||||||| ||||||| |||||||| |||||||   ||||||| || |    
T  31984 ttgattatgtagaattgattttggttagaagtaattccaactagaagtggtttgtgtttggatacatttatgtaaaagtgagttgtttaactataaatat 31885  T
Q  237 gtgtgtgaaaatcaat 252  Q
    || |||||||||||||    
T  31884 gtatgtgaaaatcaat 31869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 32928004 - 32927939
Alignment:
Q  183 aaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaat 248  Q
    ||||||| ||||||||| |||||||||||||||| |||||||||||||| |||||||||| |||||    
T  32928004 aaagtgatttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtgtgtaaaaat 32927939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 152 - 257
Target Start/End: Complemental strand, 32101216 - 32101111
Alignment:
Q  152 aattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaa 251  Q
    |||||||||||||||||| |||||   |  |||||||| |||||| || ||||||| |||||||| |||||||||||||| |||||| | ||||||| ||    
T  32101216 aattgattttggttaaaaataattacgatcaaaagtgatttgtgtgtggatacatttatgtaaaagtgagttgaactataaatttgtatatgaaaattaa 32101117  T
Q  252 tcttaa 257  Q
    | ||||    
T  32101116 ttttaa 32101111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 35495102 - 35495033
Alignment:
Q  183 aaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaat 252  Q
    ||||||| ||||||||| ||| |||||||||||| | ||||||||||||||||||||||| |||| ||||    
T  35495102 aaagtgatttgtgtttggatatattcatgtaaaagtaagttgaactatagatttgtgtgtaaaaaacaat 35495033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 252
Target Start/End: Complemental strand, 38868887 - 38868786
Alignment:
Q  151 aaattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatca 250  Q
    ||||||||||||||| ||| |||||   ||||||| ||| || | |||| |||| ||||||||||| ||||| |||||||| ||||||| ||||||||||    
T  38868887 aaattgattttggttcaaaataattttcactaaaattgatttatatttgaatacgttcatgtaaaagtgagtagaactataaatttgtgcgtgaaaatca 38868788  T
Q  251 at 252  Q
    ||    
T  38868787 at 38868786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 252
Target Start/End: Complemental strand, 38868592 - 38868541
Alignment:
Q  201 atacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaat 252  Q
    |||||||  |||||||||||||||||||||| ||||||||||||||||||||    
T  38868592 atacattattgtaaaattgagttgaactataaatttgtgtgtgaaaatcaat 38868541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 157 - 252
Target Start/End: Original strand, 13384595 - 13384696
Alignment:
Q  157 attttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaa------attgagttgaactatagatttgtgtgtgaaaatca 250  Q
    ||||||||||||||||||||  | ||| ||||| ||||||||  ||| |||||||||||      | |||||||||||||| ||||||||||||||||||    
T  13384595 attttggttaaaagtaattctgattaagagtgatttgtgttttgatatattcatgtaaatgtaaaagtgagttgaactataaatttgtgtgtgaaaatca 13384694  T
Q  251 at 252  Q
    ||    
T  13384695 at 13384696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 40769350 - 40769409
Alignment:
Q  193 gtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaat 252  Q
    ||||||| |||||||  ||||||||||| ||||| |||| ||||||||||||||||||||    
T  40769350 gtgtttgaatacatttgtgtaaaattgaattgaattataaatttgtgtgtgaaaatcaat 40769409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 257
Target Start/End: Complemental strand, 32736566 - 32736500
Alignment:
Q  191 ttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaatcttaa 257  Q
    |||| |||| |||||||||||||||| ||| |||||||||| |||||||||| ||||| ||| ||||    
T  32736566 ttgtatttgaatacattcatgtaaaagtgaattgaactataaatttgtgtgtaaaaattaattttaa 32736500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 4662884 - 4662945
Alignment:
Q  191 ttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaat 252  Q
    ||||||||| ||||||||| | ||||  ||||||||||||| |||||||||| |||||||||    
T  4662884 ttgtgtttggatacattcacggaaaagcgagttgaactatacatttgtgtgtaaaaatcaat 4662945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 16972045 - 16972106
Alignment:
Q  191 ttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaat 252  Q
    ||||||||| |||||||||||||||| ||| |||||| ||| |||||||| | |||||||||    
T  16972045 ttgtgtttgaatacattcatgtaaaagtgatttgaacaataaatttgtgtttaaaaatcaat 16972106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 37684521 - 37684464
Alignment:
Q  179 actaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagattt 236  Q
    ||||||||||| ||||||||| ||||||| |||||||| ||||||||| |||| ||||    
T  37684521 actaaaagtgatttgtgtttggatacatttatgtaaaagtgagttgaattataaattt 37684464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 252
Target Start/End: Original strand, 6026995 - 6027091
Alignment:
Q  156 gattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaat 252  Q
    |||||||||||||||| ||||  | ||||| | | |||||||||  ||||| ||||||||| |||||| |||| || |||||| | |||||||||||    
T  6026995 gattttggttaaaagtgattctcattaaaaattatttgtgtttgagtacatccatgtaaaaatgagttaaactgtaaatttgtatatgaaaatcaat 6027091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 152 - 231
Target Start/End: Original strand, 36200072 - 36200150
Alignment:
Q  152 aattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactata 231  Q
    ||||||||||||||||| |||||||  ||||||| ||| ||||| ||  |||||||||||||||| ||| ||||| ||||    
T  36200072 aattgattttggttaaa-gtaattctgactaaaaatgatttgtgcttcaatacattcatgtaaaagtgaattgaattata 36200150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 44141002 - 44141049
Alignment:
Q  152 aattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttg 199  Q
    |||||||||||||||||||| ||||  ||||||||||| |||||||||    
T  44141002 aattgattttggttaaaagtgattctgactaaaagtgaattgtgtttg 44141049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 5859047 - 5859105
Alignment:
Q  194 tgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaat 252  Q
    |||||| || ||||||||||||| |||||||||| ||| | |||||||| |||||||||    
T  5859047 tgtttgaatgcattcatgtaaaagtgagttgaaccataaaattgtgtgtaaaaatcaat 5859105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 7244523 - 7244592
Alignment:
Q  152 aattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagt 222  Q
    |||||||||||||||||| ||| |  | | |||||||| ||||||||| |||||||||||||||| |||||    
T  7244523 aattgattttggttaaaaataacttgacc-aaaagtgatttgtgtttgaatacattcatgtaaaaatgagt 7244592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 40848121 - 40848060
Alignment:
Q  191 ttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaat 252  Q
    ||||||||| ||| |||||| ||||| |||||| || ||||  |||||||||||||||||||    
T  40848121 ttgtgtttgaatatattcatataaaaatgagtttaattataagtttgtgtgtgaaaatcaat 40848060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 2924890 - 2924822
Alignment:
Q  182 aaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatca 250  Q
    ||||||||||| |||||| ||||||  |||||||| |||||||| | ||| ||||| |||| |||||||    
T  2924890 aaaagtgagttatgtttggatacatatatgtaaaagtgagttgatcaatatatttgagtgtaaaaatca 2924822  T

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Target: scaffold0041 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 46047 - 45973
Alignment:
Q  152 aattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaac 227  Q
    ||||||||||||||||||||||||  || ||||||||| ||||||||| |||||||| ||||||||||| ||||||    
T  46047 aattgattttggttaaaagtaattataaataaaagtga-ttgtgtttgaatacattcttgtaaaattgaattgaac 45973  T

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Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 152 - 227
Target Start/End: Original strand, 40903971 - 40904045
Alignment:
Q  152 aattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaac 227  Q
    ||||||||||||||||||||||||  || ||||||||| ||||||||| |||||||| ||||||||||| ||||||    
T  40903971 aattgattttggttaaaagtaattataaataaaagtga-ttgtgtttgaatacattcttgtaaaattgaattgaac 40904045  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 45557477 - 45557407
Alignment:
Q  183 aaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaatc 253  Q
    ||||||| ||||||||| |||||||||||||||| |||||||| ||| | |||||||||| ||||||||||    
T  45557477 aaagtgatttgtgtttggatacattcatgtaaaagtgagttgagctacaaatttgtgtgtaaaaatcaatc 45557407  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 42816450 - 42816510
Alignment:
Q  192 tgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaat 252  Q
    |||||||||||||||||||||| || ||| ||||| |||| ||||||||||||||||||||    
T  42816450 tgtgtttgcatacattcatgtagaagtgaattgaattataaatttgtgtgtgaaaatcaat 42816510  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 250
Target Start/End: Complemental strand, 24109597 - 24109504
Alignment:
Q  157 attttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatca 250  Q
    |||||||||||||| |||||  |||  |||||  ||||||||  |||  ||||||||||| |||| || |||||||||||||||||||||||||    
T  24109597 attttggttaaaaggaattctgactctaagtgttttgtgttttgatatgttcatgtaaaagtgagctggactatagatttgtgtgtgaaaatca 24109504  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 140 - 252
Target Start/End: Complemental strand, 40491733 - 40491621
Alignment:
Q  140 ttgattctgtaaaattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtg 239  Q
    |||||||||||||||||||||||  ||||||| | |  ||   ||||||| || | |||| |||||||||||||||| |||||| |||| || |||||||    
T  40491733 ttgattctgtaaaattgattttgactaaaagtgagttgaaggtaaagtgatttatttttggatacattcatgtaaaagtgagttaaactttaaatttgtg 40491634  T
Q  240 tgtgaaaatcaat 252  Q
    ||| ||| |||||    
T  40491633 tgtaaaagtcaat 40491621  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 4074220 - 4074263
Alignment:
Q  142 gattctgtaaaattgattttggttaaaagtaattcaaactaaaa 185  Q
    |||||| ||||||||||||||||||||||| |||||||||||||    
T  4074220 gattctttaaaattgattttggttaaaagtgattcaaactaaaa 4074263  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 17111957 - 17111889
Alignment:
Q  183 aaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaa 251  Q
    ||||||| ||||||||| || ||||||||||||| ||||| ||| |||| |||||||||| | ||||||    
T  17111957 aaagtgatttgtgtttggatgcattcatgtaaaaatgagtagaattataaatttgtgtgtaagaatcaa 17111889  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 40561731 - 40561790
Alignment:
Q  183 aaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgt 242  Q
    ||||||| || |||||| |||||||||||||||| |||||||||| ||| ||||| ||||    
T  40561731 aaagtgatttatgtttggatacattcatgtaaaagtgagttgaacaatatatttgagtgt 40561790  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 240
Target Start/End: Complemental strand, 45997832 - 45997743
Alignment:
Q  152 aattgattttggttaaaagtaattcaaactaaaagtg-agttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgt 240  Q
    |||||||| |||| ||||||||||| ||||||||    | ||||||||  ||||||||||| ||||  ||||||||||||| ||||||||    
T  45997832 aattgattatggtcaaaagtaattctaactaaaaaaatatttgtgtttaaatacattcatgcaaaaaagagttgaactataaatttgtgt 45997743  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 252
Target Start/End: Original strand, 25359520 - 25359616
Alignment:
Q  156 gattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaat 252  Q
    |||||||||||||| ||||||  || |||||||| ||||||||| |||||||||| || || ||| || ||| ||| || |||||||||||||||||    
T  25359520 gattttggttaaaaataattctgacaaaaagtgatttgtgtttggatacattcatatagaagtgattttaacaataaatatgtgtgtgaaaatcaat 25359616  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 152 - 248
Target Start/End: Original strand, 52141190 - 52141286
Alignment:
Q  152 aattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaat 248  Q
    |||| |||||| |||||||||||||  |||||||||   ||||||||  |||||||||| ||||| ||||||||||||||  | |||||||||||||    
T  52141190 aattaattttgattaaaagtaattctgactaaaagtagtttgtgtttaaatacattcatataaaagtgagttgaactataattatgtgtgtgaaaat 52141286  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 31708220 - 31708281
Alignment:
Q  191 ttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaat 252  Q
    ||||||||| |||||||||||||||| ||||||||| |||| |||||||||| | |||||||    
T  31708220 ttgtgtttggatacattcatgtaaaagtgagttgaattataaatttgtgtgttagaatcaat 31708281  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 43661933 - 43661883
Alignment:
Q  201 atacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaa 251  Q
    |||||||||||||||| |||||||||| ||| |||| ||||||||||||||    
T  43661933 atacattcatgtaaaagtgagttgaacaatacatttatgtgtgaaaatcaa 43661883  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 46551209 - 46551294
Alignment:
Q  152 aattgattttggttaaaagtaattcaaac-taaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagattt 236  Q
    ||||||||||||||||||||| |||  || ||||||| | || |||||| |||||||||| ||||| |||||||| ||||| ||||    
T  46551209 aattgattttggttaaaagtacttccgacttaaaagtaatttttgtttgaatacattcatataaaagtgagttgagctataaattt 46551294  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 163 - 252
Target Start/End: Complemental strand, 52364183 - 52364094
Alignment:
Q  163 gttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaat 252  Q
    |||||||||||||| || ||||| ||| ||||||||  |||  || |||||||| ||||||||||| || |||| ||| |||||||||||    
T  52364183 gttaaaagtaattctaattaaaattgatttgtgtttaaataattttatgtaaaagtgagttgaactgtaaatttatgtttgaaaatcaat 52364094  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 4526224 - 4526170
Alignment:
Q  203 acattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaatcttaa 257  Q
    ||||| |||||||| || ||||||||||| |||||||||| ||||||||| ||||    
T  4526224 acatttatgtaaaagtgtgttgaactataaatttgtgtgtaaaaatcaattttaa 4526170  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 225
Target Start/End: Original strand, 21261240 - 21261324
Alignment:
Q  140 ttgattctgtaaaattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatacattcatgtaaaattgagttga 225  Q
    |||||| |||| ||||||||||||||||||||||||   | | ||||||  ||||| ||| |||||||||||||||| | ||||||    
T  21261240 ttgattatgtagaattgattttggttaaaagtaatttggatttaaagtggtttgtg-ttggatacattcatgtaaaagtaagttga 21261324  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 35264384 - 35264453
Alignment:
Q  183 aaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaat 252  Q
    |||||||||| ||||||  ||||||||||||||| ||| |||||| ||| ||||  |||| |||||||||    
T  35264384 aaagtgagttatgtttgggtacattcatgtaaaaatgacttgaacaataaatttaagtgttaaaatcaat 35264453  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 254
Target Start/End: Original strand, 40736466 - 40736582
Alignment:
Q  140 ttgattctgtaaaattgattttggttaaaagtaattcaaactaaaagtgagttgtgtttgcatac--attcatgtaaaattgagttgaactatagatttg 237  Q
    |||||||| || | ||||||||||||||||  ||||  || ||||| ||| ||||||||| ||||  ||| || ||||| | | ||||| |||| |||||    
T  40736466 ttgattctatagagttgattttggttaaaaacaattttaattaaaaatgatttgtgtttgaatacatattaatataaaaattaattgaattataaatttg 40736565  T
Q  238 tgtgtgaaaatcaatct 254  Q
    ||||||||||| |||||    
T  40736566 tgtgtgaaaattaatct 40736582  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 41596122 - 41596191
Alignment:
Q  183 aaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaat 252  Q
    ||||||| || |||||| ||||||||||| |||| |||||  ||||||| | |||||||| |||||||||    
T  41596122 aaagtgatttctgtttggatacattcatggaaaagtgagtcaaactataaacttgtgtgtaaaaatcaat 41596191  T

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Target: scaffold0361 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 14087 - 14156
Alignment:
Q  183 aaagtgagttgtgtttgcatacattcatgtaaaattgagttgaactatagatttgtgtgtgaaaatcaat 252  Q
    ||||||| || |||||| |||||||||||| ||| |||||||||  ||| ||||| |||| |||||||||    
T  14087 aaagtgatttatgtttggatacattcatgtgaaagtgagttgaaaaataaatttgagtgtaaaaatcaat 14156  T

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