View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6389_low_6 (Length: 371)
Name: NF6389_low_6
Description: NF6389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6389_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 20 - 351
Target Start/End: Original strand, 18687770 - 18688098
Alignment:
| Q |
20 |
gggagctgtggtgaagtgtgtttccttacaccaatgattagttcaactgaaaatttgaccgaccatggagttgttccattgagaagatgggaactgaaca |
119 |
Q |
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| T |
18687770 |
gggagctgtggtgaagtgtgtttccttagaccaatgattagttcaactgaaaattcgaccgaccatggagttgttccattgagaagatgggaactgaaca |
18687869 |
T |
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| Q |
120 |
atgttatttgtctgaaaaaacagctcaggttggctctgagtgttgtttagacaacgaacaaagaatgcttggtaccgtgttgaccaattctggtattgat |
219 |
Q |
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| T |
18687870 |
atgttatttgtctgaaaaaacagctcaggttggctctgagtgttgtttagacaacgaacaaagaatgcttggtaccgtgttgaccaattctggtattgat |
18687969 |
T |
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| Q |
220 |
gaaaattcaaatcaaaagtttctgtgaatatgatggaaaattttgttattcaactgcctgaactacctcatcctttctaagaaaattcttgccagacttt |
319 |
Q |
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| T |
18687970 |
gaaaattcaaat--taagtttctgtgaatatgatgggaaattttgttattcaactgcctgaactacctcatcctttctaag-aaattcttgccagacttt |
18688066 |
T |
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| Q |
320 |
agaaggttcatgtattcaacaaagtacctctg |
351 |
Q |
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| T |
18688067 |
agaaggttcatgtattcaacaaagtacctctg |
18688098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 99 - 279
Target Start/End: Original strand, 48447689 - 48447864
Alignment:
| Q |
99 |
tgagaagatgggaactgaacaatgttatttgtctgaaaaaacagctcaggttggctctgagtgttgtttagacaacgaacaaagaatgcttggtaccgtg |
198 |
Q |
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| T |
48447689 |
tgagaagataggaactgaacaacgtgacatgtctgaaaaaacaactcaggttggctctga---atgtttagacaaagaacaaagtgtgcttggtactgta |
48447785 |
T |
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| Q |
199 |
ttgaccaattctggtattgatgaaaattcaaatcaaaagtttctgtgaatatgatggaaaattttgttattcaactgcctg |
279 |
Q |
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| T |
48447786 |
gtaaccgattctgttatcgatgaaaaatcaaat--aatatttcggtgaatatgactgagaattctgttattcaactgcctg |
48447864 |
T |
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