View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6390_high_12 (Length: 246)
Name: NF6390_high_12
Description: NF6390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6390_high_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 9166594 - 9166834
Alignment:
| Q |
1 |
atcatcctactgtcattgagcagtaataaacacagataagaaaataaagagcaaagttatttccacgaacacaatccttaacaagcataccaggatccaa |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9166594 |
atcatcctactgtcattgaacagtaataaacacagataagaaaataaagagcaaagttatttccacgaacacaatccttaacaagcataccaggatccaa |
9166693 |
T |
|
| Q |
101 |
caggaatggcaataaactccttctttcccttcataagcaggtaatatgtagctgattgtgaaccttctagatgaccctgaaattgggactgacctgtttc |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9166694 |
caggaatggcaataaactacttctttcccttcataagcaggtaatatgtagctgattgtgaaccttctagatgaccctgaaattgggactgacctgtttc |
9166793 |
T |
|
| Q |
201 |
atcttccaagagccaaggcctgttcttgtacttctcctatg |
241 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9166794 |
atcttccaagaaccaaggcctgttcttgtacttctcctatg |
9166834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 9155177 - 9155414
Alignment:
| Q |
1 |
atcatcctactgtcattgagcagtaataaacacagataagaaaataaagagcaaagttatttccacgaacacaatccttaacaagcataccaggatccaa |
100 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||| |||| ||| ||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
9155177 |
atcatcctactgtctttgagcagtaacaaacacagataagaaaaggaagataaaacca---tccactaacacaatccttaacaagcataccaggaaccag |
9155273 |
T |
|
| Q |
101 |
caggaatggcaataaactccttctttcccttcataagcaggtaatatgtagctgattgtgaaccttctagatgaccctgaaattgggactgacctgtttc |
200 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
9155274 |
caggaatggcaacaaactccttcttttccttcattagcaggtaatacgtagctgattgtgaaccttcaagatgaccctgaaactgggactgacctgtttc |
9155373 |
T |
|
| Q |
201 |
atcttccaagagccaaggcctgttcttgtacttctcctatg |
241 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9155374 |
atcctccaagagccaaggcctgttcttgtacttctcctatg |
9155414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University