View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6390_high_3 (Length: 392)
Name: NF6390_high_3
Description: NF6390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6390_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 284
Target Start/End: Original strand, 1196135 - 1196412
Alignment:
| Q |
11 |
cacagataaaatctacctcgtctatcttttatttatataaataaaagaaaaataaaatctcagatactaattgatttattagcacttgtaaagcactgac |
110 |
Q |
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| T |
1196135 |
cacagataaaatctacctcgtctatcttttatttatataaataaaagaaaaataaaatctcagatactaattgatttattagcacttggaaagcactgac |
1196234 |
T |
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| Q |
111 |
tatgaataaactataaataagggcaaaaactttaagcttctaagaataataaataaaccaaacagaagctcat-gaagnnnnnnnngatttagacaatga |
209 |
Q |
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| T |
1196235 |
tatgaataaactataaataagggcaaaaactataagcttctaagaataataaataaaccaaacagaagctcatagaa--aaaaaaagatttagacaatga |
1196332 |
T |
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| Q |
210 |
aagtcatacttcttgtttcataattctcaaatggattaacttacatctaattaaactca-----ctcaagaatgggaggg |
284 |
Q |
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| T |
1196333 |
aagtcatacttcttgtttcataattctcaaatggattaacttacatctaattaaactcattagtctcaagaatgggaggg |
1196412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 1196444 - 1196513
Alignment:
| Q |
302 |
catttatcttactctcatgcattatttttgaagtaaataggcattttgatgcttggttgaatgcgacagt |
371 |
Q |
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| T |
1196444 |
catttatcttactctcatgcattatttttgaagtaaataggcattttgatgcttggttgaatgcgacagt |
1196513 |
T |
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