View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6390_low_11 (Length: 251)

Name: NF6390_low_11
Description: NF6390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6390_low_11
NF6390_low_11
[»] chr5 (15 HSPs)
chr5 (31-81)||(20643916-20643966)
chr5 (31-81)||(9957625-9957675)
chr5 (31-81)||(32110904-32110954)
chr5 (31-85)||(7071136-7071190)
chr5 (31-81)||(8225365-8225415)
chr5 (31-81)||(8959561-8959611)
chr5 (39-81)||(34425232-34425274)
chr5 (31-81)||(39505441-39505491)
chr5 (31-81)||(42273551-42273601)
chr5 (31-81)||(12730196-12730246)
chr5 (31-73)||(19413050-19413092)
chr5 (37-81)||(842750-842794)
chr5 (37-81)||(11262068-11262112)
chr5 (37-69)||(37522774-37522806)
chr5 (37-69)||(37562946-37562978)
[»] chr4 (16 HSPs)
chr4 (31-85)||(4058610-4058664)
chr4 (37-81)||(7654558-7654602)
chr4 (31-81)||(17186984-17187034)
chr4 (31-69)||(29203419-29203457)
chr4 (37-81)||(2229178-2229222)
chr4 (37-81)||(14332690-14332734)
chr4 (31-81)||(16605037-16605087)
chr4 (31-81)||(35310945-35310995)
chr4 (31-81)||(35529571-35529621)
chr4 (31-81)||(39078057-39078107)
chr4 (31-81)||(42915429-42915479)
chr4 (47-85)||(50080678-50080716)
chr4 (37-81)||(28669177-28669221)
chr4 (37-81)||(41414786-41414830)
chr4 (37-81)||(47867810-47867854)
chr4 (41-81)||(55580567-55580607)
[»] chr8 (12 HSPs)
chr8 (31-81)||(34890384-34890434)
chr8 (31-81)||(30576037-30576087)
chr8 (31-81)||(35456234-35456284)
chr8 (31-81)||(41755824-41755874)
chr8 (37-81)||(7022588-7022632)
chr8 (37-81)||(7858459-7858503)
chr8 (31-81)||(8107828-8107879)
chr8 (31-81)||(4047104-4047154)
chr8 (31-69)||(13144171-13144209)
chr8 (31-69)||(24892750-24892788)
chr8 (31-81)||(35525498-35525548)
chr8 (31-81)||(36190671-36190721)
[»] chr7 (16 HSPs)
chr7 (31-81)||(25944478-25944528)
chr7 (191-240)||(21517075-21517124)
chr7 (37-81)||(18102462-18102506)
chr7 (37-81)||(45485886-45485930)
chr7 (31-81)||(9157992-9158042)
chr7 (31-73)||(42045032-42045074)
chr7 (31-81)||(47778674-47778724)
chr7 (40-81)||(47557933-47557974)
chr7 (37-81)||(14805803-14805847)
chr7 (37-81)||(15252797-15252841)
chr7 (37-81)||(16562681-16562725)
chr7 (37-81)||(16602937-16602981)
chr7 (33-81)||(18800912-18800960)
chr7 (37-81)||(19912952-19912996)
chr7 (159-187)||(21516930-21516958)
chr7 (33-81)||(30082281-30082329)
[»] chr3 (14 HSPs)
chr3 (31-81)||(14752376-14752426)
chr3 (31-81)||(54465059-54465109)
chr3 (31-120)||(2927155-2927244)
chr3 (37-81)||(11054451-11054495)
chr3 (31-81)||(6752573-6752623)
chr3 (31-81)||(7866651-7866701)
chr3 (31-81)||(22456157-22456207)
chr3 (31-81)||(22479203-22479253)
chr3 (31-81)||(37074864-37074914)
chr3 (31-85)||(47867083-47867137)
chr3 (37-81)||(23311736-23311780)
chr3 (37-69)||(23910638-23910670)
chr3 (37-81)||(36546479-36546523)
chr3 (37-81)||(36561792-36561836)
[»] chr2 (20 HSPs)
chr2 (31-81)||(19264001-19264051)
chr2 (31-81)||(5280689-5280739)
chr2 (31-81)||(18454967-18455017)
chr2 (31-81)||(28858211-28858261)
chr2 (31-81)||(33198843-33198893)
chr2 (37-81)||(3201268-3201312)
chr2 (37-81)||(6110384-6110428)
chr2 (31-81)||(8701503-8701553)
chr2 (31-81)||(11616925-11616975)
chr2 (31-81)||(26998238-26998288)
chr2 (31-85)||(30752043-30752097)
chr2 (31-81)||(32273592-32273642)
chr2 (47-85)||(35022794-35022832)
chr2 (31-81)||(38070917-38070967)
chr2 (31-81)||(40808921-40808971)
chr2 (31-81)||(45660264-45660314)
chr2 (37-81)||(28599332-28599376)
chr2 (37-69)||(35517067-35517099)
chr2 (37-69)||(41528201-41528233)
chr2 (37-81)||(45085190-45085234)
[»] chr1 (22 HSPs)
chr1 (31-81)||(1820317-1820367)
chr1 (31-81)||(6787200-6787250)
chr1 (31-81)||(15959849-15959899)
chr1 (31-81)||(2125970-2126020)
chr1 (31-81)||(7468162-7468212)
chr1 (31-81)||(28016953-28017003)
chr1 (37-81)||(12449151-12449195)
chr1 (37-81)||(32624190-32624234)
chr1 (37-81)||(39555770-39555814)
chr1 (31-69)||(298876-298914)
chr1 (31-81)||(4672801-4672851)
chr1 (39-81)||(6786739-6786781)
chr1 (31-69)||(32983348-32983386)
chr1 (31-81)||(33369455-33369505)
chr1 (31-81)||(44149041-44149091)
chr1 (31-81)||(46818720-46818770)
chr1 (31-81)||(47026396-47026446)
chr1 (31-67)||(3875232-3875268)
chr1 (37-73)||(28120938-28120974)
chr1 (40-80)||(35884141-35884181)
chr1 (37-69)||(43667484-43667516)
chr1 (49-81)||(50369870-50369902)
[»] scaffold0132 (2 HSPs)
scaffold0132 (31-81)||(914-964)
scaffold0132 (31-81)||(8874-8924)
[»] scaffold0006 (1 HSPs)
scaffold0006 (191-240)||(127851-127900)
[»] scaffold0045 (1 HSPs)
scaffold0045 (37-81)||(77890-77934)
[»] chr6 (6 HSPs)
chr6 (37-81)||(3095905-3095949)
chr6 (37-81)||(21542351-21542395)
chr6 (31-81)||(3888346-3888396)
chr6 (47-85)||(12461607-12461645)
chr6 (33-81)||(32882873-32882921)
chr6 (37-81)||(35129239-35129283)
[»] scaffold0330 (1 HSPs)
scaffold0330 (31-81)||(3089-3139)
[»] scaffold0009 (1 HSPs)
scaffold0009 (31-81)||(157696-157746)


Alignment Details
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 20643966 - 20643916
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  20643966 ttaaataagataaaagtttgtcttttttgcttatattttgggataaagaaa 20643916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 9957625 - 9957675
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |||||||    
T  9957625 ttaaataagataaaagtttgtcttttttgcttatattttgggacaaagaaa 9957675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 32110954 - 32110904
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||  |||||||||||||||||||||||||||||||||||    
T  32110954 ttaaataggataaatgtttgtcttttttgcttatattttaggataaagaaa 32110904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 7071190 - 7071136
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaagtga 85  Q
    ||||||||||||||| ||||||||||| ||||||||||| | | |||||||||||    
T  7071190 ttaaataagataaaagtttgtctttttcgcttatattttggtacaaagaaagtga 7071136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 8225415 - 8225365
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||| ||||||||||||||||||||||| ||| |||||||    
T  8225415 ttaaatatgataaaagtttgtcttttttgcttatattttgggacaaagaaa 8225365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 8959611 - 8959561
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||| || |||||||||||||||| |||||||||||||||    
T  8959611 ttaaatatgataaaagttggtcttttttgcttataatttaggataaagaaa 8959561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 34425274 - 34425232
Alignment:
Q  39 gataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||||||||||||||||||||||| |||||||    
T  34425274 gataaaagtttgtcttttttgcttatattttaggacaaagaaa 34425232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 39505441 - 39505491
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    |||||||| |||||| ||||||||||||||||||||||| ||| |||||||    
T  39505441 ttaaataaaataaaagtttgtcttttttgcttatattttgggacaaagaaa 39505491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 42273601 - 42273551
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||| ||||||||||||||||||||||| ||| |||||||    
T  42273601 ttaaataggataaaagtttgtcttttttgcttatattttgggacaaagaaa 42273551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 12730196 - 12730246
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||| |||||||||||| |||||||||| ||| |||||||    
T  12730196 ttaaataggataaaagtttgtcttttttacttatattttgggacaaagaaa 12730246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 19413092 - 19413050
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttagga 73  Q
    |||||||| |||||| ||| |||||||||||||||||||||||    
T  19413092 ttaaataaaataaaagtttatcttttttgcttatattttagga 19413050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 842750 - 842794
Alignment:
Q  37 aagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||| ||| ||||||||||||||||||| ||| |||||||    
T  842750 aagataaaagtttatcttttttgcttatattttgggacaaagaaa 842794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 11262068 - 11262112
Alignment:
Q  37 aagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||| |||||||||||| |||||||||| ||| |||||||    
T  11262068 aagataaaagtttgtcttttttacttatattttgggacaaagaaa 11262112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 37522774 - 37522806
Alignment:
Q  37 aagataaaactttgtcttttttgcttatatttt 69  Q
    ||||||||| |||||||||||||||||||||||    
T  37522774 aagataaaagtttgtcttttttgcttatatttt 37522806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 37562946 - 37562978
Alignment:
Q  37 aagataaaactttgtcttttttgcttatatttt 69  Q
    ||||||||| |||||||||||||||||||||||    
T  37562946 aagataaaagtttgtcttttttgcttatatttt 37562978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 4058664 - 4058610
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaagtga 85  Q
    ||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||    
T  4058664 ttaaataggataaaagtttgtcttttttgcttatattttaggacaaagaaagtga 4058610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 7654602 - 7654558
Alignment:
Q  37 aagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  7654602 aagataaaagtttgtcttttttgcttatattttaggataaagaaa 7654558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 17186984 - 17187034
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||| ||||||||||||||||||||||| ||| |||||||    
T  17186984 ttaaataggataaaagtttgtcttttttgcttatattttgggacaaagaaa 17187034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 29203457 - 29203419
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatatttt 69  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  29203457 ttaaataagataaaagtttgtcttttttgcttatatttt 29203419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 2229222 - 2229178
Alignment:
Q  37 aagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||| ||||||||||||||||||||||| ||| |||||||    
T  2229222 aagataaaagtttgtcttttttgcttatattttgggacaaagaaa 2229178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 14332734 - 14332690
Alignment:
Q  37 aagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||| ||||||||||||||||||||||| ||| |||||||    
T  14332734 aagataaaagtttgtcttttttgcttatattttgggacaaagaaa 14332690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 16605037 - 16605087
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    |||||||  |||||| ||||||||||||||||||||||| ||| |||||||    
T  16605037 ttaaatagcataaaagtttgtcttttttgcttatattttgggacaaagaaa 16605087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 35310945 - 35310995
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    |||||||  |||||| |||||||||||||||||||||||| || |||||||    
T  35310945 ttaaatataataaaagtttgtcttttttgcttatattttaagacaaagaaa 35310995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 35529621 - 35529571
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    |||||||  |||||| ||||||||||||||||||||||| ||| |||||||    
T  35529621 ttaaatagaataaaagtttgtcttttttgcttatattttgggacaaagaaa 35529571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 39078107 - 39078057
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||| |||||||||||| |||||||||| ||| |||||||    
T  39078107 ttaaataggataaaagtttgtcttttttacttatattttgggacaaagaaa 39078057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 42915479 - 42915429
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    |||||||  |||||| ||||||||||||||||||||||| ||| |||||||    
T  42915479 ttaaatataataaaagtttgtcttttttgcttatattttgggacaaagaaa 42915429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 50080678 - 50080716
Alignment:
Q  47 tttgtcttttttgcttatattttaggataaagaaagtga 85  Q
    ||||||||||||||||| ||||| |||||||||||||||    
T  50080678 tttgtcttttttgcttacattttgggataaagaaagtga 50080716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 28669177 - 28669221
Alignment:
Q  37 aagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||| |||||| |||||||||||||||| ||| |||||||    
T  28669177 aagataaaaatttgtcctttttgcttatattttgggacaaagaaa 28669221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 41414786 - 41414830
Alignment:
Q  37 aagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||| |||||||||||| |||||||||| ||| |||||||    
T  41414786 aagataaaagtttgtcttttttacttatattttgggacaaagaaa 41414830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 47867854 - 47867810
Alignment:
Q  37 aagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||| ||| ||||||||||||||||||| ||| |||||||    
T  47867854 aagataaaagtttttcttttttgcttatattttgggacaaagaaa 47867810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 55580607 - 55580567
Alignment:
Q  41 taaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||| ||||||||||||||||||||||| ||| |||||||    
T  55580607 taaaagtttgtcttttttgcttatattttgggacaaagaaa 55580567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 34890384 - 34890434
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |||||||    
T  34890384 ttaaataagataaaagtttgtcttttttgcttatattttgggacaaagaaa 34890434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 30576037 - 30576087
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||| ||||||||||||||||||||||| ||| |||||||    
T  30576037 ttaaataggataaaaatttgtcttttttgcttatattttgggacaaagaaa 30576087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 35456234 - 35456284
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||||||||| ||| | |||||| ||||||||||||||||||||||    
T  35456234 ttaaataagataaaaatttattttttttacttatattttaggataaagaaa 35456284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 41755874 - 41755824
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||| |||| |||||||||| |||||||||||||||||||    
T  41755874 ttaaataggataaaaatttgccttttttgctcatattttaggataaagaaa 41755824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 7022588 - 7022632
Alignment:
Q  37 aagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||| ||||||||||||||||||||||| ||| |||||||    
T  7022588 aagataaaagtttgtcttttttgcttatattttgggacaaagaaa 7022632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 7858503 - 7858459
Alignment:
Q  37 aagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||| ||||||||||||||||||||||| ||| |||||||    
T  7858503 aagataaaagtttgtcttttttgcttatattttgggacaaagaaa 7858459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 8107828 - 8107879
Alignment:
Q  31 ttaaataagataaaactttgtc-ttttttgcttatattttaggataaagaaa 81  Q
    ||||||||||||||| |||||| ||||||||||||||||| ||| |||||||    
T  8107828 ttaaataagataaaaatttgtctttttttgcttatattttgggacaaagaaa 8107879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 4047104 - 4047154
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    |||||||  |||||| ||||||||||||||||||||||| ||| |||||||    
T  4047104 ttaaatagaataaaagtttgtcttttttgcttatattttgggacaaagaaa 4047154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 13144171 - 13144209
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatatttt 69  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  13144171 ttaaataggataaaagtttgtcttttttgcttatatttt 13144209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 24892788 - 24892750
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatatttt 69  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  24892788 ttaaataggataaaagtttgtcttttttgcttatatttt 24892750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 35525548 - 35525498
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||| |||||||||||| |||||||||| ||| |||||||    
T  35525548 ttaaataggataaaagtttgtcttttttacttatattttgggacaaagaaa 35525498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 36190721 - 36190671
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||| | ||||||||||||||||||||| ||| |||||||    
T  36190721 ttaaataggataaaagtgtgtcttttttgcttatattttgggacaaagaaa 36190671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 25944528 - 25944478
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |||||||    
T  25944528 ttaaataagataaaagtttgtcttttttgcttatattttgggacaaagaaa 25944478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 21517075 - 21517124
Alignment:
Q  191 aaccagtgtaattgtttcgttaaaaatcgaatgttgatgattgtgccttt 240  Q
    |||||| |||||||||| |||||||| ||| |||||||||||||||||||    
T  21517075 aaccagagtaattgttttgttaaaaaccgagtgttgatgattgtgccttt 21517124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 18102506 - 18102462
Alignment:
Q  37 aagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||| ||||||||||||||||||||||| ||| |||||||    
T  18102506 aagataaaagtttgtcttttttgcttatattttgggacaaagaaa 18102462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 45485930 - 45485886
Alignment:
Q  37 aagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||| ||||||||||||||||||||||| ||| |||||||    
T  45485930 aagataaaattttgtcttttttgcttatatttttggacaaagaaa 45485886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 9158042 - 9157992
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    |||||||  |||||| ||||||||||||| ||||||||| |||||||||||    
T  9158042 ttaaatagaataaaagtttgtcttttttgattatattttgggataaagaaa 9157992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 42045032 - 42045074
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttagga 73  Q
    ||||||||||||||| ||||||||||||  |||||||||||||    
T  42045032 ttaaataagataaaaatttgtcttttttatttatattttagga 42045074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 47778724 - 47778674
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    |||||||  |||||| ||||||||||||||||||||||| ||| |||||||    
T  47778724 ttaaatagaataaaaatttgtcttttttgcttatattttgggacaaagaaa 47778674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 47557933 - 47557974
Alignment:
Q  40 ataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    |||||| ||||||||||||||||||||||| ||| |||||||    
T  47557933 ataaaagtttgtcttttttgcttatattttgggacaaagaaa 47557974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 14805847 - 14805803
Alignment:
Q  37 aagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||| ||||||| ||||||||||||||| ||| |||||||    
T  14805847 aagataaaagtttgtctgttttgcttatattttgggacaaagaaa 14805803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 15252841 - 15252797
Alignment:
Q  37 aagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||| ||||||| ||||||||||||||| ||| |||||||    
T  15252841 aagataaaagtttgtctgttttgcttatattttgggacaaagaaa 15252797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 16562725 - 16562681
Alignment:
Q  37 aagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||| |||||||||||| |||||||||| ||| |||||||    
T  16562725 aagataaaaatttgtcttttttacttatattttgggacaaagaaa 16562681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 16602937 - 16602981
Alignment:
Q  37 aagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||| |||||||||||| |||||||||| ||| |||||||    
T  16602937 aagataaaaatttgtcttttttacttatattttgggacaaagaaa 16602981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 18800912 - 18800960
Alignment:
Q  33 aaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    |||||| |||||| | ||||||||||||||||||||| ||| |||||||    
T  18800912 aaataacataaaagtatgtcttttttgcttatattttgggacaaagaaa 18800960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 19912952 - 19912996
Alignment:
Q  37 aagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||| ||||||||||||  ||||||||| |||||||||||    
T  19912952 aagataaaagtttgtcttttttatttatattttgggataaagaaa 19912996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 187
Target Start/End: Original strand, 21516930 - 21516958
Alignment:
Q  159 ttgttttcaaacatgatattttagcatat 187  Q
    |||||||||||||||||||||||||||||    
T  21516930 ttgttttcaaacatgatattttagcatat 21516958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 30082329 - 30082281
Alignment:
Q  33 aaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    |||||| |||||| || |||||||||||||||||||| ||| |||||||    
T  30082329 aaataacataaaaattggtcttttttgcttatattttgggacaaagaaa 30082281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 14752376 - 14752426
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |||||||    
T  14752376 ttaaataagataaaagtttgtcttttttgcttatattttgggacaaagaaa 14752426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 54465059 - 54465109
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||||||||| ||| ||||||||||||||||||||||| |||||||    
T  54465059 ttaaataagataaaaatttatcttttttgcttatattttaggacaaagaaa 54465109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 120
Target Start/End: Complemental strand, 2927244 - 2927155
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaagtgannnnnnngtacttatattttagaacggagggagta 120  Q
    |||||||  |||||| |||||||||||||||||||||||| || ||||||| |||        ||||||||||| || ||||||||||||    
T  2927244 ttaaatataataaaagtttgtcttttttgcttatattttaagacaaagaaaatgagttttttttacttatatttcaggacggagggagta 2927155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 11054451 - 11054495
Alignment:
Q  37 aagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||| ||||||||||||||||||||||| ||| |||||||    
T  11054451 aagataaaagtttgtcttttttgcttatattttgggacaaagaaa 11054495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 6752623 - 6752573
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||| |||||||||||| |||| ||||||||| |||||||    
T  6752623 ttaaataggataaaagtttgtcttttttacttaaattttaggacaaagaaa 6752573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 7866651 - 7866701
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||| ||||||||||||| ||||||||| ||| |||||||    
T  7866651 ttaaataggataaaagtttgtcttttttgtttatattttgggacaaagaaa 7866701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 22456157 - 22456207
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||| || |||||||||||||||| ||| |||||||||||    
T  22456157 ttaaatatgataaaagttggtcttttttgcttataatttgggataaagaaa 22456207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 22479203 - 22479253
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||| ||||||||||||||||||| ||| ||| |||||||    
T  22479203 ttaaatatgataaaagtttgtcttttttgcttataatttgggacaaagaaa 22479253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 37074914 - 37074864
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||| ||||||||||||||||||||||  ||| |||||||    
T  37074914 ttaaataggataaaagtttgtcttttttgcttatatttcgggacaaagaaa 37074864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 47867083 - 47867137
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaagtga 85  Q
    ||||||| ||||||| |||||||||||| |||| ||||| |||||||||| ||||    
T  47867083 ttaaataggataaaaatttgtcttttttacttacattttgggataaagaaggtga 47867137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 23311736 - 23311780
Alignment:
Q  37 aagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||| |||| |||||||||||||||||| ||| |||||||    
T  23311736 aagataaaagtttgacttttttgcttatattttgggacaaagaaa 23311780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 23910638 - 23910670
Alignment:
Q  37 aagataaaactttgtcttttttgcttatatttt 69  Q
    ||||||||| |||||||||||||||||||||||    
T  23910638 aagataaaaatttgtcttttttgcttatatttt 23910670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 36546523 - 36546479
Alignment:
Q  37 aagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    |||| |||| ||||||||||||||||||||||| ||| |||||||    
T  36546523 aagacaaaagtttgtcttttttgcttatattttgggacaaagaaa 36546479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 36561792 - 36561836
Alignment:
Q  37 aagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    |||| |||| ||||||||||||||||||||||| ||| |||||||    
T  36561792 aagacaaaagtttgtcttttttgcttatattttgggacaaagaaa 36561836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 19264051 - 19264001
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |||||||    
T  19264051 ttaaataagataaaagtttgtcttttttgcttatattttgggacaaagaaa 19264001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 5280689 - 5280739
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||| ||||||||||||||||||||||| ||| |||||||    
T  5280689 ttaaataggataaaaatttgtcttttttgcttatattttgggacaaagaaa 5280739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 18455017 - 18454967
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    |||||||| |||||| ||| ||||||||||||||||||||||| |||||||    
T  18455017 ttaaataaaataaaaatttatcttttttgcttatattttaggacaaagaaa 18454967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 28858261 - 28858211
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||| ||||| ||||||||||||||||||||| |||||||    
T  28858261 ttaaataggataaaagtttgtattttttgcttatattttaggacaaagaaa 28858211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 33198843 - 33198893
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||| ||||||||||||||||||||||| ||| |||||||    
T  33198843 ttaaataggataaaattttgtcttttttgcttatattttgggacaaagaaa 33198893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 3201312 - 3201268
Alignment:
Q  37 aagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| | ||||||||||||||||||||||| |||||||||||    
T  3201312 aagataatagtttgtcttttttgcttatattttgggataaagaaa 3201268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 6110384 - 6110428
Alignment:
Q  37 aagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||| ||||||||||||||||||||||| ||| |||||||    
T  6110384 aagataaaagtttgtcttttttgcttatattttgggacaaagaaa 6110428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 8701553 - 8701503
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    |||||||  |||||| ||||||||||||| |||||||||| ||||||||||    
T  8701553 ttaaatataataaaagtttgtcttttttgtttatattttaagataaagaaa 8701503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 11616975 - 11616925
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||| ||| |||||||| |||||||||||||| |||||||    
T  11616975 ttaaataggataaaagtttatcttttttacttatattttaggacaaagaaa 11616925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 26998288 - 26998238
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||| || |||||||||||||||| ||||||| |||||||    
T  26998288 ttaaatatgataaaagttggtcttttttgcttataatttaggacaaagaaa 26998238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 30752097 - 30752043
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaagtga 85  Q
    ||||||| |||||||  |||||| ||||||||||| ||| |||||||||||||||    
T  30752097 ttaaataggataaaaacttgtctattttgcttataatttgggataaagaaagtga 30752043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 32273642 - 32273592
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||| || |||||||||||||||| ||||||| |||||||    
T  32273642 ttaaatatgataaaagttggtcttttttgcttataatttaggacaaagaaa 32273592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 85
Target Start/End: Complemental strand, 35022832 - 35022794
Alignment:
Q  47 tttgtcttttttgcttatattttaggataaagaaagtga 85  Q
    ||||||||||||||||| ||||||||| |||||||||||    
T  35022832 tttgtcttttttgcttacattttaggacaaagaaagtga 35022794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 38070967 - 38070917
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||| ||||||||||||||||||| ||| ||| |||||||    
T  38070967 ttaaatatgataaaagtttgtcttttttgcttataatttgggacaaagaaa 38070917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 40808921 - 40808971
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    |||||||  |||||| ||||||||||||||||||||||| ||| |||||||    
T  40808921 ttaaatagaataaaaatttgtcttttttgcttatattttgggacaaagaaa 40808971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 45660314 - 45660264
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||| ||||| ||||||||||||||||| ||| |||||||    
T  45660314 ttaaataggataaaagtttgttttttttgcttatattttgggacaaagaaa 45660264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 28599332 - 28599376
Alignment:
Q  37 aagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||| ||||||||||||| ||||||||| ||| |||||||    
T  28599332 aagataaaagtttgtcttttttgattatattttgggacaaagaaa 28599376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 35517099 - 35517067
Alignment:
Q  37 aagataaaactttgtcttttttgcttatatttt 69  Q
    ||||||||| |||||||||||||||||||||||    
T  35517099 aagataaaagtttgtcttttttgcttatatttt 35517067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 41528233 - 41528201
Alignment:
Q  37 aagataaaactttgtcttttttgcttatatttt 69  Q
    ||||||||| |||||||||||||||||||||||    
T  41528233 aagataaaagtttgtcttttttgcttatatttt 41528201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 45085234 - 45085190
Alignment:
Q  37 aagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||| ||| ||||||||||||||||||| ||| |||||||    
T  45085234 aagataaaagtttatcttttttgcttatattttgggacaaagaaa 45085190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 1820367 - 1820317
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||| |||||||||||| ||||||||||||||||||||||    
T  1820367 ttaaataggataaaagtttgtcttttttacttatattttaggataaagaaa 1820317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 6787200 - 6787250
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||| ||||||||||||||||||||||| |||||||||||    
T  6787200 ttaaataggataaaagtttgtcttttttgcttatattttgggataaagaaa 6787250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 15959849 - 15959899
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |||||||    
T  15959849 ttaaataagataaaaatttgtcttttttgcttatattttgggacaaagaaa 15959899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 2126020 - 2125970
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||| ||||||||| |||||||||||| |||||||||||||| |||||||    
T  2126020 ttaaaaaagataaaagtttgtcttttttacttatattttaggacaaagaaa 2125970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 7468162 - 7468212
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||| ||||||||||||||||||||||| ||| |||||||    
T  7468162 ttaaataggataaaagtttgtcttttttgcttatattttgggacaaagaaa 7468212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 28016953 - 28017003
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||| ||||||||||||||||||||||| ||| |||||||    
T  28016953 ttaaataggataaaagtttgtcttttttgcttatattttgggacaaagaaa 28017003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 12449151 - 12449195
Alignment:
Q  37 aagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||| ||||||||||||||||||||||| ||| |||||||    
T  12449151 aagataaaagtttgtcttttttgcttatattttgggacaaagaaa 12449195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 32624190 - 32624234
Alignment:
Q  37 aagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||| ||||||||||||||||||||||| ||| |||||||    
T  32624190 aagataaaagtttgtcttttttgcttatattttgggacaaagaaa 32624234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 39555770 - 39555814
Alignment:
Q  37 aagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||| ||||||||||||||||||||||| ||| |||||||    
T  39555770 aagataaaagtttgtcttttttgcttatattttgggacaaagaaa 39555814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 298876 - 298914
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatatttt 69  Q
    ||||||| ||||||||||||||||||||||||| |||||    
T  298876 ttaaataggataaaactttgtcttttttgcttacatttt 298914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 4672851 - 4672801
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||| ||| ||||||||||||||||||| ||| |||||||    
T  4672851 ttaaataggataaaaatttatcttttttgcttatattttgggacaaagaaa 4672801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 6786781 - 6786739
Alignment:
Q  39 gataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||||||||||||||||||| ||| |||||||    
T  6786781 gataaaagtttgtcttttttgcttatattttgggacaaagaaa 6786739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 32983348 - 32983386
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatatttt 69  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  32983348 ttaaaaaagataaaaatttgtcttttttgcttatatttt 32983386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 33369505 - 33369455
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| |||||||  |||||||||||||||||||| ||||| |||||||    
T  33369505 ttaaataggataaaagcttgtcttttttgcttatattctaggacaaagaaa 33369455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 44149041 - 44149091
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    |||||||  |||||| ||||||||||||||||||||||| ||| |||||||    
T  44149041 ttaaatagaataaaagtttgtcttttttgcttatattttgggacaaagaaa 44149091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 46818720 - 46818770
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||| ||| |||||||||||| |||| |||||||||||||||||    
T  46818720 ttaaatatgattaaagtttgtcttttttacttacattttaggataaagaaa 46818770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 47026446 - 47026396
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||| |||||||||||| |||||||||||| | |||||||    
T  47026446 ttaaataggataaaagtttgtcttttttacttatattttagaacaaagaaa 47026396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 3875232 - 3875268
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatatt 67  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  3875232 ttaaataggataaaaatttgtcttttttgcttatatt 3875268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 28120938 - 28120974
Alignment:
Q  37 aagataaaactttgtcttttttgcttatattttagga 73  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  28120938 aagataaaagtttgtcttttttacttatattttagga 28120974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 35884181 - 35884141
Alignment:
Q  40 ataaaactttgtcttttttgcttatattttaggataaagaa 80  Q
    |||||| || ||||||||||||||||||||| |||||||||    
T  35884181 ataaaagttggtcttttttgcttatattttaagataaagaa 35884141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 43667484 - 43667516
Alignment:
Q  37 aagataaaactttgtcttttttgcttatatttt 69  Q
    ||||||||| |||||||||||||||||||||||    
T  43667484 aagataaaagtttgtcttttttgcttatatttt 43667516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 50369902 - 50369870
Alignment:
Q  49 tgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||||||||||||||||||| |||||||    
T  50369902 tgtcttttttgcttatattttaggacaaagaaa 50369870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 964 - 914
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||| ||||||||||||||||||||||| ||| |||||||    
T  964 ttaaataggataaaagtttgtcttttttgcttatattttgggacaaagaaa 914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 8924 - 8874
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||| ||||||||||||||||||||||| ||| |||||||    
T  8924 ttaaataggataaaagtttgtcttttttgcttatattttgggacaaagaaa 8874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 127851 - 127900
Alignment:
Q  191 aaccagtgtaattgtttcgttaaaaatcgaatgttgatgattgtgccttt 240  Q
    ||||||||||| | ||| |||||||||||| |||||||||||||||||||    
T  127851 aaccagtgtaactattttgttaaaaatcgagtgttgatgattgtgccttt 127900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 77934 - 77890
Alignment:
Q  37 aagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||| ||||||||||||||||||||||| ||| |||||||    
T  77934 aagataaaagtttgtcttttttgcttatattttgggacaaagaaa 77890  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 3095905 - 3095949
Alignment:
Q  37 aagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||| ||||||||||||||||||||||| ||| |||||||    
T  3095905 aagataaaagtttgtcttttttgcttatattttgggacaaagaaa 3095949  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 21542395 - 21542351
Alignment:
Q  37 aagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||| ||||||||||||||||||||||| ||| |||||||    
T  21542395 aagataaaagtttgtcttttttgcttatattttgggacaaagaaa 21542351  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 3888396 - 3888346
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||| || |||||||||||||||| ||||| |||||||||    
T  3888396 ttaaatatgataaaagttggtcttttttgcttataatttagaataaagaaa 3888346  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 12461607 - 12461645
Alignment:
Q  47 tttgtcttttttgcttatattttaggataaagaaagtga 85  Q
    ||||||||||||||||| ||||| |||||||||||||||    
T  12461607 tttgtcttttttgcttacatttttggataaagaaagtga 12461645  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 32882873 - 32882921
Alignment:
Q  33 aaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    |||||| | |||| || |||||||||||||||||||||||| |||||||    
T  32882873 aaataacacaaaagttggtcttttttgcttatattttaggacaaagaaa 32882921  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 35129239 - 35129283
Alignment:
Q  37 aagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||||| |||||||||||||||| |||||| ||| |||||||    
T  35129239 aagataaaagtttgtcttttttgcttgtattttgggacaaagaaa 35129283  T

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Target: scaffold0330 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 3139 - 3089
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    ||||||| ||||||| ||  ||||||||||||||| |||||||||||||||    
T  3139 ttaaatatgataaaagttgatcttttttgcttataatttaggataaagaaa 3089  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 157746 - 157696
Alignment:
Q  31 ttaaataagataaaactttgtcttttttgcttatattttaggataaagaaa 81  Q
    |||||||  |||||| ||||||||||||||||||||||| ||| |||||||    
T  157746 ttaaatagaataaaagtttgtcttttttgcttatattttgggacaaagaaa 157696  T

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