View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6390_low_14 (Length: 246)
Name: NF6390_low_14
Description: NF6390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6390_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 9166291 - 9166513
Alignment:
| Q |
20 |
cttcttatctacttcctcatcttcatcttcctctcctttatcagaggaagga------------tcatcaccagnnnnnnnacggcttctcccaccacct |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
9166291 |
cttcttatctacttcctcatcttcatcttcctctcctttatcagaggaaggaccttcatcatcatcatcaccagtttttttacggcttctcccaccacct |
9166390 |
T |
|
| Q |
108 |
gcgttgctttctttgtcatctaacttccaatgttcaccaaatgcagcaggaccattatttgctgctttcatcatccatctttgatatccatcagcagtct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9166391 |
gcgttgctttctttgtcatctaacttccaatgttcaccaaatgcagcaggaccattatttgctgctttcatcatccatctttgatatccatcagcagtct |
9166490 |
T |
|
| Q |
208 |
ttttcctattattcatcttctct |
230 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
9166491 |
ttttcctattattcatcttctct |
9166513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 9154874 - 9155096
Alignment:
| Q |
20 |
cttcttatctacttcctcatcttcatcttcctctcctttatcagaggaagga------------tcatcaccagnnnnnnnacggcttctcccaccacct |
107 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||| ||| |
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| T |
9154874 |
cttcctatctacttcctcgtcttcatcttcctctcctttatcagaggaaggaccttcatcttcatcatcaccagtctttttacggcctctcccaccccct |
9154973 |
T |
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| Q |
108 |
gcgttgctttctttgtcatctaacttccaatgttcaccaaatgcagcaggaccattatttgctgctttcatcatccatctttgatatccatcagcagtct |
207 |
Q |
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|||||||| || |||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9154974 |
gcgttgctctccttgtcatctaacttcccatgttcaccaaatgcagcaggcccattgtttgctgctttcatcatccatctttgatatccatcagcagttt |
9155073 |
T |
|
| Q |
208 |
ttttcctattattcatcttctct |
230 |
Q |
| |
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|||||||||| |||||||||||| |
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|
| T |
9155074 |
ttttcctatttttcatcttctct |
9155096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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