View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6390_low_15 (Length: 243)

Name: NF6390_low_15
Description: NF6390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6390_low_15
NF6390_low_15
[»] chr8 (3 HSPs)
chr8 (10-240)||(9174321-9174551)
chr8 (112-240)||(9710849-9710977)
chr8 (62-103)||(9178525-9178566)
[»] chr2 (3 HSPs)
chr2 (104-240)||(38618743-38618879)
chr2 (104-168)||(30491046-30491110)
chr2 (104-242)||(17313119-17313257)
[»] chr5 (7 HSPs)
chr5 (104-240)||(20236759-20236895)
chr5 (104-240)||(25760743-25760879)
chr5 (94-242)||(23352572-23352720)
chr5 (193-240)||(13851314-13851361)
chr5 (109-185)||(38679811-38679887)
chr5 (104-168)||(8301138-8301202)
chr5 (104-159)||(13851359-13851414)
[»] chr1 (5 HSPs)
chr1 (112-240)||(45911004-45911132)
chr1 (112-240)||(44713685-44713813)
chr1 (104-240)||(50514844-50514971)
chr1 (104-185)||(41723228-41723308)
chr1 (99-185)||(33801055-33801141)
[»] chr3 (3 HSPs)
chr3 (109-240)||(48094500-48094631)
chr3 (109-240)||(52973043-52973174)
chr3 (104-185)||(26502550-26502631)
[»] chr7 (3 HSPs)
chr7 (103-240)||(41257959-41258096)
chr7 (99-242)||(19215056-19215199)
chr7 (109-185)||(33950633-33950709)
[»] chr4 (2 HSPs)
chr4 (104-185)||(38218626-38218707)
chr4 (104-185)||(56464000-56464081)


Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 9174551 - 9174321
Alignment:
Q  10 tacatgtactagcatctttattacagcataatacacatggttgacatcatcccatttaacgacaatgcaaggacacaatggaggataataaaaggactct 109  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9174551 tacatgtactagcatctttattacagcataacacacatggttgacatcatcccatttaacgacaatgcaaggacacaatggaggataataaaaggactct 9174452  T
Q  110 tacttttcccatcctacagccttctcgcgtgccttataattttgaccaaaataccctttattcatattgtataatcaacacaaaaattggatcctataat 209  Q
    ||||||| ||| |||||||||||||||| |||||| ||||||| ||||||||||||||| |||||||||||||||    |||||||| ||||||||||||    
T  9174451 tactttttccaccctacagccttctcgcatgccttgtaattttaaccaaaataccctttgttcatattgtataattcggacaaaaatcggatcctataat 9174352  T
Q  210 ccgaaatggttagcaaatcaccctgattcat 240  Q
    |||||||||||||||||||||||||||||||    
T  9174351 ccgaaatggttagcaaatcaccctgattcat 9174321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 112 - 240
Target Start/End: Complemental strand, 9710977 - 9710849
Alignment:
Q  112 cttttcccatcctacagccttctcgcgtgccttataattttgaccaaaataccctttattcatattgtataatcaacacaaaaattggatcctataatcc 211  Q
    ||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||| | |  |||||||||||   |||| | | ||||||| ||||||    
T  9710977 cttttcccaccctacagccttctcgcgtgctctataattttgaccaaaataccctttgtccggattgtataatccggacaacattcggatcctttaatcc 9710878  T
Q  212 gaaatggttagcaaatcaccctgattcat 240  Q
    |||||||||||||||||||||| ||||||    
T  9710877 gaaatggttagcaaatcaccctaattcat 9710849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 9178566 - 9178525
Alignment:
Q  62 catttaacgacaatgcaaggacacaatggaggataataaaag 103  Q
    |||| |||||||||||||||||||||||||||| || |||||    
T  9178566 cattcaacgacaatgcaaggacacaatggaggaaaacaaaag 9178525  T

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Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 104 - 240
Target Start/End: Original strand, 38618743 - 38618879
Alignment:
Q  104 gactcttacttttcccatcctacagccttctcgcgtgccttataattttgaccaaaataccctttattcatattgtataatcaacacaaaaattggatcc 203  Q
    |||| |||||||||||| ||||||||||||||||| ||| | | ||||||||||||||||||||| | || |||||||||||   | |||||| ||||||    
T  38618743 gactattacttttcccaccctacagccttctcgcgcgccctgtgattttgaccaaaataccctttgtccagattgtataatccgaataaaaatcggatcc 38618842  T
Q  204 tataatccgaaatggttagcaaatcaccctgattcat 240  Q
     ||||||||||||||||||||||||||||||||||||    
T  38618843 aataatccgaaatggttagcaaatcaccctgattcat 38618879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 104 - 168
Target Start/End: Complemental strand, 30491110 - 30491046
Alignment:
Q  104 gactcttacttttcccatcctacagccttctcgcgtgccttataattttgaccaaaatacccttt 168  Q
    |||| |||||||||||| ||||||||||||||||| ||||| | |||||||||||||||||||||    
T  30491110 gactattacttttcccaccctacagccttctcgcgcgccttgtgattttgaccaaaatacccttt 30491046  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 242
Target Start/End: Complemental strand, 17313257 - 17313119
Alignment:
Q  104 gactcttacttttcccatcctacagccttctcgcgtgccttataattttgaccaaaataccctttattcatattgtataatcaacacaaaaattggatcc 203  Q
    |||| |||||||||||| ||||  ||||||||||| ||| | | |||||||| |||||||||||| |    |||||||||||   ||| || | ||||||    
T  17313257 gactgttacttttcccaccctatcgccttctcgcgcgccctgtgattttgactaaaataccctttgtctggattgtataatccgaacagaattcggatcc 17313158  T
Q  204 tataatccgaaatggttagcaaatcaccctgattcatct 242  Q
    ||||||| |||||| ||| ||||||||| ||||||||||    
T  17313157 tataatctgaaatgattatcaaatcaccttgattcatct 17313119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 104 - 240
Target Start/End: Complemental strand, 20236895 - 20236759
Alignment:
Q  104 gactcttacttttcccatcctacagccttctcgcgtgccttataattttgaccaaaataccctttattcatattgtataatcaacacaaaaattggatcc 203  Q
    |||| |||||||||||| |||||| |||||||||||||| | | |||||||||||||| |||||| |||| |||||||||||   ||||||||  |||||    
T  20236895 gactattacttttcccaccctacaaccttctcgcgtgccctgtgattttgaccaaaattccctttgttcagattgtataatctggacaaaaatctgatcc 20236796  T
Q  204 tataatccgaaatggttagcaaatcaccctgattcat 240  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  20236795 tataatctgaaatggttagcaaatcacactgattcat 20236759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 104 - 240
Target Start/End: Original strand, 25760743 - 25760879
Alignment:
Q  104 gactcttacttttcccatcctacagccttctcgcgtgccttataattttgaccaaaataccctttattcatattgtataatcaacacaaaaattggatcc 203  Q
    |||| |||||||| ||| | |||| |||||||||| ||| ||| ||||||||||||||||||| | | |  |||||||||||   |||||||| ||||||    
T  25760743 gactattactttttccaccttacaaccttctcgcgcgccctatgattttgaccaaaataccctatgtccgaattgtataatctggacaaaaatcggatcc 25760842  T
Q  204 tataatccgaaatggttagcaaatcaccctgattcat 240  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  25760843 tataatccaaaatggttagcaaataaccctgattcat 25760879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 94 - 242
Target Start/End: Complemental strand, 23352720 - 23352572
Alignment:
Q  94 ataataaaaggactcttacttttcccatcctacagccttctcgcgtgccttataattttgaccaaaataccctttattcatattgtataatcaacacaaa 193  Q
    ||||||| | |||| |||||||||||| ||||||||||||||||  ||| | | |||||||| |||||||||||| |||  ||  || ||||   ||| |    
T  23352720 ataataataagactgttacttttcccaccctacagccttctcgcacgccctgtgattttgactaaaataccctttgttcggataatacaatccggacaga 23352621  T
Q  194 aattggatcctataatccgaaatggttagcaaatcaccctgattcatct 242  Q
    | || |||||||| |||||||||| | | ||||||||||||||||||||    
T  23352620 atttagatcctatcatccgaaatgatcatcaaatcaccctgattcatct 23352572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 13851361 - 13851314
Alignment:
Q  193 aaattggatcctataatccgaaatggttagcaaatcaccctgattcat 240  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||    
T  13851361 aaatcggatcctataatccgaaatggttagcaaatcactctgattcat 13851314  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 38679887 - 38679811
Alignment:
Q  109 ttacttttcccatcctacagccttctcgcgtgccttataattttgaccaaaataccctttattcatattgtataatc 185  Q
    |||||||| ||| |||||||| |||||||| ||| ||| ||||||||||||||||||||| | |  |||||||||||    
T  38679887 ttactttttccaccctacagctttctcgcgcgccctatgattttgaccaaaataccctttgtcccgattgtataatc 38679811  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 168
Target Start/End: Complemental strand, 8301202 - 8301138
Alignment:
Q  104 gactcttacttttcccatcctacagccttctcgcgtgccttataattttgaccaaaatacccttt 168  Q
    |||| |||||||||||| ||||||||||||| ||  ||| | | |||||||||||||||||||||    
T  8301202 gactattacttttcccaccctacagccttcttgcacgccctgtgattttgaccaaaatacccttt 8301138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 159
Target Start/End: Complemental strand, 13851414 - 13851359
Alignment:
Q  104 gactcttacttttcccatcctacagccttctcgcgtgccttataattttgaccaaa 159  Q
    |||| |||||||| ||| |||| |||||||||||||||||| | ||||||||||||    
T  13851414 gactattactttttccaccctatagccttctcgcgtgccttgtgattttgaccaaa 13851359  T

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Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 112 - 240
Target Start/End: Complemental strand, 45911132 - 45911004
Alignment:
Q  112 cttttcccatcctacagccttctcgcgtgccttataattttgaccaaaataccctttattcatattgtataatcaacacaaaaattggatcctataatcc 211  Q
    ||||||||| ||||||||||||||||| ||| | | ||||||||||||||||||||| | |  |||||||||||   |||||||| ||||||||||||||    
T  45911132 cttttcccaccctacagccttctcgcgcgccatgtgattttgaccaaaataccctttgtccggattgtataatccggacaaaaatcggatcctataatcc 45911033  T
Q  212 gaaatggttagcaaatcaccctgattcat 240  Q
    |||||||||||||||||| | ||||||||    
T  45911032 gaaatggttagcaaatcatcttgattcat 45911004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 112 - 240
Target Start/End: Complemental strand, 44713813 - 44713685
Alignment:
Q  112 cttttcccatcctacagccttctcgcgtgccttataattttgaccaaaataccctttattcatattgtataatcaacacaaaaattggatcctataatcc 211  Q
    ||||||||| ||||||||||||||||| | | | ||||||||||||||||||||||| | |  |||||||||||   |||||||| ||||||||||||||    
T  44713813 cttttcccaccctacagccttctcgcgcgtcctgtaattttgaccaaaataccctttgtccggattgtataatccggacaaaaatcggatcctataatcc 44713714  T
Q  212 gaaatggttagcaaatcaccctgattcat 240  Q
     |||||| |||||||| ||||||||||||    
T  44713713 aaaatggctagcaaattaccctgattcat 44713685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 240
Target Start/End: Original strand, 50514844 - 50514971
Alignment:
Q  104 gactcttacttttcccatcctacagccttctcgcgtgccttataattttgaccaaaataccctttattcatattgtataatcaacacaaaaattggatcc 203  Q
    |||| |||||||||||| ||||||||||||||||  ||| | | ||||||||||||||||| |||         ||||| ||   ||| |||| ||||||    
T  50514844 gactattacttttcccaccctacagccttctcgcccgccctgtgattttgaccaaaatacctttt---------gtatattccggacagaaatcggatcc 50514934  T
Q  204 tataatccgaaatggttagcaaatcaccctgattcat 240  Q
    ||||||||||||||||||||||||||| || ||||||    
T  50514935 tataatccgaaatggttagcaaatcactctaattcat 50514971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 185
Target Start/End: Original strand, 41723228 - 41723308
Alignment:
Q  104 gactcttacttttcccatcctacagccttctcgcgtgccttataattttgaccaaaataccctttattcatattgtataatc 185  Q
    |||| |||||||||| | ||||||||||||||||| ||||||| |||||||||||||||||| || | |  |||||||||||    
T  41723228 gactattacttttcc-accctacagccttctcgcgcgccttatgattttgaccaaaataccccttgtccggattgtataatc 41723308  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 185
Target Start/End: Original strand, 33801055 - 33801141
Alignment:
Q  99 aaaaggactcttacttttcccatcctacagccttctcgcgtgccttataattttgaccaaaataccctttattcatattgtataatc 185  Q
    |||| |||| |||||||||||| ||||| ||||||||||| | | | | ||||||||||||||||||||| | |  |||||||||||    
T  33801055 aaaaagactattacttttcccaccctactgccttctcgcgcgtcctgtgattttgaccaaaataccctttgtccggattgtataatc 33801141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 109 - 240
Target Start/End: Original strand, 48094500 - 48094631
Alignment:
Q  109 ttacttttcccatcctacagccttctcgcgtgccttataattttgaccaaaataccctttattcatattgtataatcaacacaaaaattggatcctataa 208  Q
    |||||||| ||| |||||| |||||||| | ||| ||| |||||||||||||||| |||| | |  |||||||||||   |||||||  |||||||||||    
T  48094500 ttactttttccaccctacaaccttctcgagcgccctatgattttgaccaaaatactctttgtccggattgtataatccggacaaaaaacggatcctataa 48094599  T
Q  209 tccgaaatggttagcaaatcaccctgattcat 240  Q
    ||||||||||||||||||||||||||||||||    
T  48094600 tccgaaatggttagcaaatcaccctgattcat 48094631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 109 - 240
Target Start/End: Complemental strand, 52973174 - 52973043
Alignment:
Q  109 ttacttttcccatcctacagccttctcgcgtgccttataattttgaccaaaataccctttattcatattgtataatcaacacaaaaattggatcctataa 208  Q
    |||||||| ||| ||||  ||||||||||| ||| | | ||||||||||||||||||||   ||  |||||||||||   |||||||| |||||||||||    
T  52973174 ttactttttccaccctatcgccttctcgcgcgccctgtgattttgaccaaaatacccttcggtcggattgtataatccggacaaaaatcggatcctataa 52973075  T
Q  209 tccgaaatggttagcaaatcaccctgattcat 240  Q
    |||||||||||||| |||||||| ||||||||    
T  52973074 tccgaaatggttagaaaatcaccttgattcat 52973043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 185
Target Start/End: Complemental strand, 26502631 - 26502550
Alignment:
Q  104 gactcttacttttcccatcctacagccttctcgcgtgccttataattttgaccaaaataccctttattcatattgtataatc 185  Q
    |||| |||||||||||| |||||||||||||| || ||| ||| ||||||||||||||||||||| | || |||||||||||    
T  26502631 gactattacttttcccaccctacagccttctcacgcgccctatgattttgaccaaaataccctttgtccagattgtataatc 26502550  T

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Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 103 - 240
Target Start/End: Complemental strand, 41258096 - 41257959
Alignment:
Q  103 ggactcttacttttcccatcctacagccttctcgcgtgccttataattttgaccaaaataccctttattcatattgtataatcaacacaaaaattggatc 202  Q
    ||||| |||||||||||| ||||||||||||||||| ||| | | ||||||||||||||||||||| |    ||| ||||||    |||||||| |||||    
T  41258096 ggactattacttttcccaccctacagccttctcgcgcgccctgtgattttgaccaaaataccctttgtctggattatataattcggacaaaaatcggatc 41257997  T
Q  203 ctataatccgaaatggttagcaaatcaccctgattcat 240  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  41257996 ctataatccgaaatggttagcaaatcacattgattcat 41257959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 99 - 242
Target Start/End: Original strand, 19215056 - 19215199
Alignment:
Q  99 aaaaggactcttacttttcccatcctacagccttctcgcgtgccttataattttgaccaaaataccctttattcatattgtataatcaacacaaaaattg 198  Q
    |||| |||| ||||||||||||||||||||||||||| || ||| | | |||||||||||||||||||||||    ||  || ||||   ||| || | |    
T  19215056 aaaaagactgttacttttcccatcctacagccttctcacgcgccctgtgattttgaccaaaataccctttatctggataatacaatccggacagaattcg 19215155  T
Q  199 gatcctataatccgaaatggttagcaaatcaccctgattcatct 242  Q
    ||||||||||||||||| | | | ||||||||||||||||||||    
T  19215156 gatcctataatccgaaacgatcatcaaatcaccctgattcatct 19215199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 33950633 - 33950709
Alignment:
Q  109 ttacttttcccatcctacagccttctcgcgtgccttataattttgaccaaaataccctttattcatattgtataatc 185  Q
    ||||||||||||  |||||||||||||||| ||| | | ||||||||||||||||| ||| | |  |||||||||||    
T  33950633 ttacttttcccactctacagccttctcgcgcgccctgtgattttgaccaaaataccttttgtccggattgtataatc 33950709  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 185
Target Start/End: Complemental strand, 38218707 - 38218626
Alignment:
Q  104 gactcttacttttcccatcctacagccttctcgcgtgccttataattttgaccaaaataccctttattcatattgtataatc 185  Q
    |||| |||||||||||| ||||||||||||||||| ||| ||| ||||||||||||||||||||| |||  |||||||||||    
T  38218707 gactattacttttcccaccctacagccttctcgcgcgccctatgattttgaccaaaataccctttgttcggattgtataatc 38218626  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 185
Target Start/End: Complemental strand, 56464081 - 56464000
Alignment:
Q  104 gactcttacttttcccatcctacagccttctcgcgtgccttataattttgaccaaaataccctttattcatattgtataatc 185  Q
    |||| ||| |||||||| ||||||||||||||| | ||| | | ||||||||||||||||||||| | |  |||||||||||    
T  56464081 gactattatttttcccaccctacagccttctcgtgcgccctgtgattttgaccaaaataccctttgtccggattgtataatc 56464000  T

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