View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6390_low_19 (Length: 228)
Name: NF6390_low_19
Description: NF6390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6390_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 30714981 - 30715090
Alignment:
| Q |
18 |
attagttaaaggagaaaaacataaataaatctctcgtgttaataccatgggaactccaacgctgatttctactactaagccatatcaacaaatttgaatt |
117 |
Q |
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| T |
30714981 |
attagttaaaggagaaaaacataaataaatctctcgtgttaataccatgggaactccaacgctgatttctactactcagccatatcaacaaatttgaatt |
30715080 |
T |
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| Q |
118 |
atctaccacg |
127 |
Q |
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| T |
30715081 |
ttgtaccacg |
30715090 |
T |
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Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 30733355 - 30733440
Alignment:
| Q |
42 |
ataaatctctcgtgttaataccatgggaactccaacgctgatttctactactaagccatatcaacaaatttgaattatctaccacg |
127 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| |
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| T |
30733355 |
ataaatctcgcatgttaataccatgggaactccaacgctgatttctaccactcggccatatcaacaaatttgaattttctaccacg |
30733440 |
T |
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