View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6390_low_2 (Length: 423)
Name: NF6390_low_2
Description: NF6390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6390_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 414
Target Start/End: Original strand, 14514625 - 14515022
Alignment:
| Q |
18 |
gtacttgctcaattacttgcaaagatttataattttagatgtgagaatgaacatataattttcatcaagcaatctaaggcattagttcatgaagatttta |
117 |
Q |
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| T |
14514625 |
gtacttgcacaattacttgcaaagatttgtaattttagatgtgagaatgaacatataattttcgacaagcaatctaaggcattagttcatgaagatttta |
14514724 |
T |
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| Q |
118 |
aagtcga--ttgaagaaatcttttgaatgcaaaaaactaacgacatcctatgcccaaatt-aatgtacctctatgtgtgaaaattagcatttctttttcc |
214 |
Q |
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| T |
14514725 |
aagtcgagattgaagaaatcttttgaatgcaaaaaactaacgacatcctatgcccaaatttaatgcacctctatgtgtgaaaattagcatttctttttcc |
14514824 |
T |
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| Q |
215 |
ccatcctacacaattctaaaaatccgttagtttttatgttttcttttgaaactggaagtgtccttctcgaaagttaaaggcgtctcacatattatcctta |
314 |
Q |
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| T |
14514825 |
c-attctacacaattctaaaaatccgttagtttttatgttttcttttggaacgggaagtgttcttctcgaaagttaaagacgtctcacatattatcctta |
14514923 |
T |
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| Q |
315 |
catgagaaatattaacgaatgcatccgatgcactgtttaagaagctttaatagtaaattttcataaaaatatgcacaataccgttcatccaacttcatct |
414 |
Q |
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|||||||||| ||||||| ||| | |||||||| |||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
14514924 |
catgagaaatgttaacgagtgcccctgatgcactctttaagcaactttaatagtaaatttt-ataaaaatatgcacaataccgttcatccaacttcatct |
14515022 |
T |
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