View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6390_low_4 (Length: 363)

Name: NF6390_low_4
Description: NF6390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6390_low_4
NF6390_low_4
[»] chr4 (31 HSPs)
chr4 (45-363)||(1312829-1313143)
chr4 (76-206)||(19429728-19429858)
chr4 (85-173)||(28406940-28407028)
chr4 (76-206)||(6987662-6987792)
chr4 (76-196)||(2996592-2996712)
chr4 (65-144)||(20936212-20936291)
chr4 (84-206)||(11264328-11264450)
chr4 (87-201)||(24370877-24370993)
chr4 (85-218)||(37575845-37575978)
chr4 (94-138)||(3637372-3637416)
chr4 (76-112)||(14011253-14011289)
chr4 (90-202)||(23676730-23676841)
chr4 (82-206)||(27123273-27123397)
chr4 (84-200)||(33534096-33534212)
chr4 (88-164)||(35734191-35734267)
chr4 (90-202)||(45128235-45128347)
chr4 (52-111)||(7694026-7694085)
chr4 (127-202)||(18628478-18628553)
chr4 (52-111)||(18628559-18628618)
chr4 (96-159)||(52419586-52419648)
chr4 (76-111)||(53792590-53792625)
chr4 (140-206)||(2977897-2977963)
chr4 (52-206)||(28300220-28300374)
chr4 (77-111)||(35064875-35064909)
chr4 (82-112)||(45927374-45927404)
chr4 (57-111)||(53673674-53673728)
chr4 (145-206)||(2811559-2811620)
chr4 (85-206)||(6428046-6428167)
chr4 (77-137)||(51210444-51210505)
chr4 (76-196)||(21157787-21157907)
chr4 (84-112)||(29467639-29467667)
[»] chr5 (29 HSPs)
chr5 (76-195)||(37611147-37611266)
chr5 (76-195)||(37787877-37787996)
chr5 (76-206)||(17368695-17368821)
chr5 (78-203)||(8089957-8090082)
chr5 (83-206)||(499652-499775)
chr5 (76-206)||(12459922-12460052)
chr5 (82-164)||(37526162-37526244)
chr5 (82-164)||(37690599-37690681)
chr5 (82-199)||(1899179-1899295)
chr5 (65-185)||(25720359-25720479)
chr5 (77-112)||(28413299-28413334)
chr5 (76-185)||(7984988-7985097)
chr5 (76-206)||(36318793-36318923)
chr5 (82-164)||(37588323-37588405)
chr5 (90-204)||(38728435-38728549)
chr5 (77-124)||(31071259-31071306)
chr5 (76-158)||(4619726-4619808)
chr5 (90-195)||(9106854-9106960)
chr5 (84-206)||(28586687-28586809)
chr5 (52-186)||(29588874-29589007)
chr5 (76-130)||(33533536-33533590)
chr5 (78-111)||(10272447-10272480)
chr5 (52-133)||(25461310-25461391)
chr5 (90-151)||(37794674-37794735)
chr5 (150-206)||(10771809-10771865)
chr5 (169-205)||(22209746-22209782)
chr5 (98-206)||(29336671-29336779)
chr5 (76-108)||(30994129-30994161)
chr5 (52-108)||(35553207-35553263)
[»] chr1 (35 HSPs)
chr1 (52-196)||(31517671-31517815)
chr1 (55-138)||(17778955-17779038)
chr1 (100-158)||(42757146-42757204)
chr1 (90-198)||(5591896-5592003)
chr1 (76-144)||(35925709-35925777)
chr1 (96-158)||(4481969-4482031)
chr1 (76-206)||(6292512-6292641)
chr1 (122-207)||(4549461-4549546)
chr1 (77-185)||(4768771-4768879)
chr1 (76-148)||(10439705-10439777)
chr1 (92-148)||(17420238-17420294)
chr1 (76-192)||(35058367-35058483)
chr1 (76-200)||(37593611-37593735)
chr1 (82-158)||(37811877-37811953)
chr1 (76-111)||(14629982-14630017)
chr1 (86-201)||(27807144-27807259)
chr1 (127-182)||(43371836-43371891)
chr1 (77-199)||(28482161-28482283)
chr1 (133-215)||(41638220-41638302)
chr1 (76-122)||(45975709-45975755)
chr1 (131-201)||(46504144-46504214)
chr1 (83-144)||(4699598-4699659)
chr1 (76-125)||(5047165-5047214)
chr1 (93-138)||(7357491-7357536)
chr1 (76-113)||(7472330-7472367)
chr1 (84-205)||(10199330-10199451)
chr1 (100-201)||(38170616-38170717)
chr1 (81-174)||(43333705-43333798)
chr1 (121-206)||(51929383-51929468)
chr1 (82-202)||(1662598-1662718)
chr1 (90-206)||(4033938-4034053)
chr1 (76-120)||(6102173-6102217)
chr1 (90-202)||(10280682-10280794)
chr1 (150-206)||(24460322-24460378)
chr1 (51-111)||(34179888-34179948)
[»] chr3 (25 HSPs)
chr3 (82-206)||(21574515-21574641)
chr3 (82-164)||(14548684-14548766)
chr3 (76-164)||(50952352-50952440)
chr3 (76-202)||(24281066-24281192)
chr3 (95-206)||(20194954-20195065)
chr3 (84-206)||(11253528-11253650)
chr3 (58-196)||(37273135-37273273)
chr3 (52-137)||(2201123-2201208)
chr3 (88-185)||(38318991-38319088)
chr3 (97-204)||(24624250-24624357)
chr3 (54-164)||(25182950-25183061)
chr3 (90-185)||(26330265-26330360)
chr3 (96-159)||(47132033-47132096)
chr3 (76-147)||(48048962-48049033)
chr3 (76-206)||(30573836-30573965)
chr3 (76-109)||(482810-482843)
chr3 (82-139)||(1816608-1816665)
chr3 (52-137)||(43115051-43115136)
chr3 (169-206)||(51929278-51929315)
chr3 (122-206)||(3775772-3775856)
chr3 (76-144)||(23808047-23808115)
chr3 (76-148)||(27290880-27290952)
chr3 (122-206)||(40880869-40880953)
chr3 (76-159)||(46031009-46031093)
chr3 (114-206)||(50211792-50211884)
[»] chr7 (22 HSPs)
chr7 (82-212)||(22387811-22387941)
chr7 (84-206)||(12234810-12234932)
chr7 (77-201)||(25670512-25670636)
chr7 (95-196)||(36598287-36598388)
chr7 (122-206)||(23214920-23215004)
chr7 (76-206)||(33894646-33894776)
chr7 (90-196)||(44808191-44808297)
chr7 (54-131)||(6552288-6552365)
chr7 (90-212)||(48157033-48157157)
chr7 (77-137)||(2767168-2767228)
chr7 (78-162)||(22551370-22551454)
chr7 (76-164)||(45859490-45859577)
chr7 (167-206)||(1418529-1418568)
chr7 (76-159)||(39360042-39360125)
chr7 (75-174)||(48131571-48131670)
chr7 (96-205)||(425745-425855)
chr7 (76-206)||(12792419-12792549)
chr7 (98-144)||(19719047-19719093)
chr7 (77-131)||(35267382-35267436)
chr7 (52-145)||(12110355-12110448)
chr7 (84-148)||(44615083-44615147)
chr7 (82-206)||(46082061-46082185)
[»] chr2 (36 HSPs)
chr2 (76-202)||(9478318-9478444)
chr2 (94-204)||(39621988-39622098)
chr2 (77-158)||(35555147-35555228)
chr2 (151-206)||(15370244-15370299)
chr2 (91-206)||(43456628-43456743)
chr2 (76-206)||(15120202-15120332)
chr2 (88-184)||(787363-787459)
chr2 (76-144)||(26857093-26857161)
chr2 (122-206)||(28803451-28803535)
chr2 (77-137)||(41042012-41042072)
chr2 (77-148)||(43065429-43065500)
chr2 (100-201)||(5902477-5902576)
chr2 (76-137)||(34652026-34652087)
chr2 (76-205)||(35378938-35379067)
chr2 (90-186)||(38388719-38388816)
chr2 (122-206)||(13866943-13867027)
chr2 (91-206)||(35485951-35486067)
chr2 (131-207)||(35809941-35810017)
chr2 (76-138)||(3611245-3611308)
chr2 (169-208)||(5043479-5043518)
chr2 (76-159)||(14299599-14299682)
chr2 (52-206)||(8017429-8017583)
chr2 (76-130)||(16867758-16867812)
chr2 (76-118)||(24098121-24098163)
chr2 (92-186)||(27699470-27699564)
chr2 (81-159)||(28677627-28677705)
chr2 (91-148)||(33256774-33256831)
chr2 (85-206)||(41032876-41032997)
chr2 (84-144)||(1647263-1647323)
chr2 (52-148)||(1742011-1742107)
chr2 (76-112)||(3235399-3235435)
chr2 (90-206)||(10285893-10286009)
chr2 (82-158)||(27237862-27237938)
chr2 (76-120)||(29628750-29628794)
chr2 (76-144)||(33941928-33941996)
chr2 (57-109)||(36852472-36852524)
[»] chr8 (28 HSPs)
chr8 (76-186)||(7918387-7918497)
chr8 (79-164)||(30918135-30918219)
chr8 (85-206)||(43368621-43368742)
chr8 (76-203)||(43504770-43504897)
chr8 (77-202)||(3536870-3536995)
chr8 (85-203)||(6950350-6950468)
chr8 (142-212)||(14926897-14926967)
chr8 (88-185)||(30191083-30191180)
chr8 (56-156)||(779032-779132)
chr8 (98-206)||(2487929-2488037)
chr8 (52-111)||(28769355-28769414)
chr8 (127-206)||(1561347-1561426)
chr8 (95-206)||(2091801-2091912)
chr8 (127-206)||(6526173-6526252)
chr8 (52-111)||(8062324-8062383)
chr8 (76-111)||(25869282-25869317)
chr8 (76-131)||(37353245-37353300)
chr8 (52-111)||(38036128-38036187)
chr8 (54-113)||(42370375-42370434)
chr8 (90-137)||(43704366-43704413)
chr8 (76-186)||(11569398-11569508)
chr8 (85-175)||(14949894-14949984)
chr8 (100-202)||(39881646-39881748)
chr8 (125-186)||(7918722-7918783)
chr8 (317-362)||(8060658-8060703)
chr8 (99-164)||(41442416-41442481)
chr8 (76-159)||(10120775-10120859)
chr8 (84-112)||(31705112-31705140)
[»] chr6 (29 HSPs)
chr6 (76-186)||(34939763-34939873)
chr6 (76-201)||(2455829-2455954)
chr6 (77-205)||(32171487-32171615)
chr6 (79-146)||(11393910-11393977)
chr6 (76-137)||(4420662-4420723)
chr6 (85-148)||(725634-725697)
chr6 (127-206)||(26559160-26559239)
chr6 (100-206)||(103474-103579)
chr6 (121-206)||(20861619-20861704)
chr6 (95-148)||(22743519-22743572)
chr6 (79-144)||(34633106-34633171)
chr6 (82-206)||(2460072-2460196)
chr6 (52-144)||(31624085-31624177)
chr6 (52-206)||(7785665-7785817)
chr6 (76-111)||(17241268-17241303)
chr6 (80-206)||(30863269-30863395)
chr6 (90-148)||(31420978-31421036)
chr6 (65-138)||(3528811-3528884)
chr6 (169-206)||(32205934-32205971)
chr6 (91-156)||(32577957-32578022)
chr6 (90-159)||(33498652-33498721)
chr6 (55-111)||(835265-835321)
chr6 (79-159)||(2023593-2023673)
chr6 (52-112)||(3168276-3168336)
chr6 (82-206)||(7148691-7148815)
chr6 (79-159)||(8147034-8147113)
chr6 (122-158)||(8348291-8348327)
chr6 (86-206)||(24332967-24333087)
chr6 (52-148)||(28641728-28641824)
[»] scaffold0608 (1 HSPs)
scaffold0608 (96-158)||(9606-9668)
[»] scaffold0311 (1 HSPs)
scaffold0311 (88-185)||(10559-10656)


Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 45 - 363
Target Start/End: Original strand, 1312829 - 1313143
Alignment:
Q  45 tgtaacctaagctataaacagttttcatgctctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaag 144  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  1312829 tgtaacctaagctataaacagttttcatggtctatcttggagagtttatggaaataagctgaaaacagtttatgaatatgtaataagttgttttcgtaaa 1312928  T
Q  145 ctctatcaaacagtcacacacatgcttatgccagtagataagggcaaataagtcaatccaaaaaagccattagttccataagtatcacaaccttcagggt 244  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1312929 ctctatcaaacagtcacacacatgcttatgccagtagataagtgcaaataagtcaatccaaaaaagccattagttccataagtatcacaaccttcaggg- 1313027  T
Q  245 aaactaaacatcttaattaagtacttataacatga-ttttttatcgtatcgtcaaattgttttatgcgttgtaaagttataacttataagatgttttcat 343  Q
        |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1313028 ----taaacatcttaattaagtgcttataacatgatttttttatcgtatcgtcaaattgttttatgcgttgtaaagttataacttataagatgttttcat 1313123  T
Q  344 tggcaatcttagagagcttt 363  Q
    ||||||||||||||||||||    
T  1313124 tggcaatcttagagagcttt 1313143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 76 - 206
Target Start/End: Original strand, 19429728 - 19429858
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgc 175  Q
    ||||| ||||||| |||||||||||||||||||||||  ||||   ||||||| || |||||| ||||| |||  |||||| || ||||  |||||||||    
T  19429728 ctatcctggagagcttatggaaataagctgaaaacagcttatggcaatgtaatgagctgtttttgtaagatcttccaaacaatctcacatgtgcttatgc 19429827  T
Q  176 cagtagataagggcaaataagtcaatccaaa 206  Q
     ||||||||||  |||||||||| |||||||    
T  19429828 gagtagataagttcaaataagtcgatccaaa 19429858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 28406940 - 28407028
Alignment:
Q  85 agagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttat 173  Q
    |||| |||||||||||||||| ||| ||| ||||||||||| || |||||||| |||||||||| |||| ||||| |||| ||| ||||    
T  28406940 agagcttatggaaataagctgcaaatagtttatgaatatgtcatgagttgtttccgtaagctctctcaaccagtctcacaaatgtttat 28407028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 76 - 206
Target Start/End: Complemental strand, 6987792 - 6987662
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgc 175  Q
    ||||| ||||||| ||||||||||||| |||||| ||| |||| | |||| ||||||||| | | ||||||||  ||||||||| |||| |  |||||||    
T  6987792 ctatcctggagagcttatggaaataagttgaaaatagtttatggacatgtcataagttgtatccataagctctcccaaacagtctcacaaacacttatgc 6987693  T
Q  176 cagtagataagggcaaataagtcaatccaaa 206  Q
     |||||||||   ||| ||||||||| ||||    
T  6987692 tagtagataaactcaattaagtcaatacaaa 6987662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 76 - 196
Target Start/End: Original strand, 2996592 - 2996712
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgc 175  Q
    |||||||||||||  |||| ||||||| |||||| ||  |||| | |||| ||||||||||||| |||||||| |||||||||| || |  ||||||||     
T  2996592 ctatcttggagagcgtatgaaaataagttgaaaaaagcttatggacatgtcataagttgttttcataagctctctcaaacagtctcaaaagtgcttatgt 2996691  T
Q  176 cagtagataagggcaaataag 196  Q
    || || |||||  ||||||||    
T  2996692 caataaataagttcaaataag 2996712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 144
Target Start/End: Complemental strand, 20936291 - 20936212
Alignment:
Q  65 gttttcatgctctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaag 144  Q
    ||||||||  |||||| ||||||| ||||||||||||| |||||||||  |||||| || | ||||||||||||| ||||    
T  20936291 gttttcatattctatcctggagagattatggaaataaggtgaaaacagcttatgaacatatcataagttgttttcataag 20936212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 206
Target Start/End: Original strand, 11264328 - 11264450
Alignment:
Q  84 gagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagat 183  Q
    ||||| ||||||||||||| |||||||||| |||| | |||| |||||||| ||   || |||||  ||||||||| |||| ||| |||||| |||||||    
T  11264328 gagagcttatggaaataagttgaaaacagtttatggacatgtcataagttgattctatatgctctcccaaacagtctcacagatgtttatgctagtagat 11264427  T
Q  184 aagggcaaataagtcaatccaaa 206  Q
    |    |||||||| |||||||||    
T  11264428 agactcaaataagccaatccaaa 11264450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 201
Target Start/End: Complemental strand, 24370993 - 24370877
Alignment:
Q  87 agtttatggaaataagctgaaaacagtctatgaata--tgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagata 184  Q
    ||||||| |||||||||||||||| |  |||| |||  ||| ||||||||||| | |||| | ||||||||| || ||||  ||||||||| | ||||||    
T  24370993 agtttatagaaataagctgaaaacggcttatgtatacatgtcataagttgtttccataagttttatcaaacattctcacatgtgcttatgcgaatagata 24370894  T
Q  185 agggcaaataagtcaat 201  Q
    ||  |||||||||||||    
T  24370893 agctcaaataagtcaat 24370877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 218
Target Start/End: Complemental strand, 37575978 - 37575845
Alignment:
Q  85 agagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagata 184  Q
    ||||||||||||||| |||||||||||   ||||| ||||| ||||||| ||||| |||| ||| ||||||| |  |||    | |||||| || |||||    
T  37575978 agagtttatggaaatgagctgaaaacaacttatgagtatgttataagttattttcataagttctctcaaacaatgtcacgagagtttatgctagcagata 37575879  T
Q  185 agggcaaataagtcaatccaaaaaagccattagt 218  Q
    |   |||||||||||||||||| ||||| |||||    
T  37575878 aactcaaataagtcaatccaaacaagcctttagt 37575845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 3637416 - 3637372
Alignment:
Q  94 ggaaataagctgaaaacagtctatgaatatgtaataagttgtttt 138  Q
    |||||||||||||||||||| ||||||||||| | ||||||||||    
T  3637416 ggaaataagctgaaaacagtttatgaatatgtcacaagttgtttt 3637372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 14011253 - 14011289
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacag 112  Q
    ||||||||||||| |||||||||||||||||||||||    
T  14011253 ctatcttggagagcttatggaaataagctgaaaacag 14011289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 202
Target Start/End: Original strand, 23676730 - 23676841
Alignment:
Q  90 ttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggc 189  Q
    ||||||||||||||| |||||||| |||  |||||  ||||||||||| | |||||| | ||||||| ||||| |  | ||||| | ||||||||||  |    
T  23676730 ttatggaaataagcttaaaacagt-tatagatatgccataagttgtttccataagctatctcaaacaatcacaaaagtacttatacaagtagataagttc 23676828  T
Q  190 aaataagtcaatc 202  Q
    |||||||||||||    
T  23676829 aaataagtcaatc 23676841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 206
Target Start/End: Complemental strand, 27123397 - 27123273
Alignment:
Q  82 tggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtag 181  Q
    ||||||| ||||||||||||| ||||||||   ||   | |||| ||||||||||| | |||||||| |||||||||| ||||  | ||||||| |||      
T  27123397 tggagagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatgctagttt 27123298  T
Q  182 ataagggcaaataagtcaatccaaa 206  Q
    |||||  ||||||||| ||||||||    
T  27123297 ataagctcaaataagttaatccaaa 27123273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 200
Target Start/End: Complemental strand, 33534212 - 33534096
Alignment:
Q  84 gagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagat 183  Q
    ||||| ||||| ||||||||||||||||   |||| |||||| | || |||||||| |||||||| ||||| | || ||||  | |||||| || |||||    
T  33534212 gagagcttatgaaaataagctgaaaacaacttatggatatgtcacaatttgttttcataagctctctcaaatactctcacaagtacttatgtcactagat 33534113  T
Q  184 aagggcaaataagtcaa 200  Q
    |||  ||||||||||||    
T  33534112 aagctcaaataagtcaa 33534096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 164
Target Start/End: Original strand, 35734191 - 35734267
Alignment:
Q  88 gtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacaca 164  Q
    |||||||||||||||||||| ||| |  ||| | |||||||||||||||| | || ||||| |||||||||| ||||    
T  35734191 gtttatggaaataagctgaacacaattaatggacatgtaataagttgtttccctatgctctttcaaacagtctcaca 35734267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 202
Target Start/End: Complemental strand, 45128347 - 45128235
Alignment:
Q  90 ttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggc 189  Q
    |||||||||||||||||||||||   ||| | |||  || |||||||| | |||||||| ||||||| |  ||||  || ||||||| |||||||||  |    
T  45128347 ttatggaaataagctgaaaacagctcatggacatgatatcagttgtttccataagctctctcaaacaatatcacatgtggttatgccggtagataagttc 45128248  T
Q  190 aaataagtcaatc 202  Q
    |||||||||||||    
T  45128247 aaataagtcaatc 45128235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 7694085 - 7694026
Alignment:
Q  52 taagctataaacagttttcatgctctatcttggagagtttatggaaataagctgaaaaca 111  Q
    |||||||||| | ||||||||    |||| ||||||||||||||||||||||||||||||    
T  7694085 taagctataagctgttttcataagttatcctggagagtttatggaaataagctgaaaaca 7694026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 18628553 - 18628478
Alignment:
Q  127 ataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggcaaataagtcaatc 202  Q
    ||||||||||||| ||||||||  ||||||||| ||||  || ||||| |||||||||||  |||||| |||||||    
T  18628553 ataagttgttttcataagctctcccaaacagtctcacaagtgtttatgtcagtagataagctcaaatacgtcaatc 18628478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 18628618 - 18628559
Alignment:
Q  52 taagctataaacagttttcatgctctatcttggagagtttatggaaataagctgaaaaca 111  Q
    |||| ||||||| ||||||||    |||||||||||| ||||||||||||||||||||||    
T  18628618 taagttataaactgttttcataagttatcttggagagcttatggaaataagctgaaaaca 18628559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 159
Target Start/End: Complemental strand, 52419648 - 52419586
Alignment:
Q  96 aaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtc 159  Q
    |||||||||||||  ||| |||||| |||||||||||||||||| |||| ||| ||||||||||    
T  52419648 aaataagctgaaat-agtttatgaacatgtaataagttgttttcataaggtctctcaaacagtc 52419586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 111
Target Start/End: Original strand, 53792590 - 53792625
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaaca 111  Q
    ||||||||||||||||||| ||||||||||||||||    
T  53792590 ctatcttggagagtttatgaaaataagctgaaaaca 53792625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 2977963 - 2977897
Alignment:
Q  140 gtaagctctatcaaacagtcacacacatgcttatgccagtagataagggcaaataagtcaatccaaa 206  Q
    ||||||||| | |||||||| ||||| ||||||||||| ||||| ||  ||||||||| ||||||||    
T  2977963 gtaagctctcttaaacagtctcacacgtgcttatgccactagatcagctcaaataagttaatccaaa 2977897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 206
Target Start/End: Complemental strand, 28300374 - 28300220
Alignment:
Q  52 taagctataaacagttttcatgctctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatc 151  Q
    ||||||||||||  |||||||   |||||||| |||| ||||| ||||||| ||||||||   || ||| |||| ||| | ||||||| |||  ||| ||    
T  28300374 taagctataaactattttcataggctatcttgaagagcttatgaaaataagttgaaaacaacttaagaacatgtcataggctgttttcataaattctctc 28300275  T
Q  152 aaacagtcacacacatgcttatgccagtagataagggcaaataagtcaatccaaa 206  Q
    || |||||||||| || |  |||| ||||||||||  |||| |||| ||||||||    
T  28300274 aatcagtcacacaaattccaatgcaagtagataagttcaaaaaagttaatccaaa 28300220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 111
Target Start/End: Original strand, 35064875 - 35064909
Alignment:
Q  77 tatcttggagagtttatggaaataagctgaaaaca 111  Q
    |||| ||||||||||||||||||||||||||||||    
T  35064875 tatcatggagagtttatggaaataagctgaaaaca 35064909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Original strand, 45927374 - 45927404
Alignment:
Q  82 tggagagtttatggaaataagctgaaaacag 112  Q
    |||||||||||||||||||||||||||||||    
T  45927374 tggagagtttatggaaataagctgaaaacag 45927404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 53673728 - 53673674
Alignment:
Q  57 tataaacagttttcatgctctatcttggagagtttatggaaataagctgaaaaca 111  Q
    ||||||| ||||||||   ||||||||||||| ||||| ||||||||||||||||    
T  53673728 tataaactgttttcataagctatcttggagagcttatgtaaataagctgaaaaca 53673674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 2811559 - 2811620
Alignment:
Q  145 ctctatcaaacagtcacacacatgcttatgccagtagataagggcaaataagtcaatccaaa 206  Q
    |||| |||||||||| || | ||||||||||||||||||||   ||||||||||||| ||||    
T  2811559 ctctctcaaacagtctcataaatgcttatgccagtagataacctcaaataagtcaattcaaa 2811620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 206
Target Start/End: Original strand, 6428046 - 6428167
Alignment:
Q  85 agagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagata 184  Q
    |||| ||||||||||| ||| ||| ||   |||| | |||| ||||||||||||| ||| |||| |||||| ||| ||||  ||||||| ||| || |||    
T  6428046 agagcttatggaaatatgcttaaatcaacttatggacatgtcataagttgttttcataatctctctcaaactgtctcacaagtgcttataccaatatata 6428145  T
Q  185 agggcaaataagtcaatccaaa 206  Q
    ||  ||||||||||||| ||||    
T  6428146 agctcaaataagtcaattcaaa 6428167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 51210505 - 51210444
Alignment:
Q  77 tatcttggagagtttatggaaataagctg-aaaacagtctatgaatatgtaataagttgttt 137  Q
    |||||||||||||||||| |||||||||| |||| ||| |||| | ||||| ||||||||||    
T  51210505 tatcttggagagtttatgaaaataagctgaaaaatagtttatgcacatgtagtaagttgttt 51210444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 196
Target Start/End: Original strand, 21157787 - 21157907
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgc 175  Q
    ||||| || |||| ||||||||||||||| |||||||  | || | |||| ||||| |||||  |||||||||  |||||||||  |||  ||||||||     
T  21157787 ctatcctgaagagcttatggaaataagctaaaaacagcttttgtaaatgtcataagctgtttctgtaagctcttccaaacagtcttacaagtgcttatgt 21157886  T
Q  176 cagtagataagggcaaataag 196  Q
    |||||||| ||  ||||||||    
T  21157887 cagtagatgagctcaaataag 21157907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 112
Target Start/End: Complemental strand, 29467667 - 29467639
Alignment:
Q  84 gagagtttatggaaataagctgaaaacag 112  Q
    |||||||||||||||||||||||||||||    
T  29467667 gagagtttatggaaataagctgaaaacag 29467639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 76 - 195
Target Start/End: Complemental strand, 37611266 - 37611147
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgc 175  Q
    ||||||||||||| |||||||||||| ||||||||||  |||||| |||| | ||||||||||| |||||||| ||||||| || ||||  | ||| |||    
T  37611266 ctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataagctctctcaaacaatctcacaagtacttgtgc 37611167  T
Q  176 cagtagataagggcaaataa 195  Q
    |||||||||||  |||||||    
T  37611166 cagtagataagttcaaataa 37611147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 76 - 195
Target Start/End: Complemental strand, 37787996 - 37787877
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgc 175  Q
    ||||||||||||| |||||||||||| ||||||||||  |||||| |||| | ||||||||||| |||||||| ||||||| || ||||  | ||| |||    
T  37787996 ctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataagctctctcaaacaatctcacaagtacttgtgc 37787897  T
Q  176 cagtagataagggcaaataa 195  Q
    |||||||||||  |||||||    
T  37787896 cagtagataagttcaaataa 37787877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 76 - 206
Target Start/End: Original strand, 17368695 - 17368821
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgc 175  Q
    ||||||||||||| ||||||||||||||||||||| |  |||||| |||| ||||||||||||| |||| ||| |    | ||  ||||  |||||||||    
T  17368695 ctatcttggagaggttatggaaataagctgaaaactgcatatgaacatgtcataagttgttttcataagttctct----cggtgtcacaagtgcttatgc 17368790  T
Q  176 cagtagataagggcaaataagtcaatccaaa 206  Q
    |||||||||||   |||||||||||||||||    
T  17368791 cagtagataagtttaaataagtcaatccaaa 17368821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 8089957 - 8090082
Alignment:
Q  78 atcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgcca 177  Q
    |||||| |||| ||||| |||||||||||||||||  || |||||| | ||||||||||||| |||||||| ||||| |||| | |   ||||| ||  |    
T  8089957 atcttgaagagcttatgaaaataagctgaaaacagcttaggaatatatcataagttgttttcataagctctctcaaatagtctcgcgagtgcttgtgtta 8090056  T
Q  178 gtagataagggcaaataagtcaatcc 203  Q
    |||||||||  |||||||||||||||    
T  8090057 gtagataagttcaaataagtcaatcc 8090082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 206
Target Start/End: Complemental strand, 499775 - 499652
Alignment:
Q  83 ggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtaga 182  Q
    |||||||||||||||||||||||||||||   | | || |||| ||||| ||||||| |||| |||  ||||||| |  |||  |||||||| ||||||     
T  499775 ggagagtttatggaaataagctgaaaacaacttgttaacatgtcataagctgttttcataagttctcccaaacagcctaacaggtgcttatgtcagtagg 499676  T
Q  183 taagggcaaataagtcaatccaaa 206  Q
    ||||  ||||||||||||||||||    
T  499675 taagctcaaataagtcaatccaaa 499652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 76 - 206
Target Start/End: Complemental strand, 12460052 - 12459922
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgc 175  Q
    |||||||| |||| ||||| ||||||||  ||||||   |||||| |||| ||||||||||||| || | |||  ||||||||| ||||  ||||||||     
T  12460052 ctatcttgcagagcttatgaaaataagccaaaaacaacatatgaacatgtcataagttgttttcataggttctcccaaacagtctcacaggtgcttatgt 12459953  T
Q  176 cagtagataagggcaaataagtcaatccaaa 206  Q
    ||| |||||||   |||||||||||||||||    
T  12459952 cagcagataagccgaaataagtcaatccaaa 12459922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 37526244 - 37526162
Alignment:
Q  82 tggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacaca 164  Q
    ||||||| |||||||||||||||||||||||  ||| || |||| ||| ||||| ||| |||||||| |||||||||| ||||    
T  37526244 tggagagcttatggaaataagctgaaaacagcttattaacatgtcataggttgtattcataagctctctcaaacagtctcaca 37526162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 37690681 - 37690599
Alignment:
Q  82 tggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacaca 164  Q
    ||||||| |||||||||||||||||||||||  ||| || |||| ||| ||||| ||| |||||||| |||||||||| ||||    
T  37690681 tggagagcttatggaaataagctgaaaacagcttattaacatgtcataggttgtattcataagctctctcaaacagtctcaca 37690599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 199
Target Start/End: Original strand, 1899179 - 1899295
Alignment:
Q  82 tggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtag 181  Q
    |||||| |||||||||||||||||||||||   |||| | |||| ||||| |||||| |||||||||   |||||||| |||| ||| |||||| ||||     
T  1899179 tggagaatttatggaaataagctgaaaacaacttatgcacatgtcataagctgtttt-gtaagctcttcaaaacagtctcacatatgtttatgctagtaa 1899277  T
Q  182 ataagggcaaataagtca 199  Q
    |||||  |||||||||||    
T  1899278 ataagctcaaataagtca 1899295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 65 - 185
Target Start/End: Complemental strand, 25720479 - 25720359
Alignment:
Q  65 gttttcatgctctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacaca 164  Q
    |||||||||  ||||||||||    ||||||||||||||| |||  ||| |||||| |||| || | |||||||  |||||||| ||| |||||| ||||    
T  25720479 gttttcatgagctatcttggaacacttatggaaataagctaaaagaagtttatgaacatgtcatgaattgtttttataagctctctcagacagtctcaca 25720380  T
Q  165 catgcttatgccagtagataa 185  Q
      |||||||||||||||||||    
T  25720379 agtgcttatgccagtagataa 25720359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 112
Target Start/End: Complemental strand, 28413334 - 28413299
Alignment:
Q  77 tatcttggagagtttatggaaataagctgaaaacag 112  Q
    ||||||||||||||||||||||||||||||||||||    
T  28413334 tatcttggagagtttatggaaataagctgaaaacag 28413299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 185
Target Start/End: Original strand, 7984988 - 7985097
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaa-tatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatg 174  Q
    |||||||||||| |||||| |||||||||||||||||  ||||||  | || | ||| ||||||| ||||||||  |||| |||| |||| | |||||||    
T  7984988 ctatcttggagaatttatgaaaataagctgaaaacagcttatgaacaacgtcacaagctgttttcttaagctctcccaaatagtctcaca-aagcttatg 7985086  T
Q  175 ccagtagataa 185  Q
    |||||||||||    
T  7985087 ccagtagataa 7985097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 206
Target Start/End: Original strand, 36318793 - 36318923
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgc 175  Q
    |||||||||||| |||||| |||||||||||||||||  ||  || ||||||||||||||||   | || | | || |||| || |||   |||||||||    
T  36318793 ctatcttggagaatttatgtaaataagctgaaaacagcttaacaagatgtaataagttgtttatttcagttttctctaacaatctcaccagtgcttatgc 36318892  T
Q  176 cagtagataagggcaaataagtcaatccaaa 206  Q
    |||||||||||   ||||||| |||||||||    
T  36318893 cagtagataagctaaaataagacaatccaaa 36318923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 37588405 - 37588323
Alignment:
Q  82 tggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacaca 164  Q
    ||||||| |||||||||||||||||||||||  ||| || || | ||| ||||| ||| |||||||| |||||||||| ||||    
T  37588405 tggagagcttatggaaataagctgaaaacagcttattaacatttcataggttgtattcataagctctctcaaacagtctcaca 37588323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 204
Target Start/End: Original strand, 38728435 - 38728549
Alignment:
Q  90 ttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggc 189  Q
    |||||||||||||||||||||||  || ||  |||| ||||| | ||||| ||||||||  |||||| |||||||  || |||| ||| ||||||||  |    
T  38728435 ttatggaaataagctgaaaacagcttaggagcatgtcataagctattttcataagctctcccaaacaatcacacaggtgtttataccaatagataagctc 38728534  T
Q  190 aaataagtcaatcca 204  Q
    ||||| |||||||||    
T  38728535 aaatatgtcaatcca 38728549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 31071259 - 31071306
Alignment:
Q  77 tatcttggagagtttatggaaataagctgaaaacagtctatgaatatg 124  Q
    ||||||||||| |||||| |||||||||||||||||  ||||||||||    
T  31071259 tatcttggagaatttatgcaaataagctgaaaacagcttatgaatatg 31071306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 158
Target Start/End: Original strand, 4619726 - 4619808
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagt 158  Q
    ||||| ||||||  ||||||||||||| ||||| |||  |||||| |||| || |||||||||| ||||||||  ||||||||    
T  4619726 ctatcatggagaacttatggaaataaggtgaaaccagcttatgaacatgtcattagttgttttcataagctctcccaaacagt 4619808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 195
Target Start/End: Original strand, 9106854 - 9106960
Alignment:
Q  90 ttatggaaataagctgaaaacagtctatg-aatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataaggg 188  Q
    |||||||||||||||||||||||  |||| ||||  | ||||||||||||| |||| |||  |||||| |  |||||||| ||| || ||||||||||      
T  9106854 ttatggaaataagctgaaaacagcttatgaaatacattataagttgttttcataagttcttccaaacaatgtcacacatgattacgcaagtagataagct 9106953  T
Q  189 caaataa 195  Q
    |||||||    
T  9106954 caaataa 9106960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 206
Target Start/End: Complemental strand, 28586809 - 28586687
Alignment:
Q  84 gagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagat 183  Q
    ||||| |||| ||||||||||||||||||  || | |||||| ||||| | ||| | ||||||||  ||||||||  |||| |||||||||| | ||||     
T  28586809 gagagcttatcgaaataagctgaaaacagcttacggatatgtcataagctatttccataagctctcccaaacagtttcacaaatgcttatgctattagac 28586710  T
Q  184 aagggcaaataagtcaatccaaa 206  Q
     ||  ||||| ||||||||||||    
T  28586709 tagttcaaattagtcaatccaaa 28586687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 186
Target Start/End: Original strand, 29588874 - 29589007
Alignment:
Q  52 taagctataaacagttttcatgctctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatc 151  Q
    |||||||||||  |||||| |   |||| ||| ||||||||||||||||||||||||| || ||||| |||| |  ||||||| ||||| ||| ||| |     
T  29588874 taagctataaagtgttttcgtaagctatgttgaagagtttatggaaataagctgaaaatagcctatggatatatcttaagttg-tttcgaaagatctctt 29588972  T
Q  152 aaacagtcacacacatgcttatgccagtagataag 186  Q
    |||||||| ||   |||||||||||| | ||||||    
T  29588973 aaacagtctcaataatgcttatgccactcgataag 29589007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 33533590 - 33533536
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataa 130  Q
    ||||||||||||| ||||||||||||| ||||||||   ||||||||||| ||||    
T  33533590 ctatcttggagagcttatggaaataagttgaaaacaacttatgaatatgtcataa 33533536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 111
Target Start/End: Complemental strand, 10272480 - 10272447
Alignment:
Q  78 atcttggagagtttatggaaataagctgaaaaca 111  Q
    ||||||||||||||||| ||||||||||||||||    
T  10272480 atcttggagagtttatgaaaataagctgaaaaca 10272447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 25461391 - 25461310
Alignment:
Q  52 taagctataaacagttttcatgctctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagtt 133  Q
    |||||||||||| ||||||||   ||||||||| |  |||||| |||||||||||||||||   ||||| |||| |||||||    
T  25461391 taagctataaactgttttcataacctatcttggcgtatttatgaaaataagctgaaaacagctaatgaacatgtcataagtt 25461310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 151
Target Start/End: Complemental strand, 37794735 - 37794674
Alignment:
Q  90 ttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatc 151  Q
    |||| |||||||||| |||||||  |||||| |||| ||||||||||||| |||||| ||||    
T  37794735 ttatcgaaataagctcaaaacagcttatgaacatgtcataagttgttttcataagctttatc 37794674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 10771865 - 10771809
Alignment:
Q  150 tcaaacagtcacacacatgcttatgccagtagataagggcaaataagtcaatccaaa 206  Q
    ||||||| || ||||  ||||||||||||||||||||  |||||||| |||||||||    
T  10771865 tcaaacaatctcacaagtgcttatgccagtagataagctcaaataagccaatccaaa 10771809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 22209782 - 22209746
Alignment:
Q  169 cttatgccagtagataagggcaaataagtcaatccaa 205  Q
    ||||||||||||||||||  |||||||||||||||||    
T  22209782 cttatgccagtagataagctcaaataagtcaatccaa 22209746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 206
Target Start/End: Original strand, 29336671 - 29336779
Alignment:
Q  98 ataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggcaaataagt 197  Q
    |||||||||||||| | ||||  ||||  ||||||||||| | |||||||| |||| ||||| ||||  ||||| ||||| |||||||   ||||| | |    
T  29336671 ataagctgaaaacattttatgggtatgccataagttgtttccataagctctctcaatcagtctcacaagtgcttttgccaatagataaactcaaatgatt 29336770  T
Q  198 caatccaaa 206  Q
    |||||||||    
T  29336771 caatccaaa 29336779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 30994161 - 30994129
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaa 108  Q
    |||||||||||||| ||||||||||||||||||    
T  30994161 ctatcttggagagtgtatggaaataagctgaaa 30994129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 35553263 - 35553207
Alignment:
Q  52 taagctataaacagttttcatgctctatcttggagagtttatggaaataagctgaaa 108  Q
    ||||||||||||  ||||||| | ||||  ||||||| |||||||||||||||||||    
T  35553263 taagctataaactattttcatacgctattctggagagcttatggaaataagctgaaa 35553207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 52 - 196
Target Start/End: Complemental strand, 31517815 - 31517671
Alignment:
Q  52 taagctataaacagttttcatgctctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatc 151  Q
    |||||||||| | || |||||  ||| |||||||||| ||||| |||||||||||||||||  |||||| |||| || |||||||||  |||| |||  |    
T  31517815 taagctataagctgtcttcataatctgtcttggagagcttatgaaaataagctgaaaacagcttatgaacatgtcatgagttgttttgataagttctccc 31517716  T
Q  152 aaacagtcacacacatgcttatgccagtagataagggcaaataag 196  Q
    |||||||| ||||  |||||||||||||| |||||  ||||||||    
T  31517715 aaacagtctcacaagtgcttatgccagtaaataagctcaaataag 31517671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 138
Target Start/End: Original strand, 17778955 - 17779038
Alignment:
Q  55 gctataaacagttttcatgctctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgtttt 138  Q
    ||||||| ||||||||||   |||||||||||| ||| |||||||||| |||||||||| |||||| | || ||||||||||||    
T  17778955 gctataagcagttttcataagctatcttggagaatttttggaaataaggtgaaaacagtttatgaacacgttataagttgtttt 17779038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 42757204 - 42757146
Alignment:
Q  100 aagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagt 158  Q
    |||||||||||||  |||||||||||||||||||||||||||||| |||  ||||||||    
T  42757204 aagctgaaaacagcttatgaatatgtaataagttgttttcgtaagttcttccaaacagt 42757146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 90 - 198
Target Start/End: Complemental strand, 5592003 - 5591896
Alignment:
Q  90 ttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggc 189  Q
    ||||||||||||  ||||||| |  |||| |  ||| ||||| ||||||| |||||||| ||||||||||  |||||||||||| ||||||||||||  |    
T  5592003 ttatggaaataaattgaaaacggcttatgcacgtgtcataagctgttttcataagctctctcaaacagtct-acacatgcttataccagtagataagctc 5591905  T
Q  190 aaataagtc 198  Q
    |||||||||    
T  5591904 aaataagtc 5591896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 35925709 - 35925777
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaag 144  Q
    ||||| ||||||||||||||||||||| |||||||||  |||||| |||| ||||| ||||||| ||||    
T  35925709 ctatcatggagagtttatggaaataagttgaaaacagcttatgaacatgtcataagctgttttcataag 35925777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 4481969 - 4482031
Alignment:
Q  96 aaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagt 158  Q
    ||||||||| |||||||  |||||| |||||||||||||||||| |||| ||| |||||||||    
T  4481969 aaataagctaaaaacagcttatgaacatgtaataagttgttttcataagttctctcaaacagt 4482031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 206
Target Start/End: Original strand, 6292512 - 6292641
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgc 175  Q
    |||| |||||||| ||||| |||||||||||||||||  |||||| |||| ||||| ||||||   ||  |||  |||||| || || |  ||||||||     
T  6292512 ctattttggagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagctgtttt-aaaaattctcccaaacaatctcaaaagtgcttatgt 6292610  T
Q  176 cagtagataagggcaaataagtcaatccaaa 206  Q
    |||||||||||  ||||||||||||||||||    
T  6292611 cagtagataagctcaaataagtcaatccaaa 6292641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 207
Target Start/End: Complemental strand, 4549546 - 4549461
Alignment:
Q  122 atgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggcaaataagtcaatccaaaa 207  Q
    |||| |||||||||||   ||||||||  ||||||||| || | ||||||||||||||||||||   |||||||| ||||||||||    
T  4549546 atgtcataagttgtttctataagctctcccaaacagtctcagaaatgcttatgccagtagataatctcaaataagccaatccaaaa 4549461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 185
Target Start/End: Complemental strand, 4768879 - 4768771
Alignment:
Q  77 tatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgcc 176  Q
    ||||||||||| |||||||||||||||||||||||   |||| | ||||  |||| |||||||||||| | |  ||||| ||| ||||  || |||||||    
T  4768879 tatcttggagaatttatggaaataagctgaaaacaagttatggacatgtcgtaagctgttttcgtaagttttcccaaactgtctcacaagtgtttatgcc 4768780  T
Q  177 agtagataa 185  Q
    ||| |||||    
T  4768779 agttgataa 4768771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 10439705 - 10439777
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctct 148  Q
    ||||| ||||||||||||||||||||||||||| |||  |||| | |||| |||  |||||||| ||||||||    
T  10439705 ctatcctggagagtttatggaaataagctgaaagcagattatggacatgtcatagtttgttttcataagctct 10439777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 17420238 - 17420294
Alignment:
Q  92 atggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctct 148  Q
    ||||||||||| |||||||| | |||| | |||||||||||||||||| ||||||||    
T  17420238 atggaaataagttgaaaacaatttatggacatgtaataagttgttttcataagctct 17420294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 192
Target Start/End: Complemental strand, 35058483 - 35058367
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgc 175  Q
    ||||||||||||  ||| | || ||||||||||||||  || ||| |||||||||||| |||| ||||| |||  |||||||||| |||  || ||||||    
T  35058483 ctatcttggagaacttacgaaagtaagctgaaaacagcttacgaacatgtaataagttattttagtaagttctcccaaacagtcagacaagtggttatgc 35058384  T
Q  176 cagtagataagggcaaa 192  Q
     |||||| ||| |||||    
T  35058383 aagtagacaagcgcaaa 35058367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 200
Target Start/End: Complemental strand, 37593735 - 37593611
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgc 175  Q
    |||| ||| |||| ||||| |||||||||||||||||  |||||| |||| ||||||||| ||| | || | |  |||||||||  |||  || ||||||    
T  37593735 ctattttgaagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagttgtgttcattagttttcccaaacagtctaacaagtgtttatgc 37593636  T
Q  176 cagtagataagggcaaataagtcaa 200  Q
    ||||| |||||  ||||||||||||    
T  37593635 cagtatataagctcaaataagtcaa 37593611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 37811877 - 37811953
Alignment:
Q  82 tggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagt 158  Q
    ||||||| | ||||||||||| |||||||||| |||||| |||| ||||| ||||||| |||| ||| |||| ||||    
T  37811877 tggagagctaatggaaataagttgaaaacagtttatgaacatgtcataagctgttttcataagttctctcaaccagt 37811953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 111
Target Start/End: Complemental strand, 14630017 - 14629982
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaaca 111  Q
    |||||||||||| |||||||||||||||||||||||    
T  14630017 ctatcttggagactttatggaaataagctgaaaaca 14629982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 201
Target Start/End: Original strand, 27807144 - 27807259
Alignment:
Q  86 gagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataa 185  Q
    ||||||||| ||  |||||||| ||||  |||||| | || || || || |||| |||||||| ||||||||||  ||| ||||||||| ||||||| ||    
T  27807144 gagtttatgtaagaaagctgaagacagcttatgaacacgtcatcagctgctttcataagctctctcaaacagtcttacaaatgcttatgtcagtagaaaa 27807243  T
Q  186 gggcaaataagtcaat 201  Q
    |  |||||||||||||    
T  27807244 gttcaaataagtcaat 27807259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 43371891 - 43371836
Alignment:
Q  127 ataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtaga 182  Q
    ||||| ||||||| |||||||| |||||||||| ||||  ||||||||||||||||    
T  43371891 ataagctgttttcataagctctctcaaacagtctcacaagtgcttatgccagtaga 43371836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 199
Target Start/End: Complemental strand, 28482283 - 28482161
Alignment:
Q  77 tatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgcc 176  Q
    |||||||||||| ||| | ||||||||| |||| ||| ||||||||| | ||||| |||||   | ||||||||| |||| || ||||  | | |||| |    
T  28482283 tatcttggagagcttacgaaaataagctaaaaatagtttatgaatatatcataagatgtttctatgagctctatcgaacaatctcacaagttcgtatgtc 28482184  T
Q  177 agtagataagggcaaataagtca 199  Q
    ||||||||||  |||||||||||    
T  28482183 agtagataagttcaaataagtca 28482161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 215
Target Start/End: Complemental strand, 41638302 - 41638220
Alignment:
Q  133 tgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggcaaataagtcaatccaaaaaagccatt 215  Q
    ||||||| ||| ||||  ||||||||| |||| ||||||||||||||||||| |  ||| |||| ||||||||| | ||||||    
T  41638302 tgttttcataatctctcccaaacagtctcacaaatgcttatgccagtagataggctcaattaagacaatccaaacatgccatt 41638220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 45975709 - 45975755
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaata 122  Q
    |||||||||||| |||||| |||||||||||||||||  ||||||||    
T  45975709 ctatcttggagaatttatgaaaataagctgaaaacagcttatgaata 45975755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 46504214 - 46504144
Alignment:
Q  131 gttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggcaaataagtcaat 201  Q
    ||||||||| ||||||||| | ||||||| |||| || |||||||| ||||||||   |||||||||||||    
T  46504214 gttgttttcataagctctaccgaacagtctcacaaatacttatgccggtagataaactcaaataagtcaat 46504144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 4699659 - 4699598
Alignment:
Q  83 ggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaag 144  Q
    |||||| |||| |||||||||| |||||||  |||||| |||| ||||||||||||| ||||    
T  4699659 ggagagcttatagaaataagctaaaaacagcttatgaacatgtcataagttgttttcataag 4699598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 5047165 - 5047214
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgt 125  Q
    ||||| || |||| |||||||||||||||||||||||  |||||||||||    
T  5047165 ctatcatgaagagcttatggaaataagctgaaaacagcgtatgaatatgt 5047214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 7357491 - 7357536
Alignment:
Q  93 tggaaataagctgaaaacagtctatgaatatgtaataagttgtttt 138  Q
    |||| |||||||||||| |||||||||| ||||| |||||||||||    
T  7357491 tggatataagctgaaaatagtctatgaacatgtagtaagttgtttt 7357536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 113
Target Start/End: Original strand, 7472330 - 7472367
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagt 113  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  7472330 ctatcttggagagcttatgaaaataagctgaaaacagt 7472367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 205
Target Start/End: Complemental strand, 10199451 - 10199330
Alignment:
Q  84 gagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagat 183  Q
    ||||| ||||| ||||||||||||||||   |||||| |||| ||||| | ||||| | || |||  |||| |||  ||||  ||||||||  |||||||    
T  10199451 gagagcttatgaaaataagctgaaaacaacttatgaacatgtcataagctattttcatgagttctcccaaatagtgtcacaagtgcttatgttagtagat 10199352  T
Q  184 aagggcaaataagtcaatccaa 205  Q
    |||  |||||||||||||||||    
T  10199351 aagctcaaataagtcaatccaa 10199330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 201
Target Start/End: Complemental strand, 38170717 - 38170616
Alignment:
Q  100 aagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggcaaataagtca 199  Q
    ||||||||||||   |||||| |||| ||||| ||||||| ||||||||  ||| ||||| ||||  || | ||||||||| ||||||  ||||||||||    
T  38170717 aagctgaaaacaacttatgaacatgtcataagctgttttcataagctctcccaagcagtctcacaagtgttcatgccagtatataaggttaaataagtca 38170618  T
Q  200 at 201  Q
    ||    
T  38170617 at 38170616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 174
Target Start/End: Original strand, 43333705 - 43333798
Alignment:
Q  81 ttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatg 174  Q
    |||||||| ||||||||||||| |||||| | | |||| | ||| | |||||||||| | |||| ||| |  |||||||||||| |||||||||    
T  43333705 ttggagagcttatggaaataagatgaaaataatttatggacatgaattaagttgtttccataagttcttttcaacagtcacacaaatgcttatg 43333798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 206
Target Start/End: Complemental strand, 51929468 - 51929383
Alignment:
Q  121 tatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggcaaataagtcaatccaaa 206  Q
    ||||| ||||| ||||||| |||| ||| | |||||||  ||||  |||||||| |||||||||||  |||| |||||||||||||    
T  51929468 tatgtcataagctgttttcataagttctcttaaacagtgtcacaggtgcttatgtcagtagataagctcaaaaaagtcaatccaaa 51929383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 202
Target Start/End: Original strand, 1662598 - 1662718
Alignment:
Q  82 tggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtag 181  Q
    ||||||| ||||| |||||| || |||| | | |||| | |||| ||||||||||| ||||||||||  |||| |||| | ||  | ||||||| |||||    
T  1662598 tggagagcttatgaaaataaactaaaaatattttatggacatgtcataagttgtttccgtaagctctcgcaaatagtctcgcatgtacttatgctagtag 1662697  T
Q  182 ataagggcaaataagtcaatc 202  Q
    |||||  |||||||| |||||    
T  1662698 ataagctcaaataagccaatc 1662718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 206
Target Start/End: Complemental strand, 4034053 - 4033938
Alignment:
Q  90 ttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggc 189  Q
    ||||||||||||| |||| ||||  |||| | | || ||||||| ||||| |||||||| ||||||| || ||||  || ||||||||||||| |||  |    
T  4034053 ttatggaaataagttgaagacaga-tatggacaagtcataagttattttcataagctctctcaaacaatctcacaagtgtttatgccagtagacaagttc 4033955  T
Q  190 aaataagtcaatccaaa 206  Q
    |||| ||||||| ||||    
T  4033954 aaatgagtcaatgcaaa 4033938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 6102173 - 6102217
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaa 120  Q
    |||||| ||||| ||||||||||||||||||||||| | ||||||    
T  6102173 ctatctgggagaatttatggaaataagctgaaaacaatttatgaa 6102217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 202
Target Start/End: Original strand, 10280682 - 10280794
Alignment:
Q  90 ttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggc 189  Q
    ||||| ||||||||||| || ||  |||||| ||| |||||||||||||| |||| |||    ||||||  ||||  ||||||||||| |||||| |  |    
T  10280682 ttatgaaaataagctgacaaaagcttatgaacatgaaataagttgttttcataagttctcctgaacagtgtcacaattgcttatgccaatagataggttc 10280781  T
Q  190 aaataagtcaatc 202  Q
    |||||||||||||    
T  10280782 aaataagtcaatc 10280794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 24460378 - 24460322
Alignment:
Q  150 tcaaacagtcacacacatgcttatgccagtagataagggcaaataagtcaatccaaa 206  Q
    |||||||||| ||||  |||| ||| |||||||||||  ||||||||||||||||||    
T  24460378 tcaaacagtctcacaagtgctcatgtcagtagataagttcaaataagtcaatccaaa 24460322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 34179948 - 34179888
Alignment:
Q  51 ctaagctataaacagttttcatgctctatcttggagagtttatggaaataagctgaaaaca 111  Q
    ||||||||||||| ||||||||   ||||| || | |||||||||||||| ||||||||||    
T  34179948 ctaagctataaactgttttcataaactatcctgaaaagtttatggaaatacgctgaaaaca 34179888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 206
Target Start/End: Original strand, 21574515 - 21574641
Alignment:
Q  82 tggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacaca--tgcttatgccagt 179  Q
    ||||||| ||||||||||||||| ||| |||  |||||| |||| ||||||||||||| ||||||||  ||||||||| || |||  || || |||||||    
T  21574515 tggagagcttatggaaataagctaaaagcagcttatgaacatgtcataagttgttttcataagctctcccaaacagtctcaaacaattgattttgccagt 21574614  T
Q  180 agataagggcaaataagtcaatccaaa 206  Q
    |||||||  ||||||||||| ||||||    
T  21574615 agataagttcaaataagtcattccaaa 21574641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 14548766 - 14548684
Alignment:
Q  82 tggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacaca 164  Q
    ||||||| ||||||||||||||||||||||| |||| || |||| ||| ||||||||| |||||||| |||||||||| ||||    
T  14548766 tggagagcttatggaaataagctgaaaacagcctattaaaatgtcatacgttgttttcataagctctctcaaacagtctcaca 14548684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 164
Target Start/End: Original strand, 50952352 - 50952440
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacaca 164  Q
    ||||||||||||| ||||||||||||||| |||||||| |||||| |||| ||||| |||||||||| | ||| || ||||||| ||||    
T  50952352 ctatcttggagagcttatggaaataagcttaaaacagtttatgaacatgtcataagctgttttcgtacgttctctcgaacagtctcaca 50952440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 76 - 202
Target Start/End: Original strand, 24281066 - 24281192
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgc 175  Q
    ||||| ||||||| ||||| || |||| ||||||||   |||| | || | ||||||||||||| |||||||| ||||||| |||||||  ||||||| |    
T  24281066 ctatcatggagagcttatgaaagtaagttgaaaacaacttatggagatatcataagttgttttcataagctctctcaaacaatcacacaagtgcttatac 24281165  T
Q  176 cagtagataagggcaaataagtcaatc 202  Q
    |||||||||    ||||||||||||||    
T  24281166 cagtagatagactcaaataagtcaatc 24281192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 206
Target Start/End: Complemental strand, 20195065 - 20194954
Alignment:
Q  95 gaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggcaaata 194  Q
    |||| ||||||||||||   | ||||||||| ||||  ||||||| ||||||||  ||||||||| ||||  ||||||||| || |||||||  ||||||    
T  20195065 gaaaaaagctgaaaacaacttttgaatatgtcataaactgttttcataagctctcacaaacagtctcacaactgcttatgcaagaagataagttcaaata 20194966  T
Q  195 agtcaatccaaa 206  Q
    | ||||||||||    
T  20194965 aatcaatccaaa 20194954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 206
Target Start/End: Original strand, 11253528 - 11253650
Alignment:
Q  84 gagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagat 183  Q
    ||||| ||| ||||||| |||||||||||| |||  |||||| ||||||||||||  |||  |||  ||||||||| | ||  ||||||||| |||||||    
T  11253528 gagagcttagggaaataggctgaaaacagtttatagatatgtcataagttgtttttataaattctgccaaacagtctctcaagtgcttatgctagtagat 11253627  T
Q  184 aagggcaaataagtcaatccaaa 206  Q
    ||   ||||||||||||| ||||    
T  11253628 aatctcaaataagtcaattcaaa 11253650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 196
Target Start/End: Original strand, 37273135 - 37273273
Alignment:
Q  58 ataaacagttttcatgctctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacag 157  Q
    |||||| ||||||||   ||||||||||||  ||||||||||||| ||||||||   |||| | |||| ||||||||||| | ||||||||  |||||||    
T  37273135 ataaactgttttcataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacag 37273234  T
Q  158 tcacacacatgcttatgccagtagataagggcaaataag 196  Q
    || |||   ||||||||| | || |||||  ||||||||    
T  37273235 tctcaccagtgcttatgctaataaataagttcaaataag 37273273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 137
Target Start/End: Original strand, 2201123 - 2201208
Alignment:
Q  52 taagctataaacagttttcatgctctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttt 137  Q
    |||||||||| | ||||||||   |||||||||| |||||| ||||| |||||||||| ||| |||||| || | |||||||||||    
T  2201123 taagctataagctgttttcattagctatcttggatagtttaaggaaaaaagctgaaaagagtttatgaacatatcataagttgttt 2201208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 185
Target Start/End: Original strand, 38318991 - 38319088
Alignment:
Q  88 gtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataa 185  Q
    |||||||||||||||||||||| ||  |||||| |||| ||||||||||||| | |||| |  | |||| |||||||  ||| ||||| |||||||||    
T  38318991 gtttatggaaataagctgaaaatagcttatgaacatgttataagttgttttcattagctatgcccaacaatcacacaattgcgtatgctagtagataa 38319088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 204
Target Start/End: Original strand, 24624250 - 24624357
Alignment:
Q  97 aataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggcaaataag 196  Q
    ||||||||||||||||| |||| | |||| ||||| ||||||| ||||||||  |||||||||  |||  |||| |||  ||||||||||  ||| ||||    
T  24624250 aataagctgaaaacagtttatggacatgtcataagctgttttcataagctcttccaaacagtcttacaagtgctaatgtgagtagataagttcaactaag 24624349  T
Q  197 tcaatcca 204  Q
     |||||||    
T  24624350 ccaatcca 24624357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 164
Target Start/End: Complemental strand, 25183061 - 25182950
Alignment:
Q  54 agctataaacagttttcatgctctatcttggagagtttatggaaataagctgaaaac-agtctatgaatatgtaataagttgttttcgtaagctctatca 152  Q
    |||||||| | ||||||||   ||||| |||| | ||| |||||||| ||||||||  ||  |||| |||||| ||||||||||||| |||||||| |||    
T  25183061 agctataagctgttttcataagctatcatggaaaatttgtggaaatatgctgaaaaatagcttatggatatgtcataagttgttttcataagctctctca 25182962  T
Q  153 aacagtcacaca 164  Q
    ||||||| ||||    
T  25182961 aacagtctcaca 25182950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 185
Target Start/End: Complemental strand, 26330360 - 26330265
Alignment:
Q  90 ttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataa 185  Q
    |||||||||||| ||||||| |  ||||||| |||| | ||||||||||| ||||||||   |||||||| |||| || |||||  ||||||||||    
T  26330360 ttatggaaataacctgaaaagaacctatgaacatgtcagaagttgttttcataagctcttctaaacagtctcacaaatacttatttcagtagataa 26330265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 159
Target Start/End: Original strand, 47132033 - 47132096
Alignment:
Q  96 aaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtc 159  Q
    |||||||||||||||||| |||| |||||  ||||||||||||| |||| ||| ||||| ||||    
T  47132033 aaataagctgaaaacagtttatggatatgacataagttgttttcataagttctctcaaatagtc 47132096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 147
Target Start/End: Complemental strand, 48049033 - 48048962
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctc 147  Q
    ||||||||| ||| |||||||||||||||||||||||  |||| | |||| || ||||| |||| |||||||    
T  48049033 ctatcttggggaggttatggaaataagctgaaaacagcttatggacatgtcatgagttggtttcataagctc 48048962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 206
Target Start/End: Complemental strand, 30573965 - 30573836
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgc 175  Q
    ||||||||||||| | ||| | |||||||||||||||  |||||| |||  |||| |||||||| |||| |||  ||||||  | ||||  ||||||||     
T  30573965 ctatcttggagagctgatgaacataagctgaaaacagcttatgaacatgccataatttgttttcataagttctcacaaacaaactcacaagtgcttatgt 30573866  T
Q  176 cagtagataagggcaaataagtcaatccaaa 206  Q
    |||||||| ||  |||||||||| |||||||    
T  30573865 cagtagat-agctcaaataagtccatccaaa 30573836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 482843 - 482810
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaa 109  Q
    |||||||| |||||||||||||||||||||||||    
T  482843 ctatcttgaagagtttatggaaataagctgaaaa 482810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 1816608 - 1816665
Alignment:
Q  82 tggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttc 139  Q
    ||||||| ||||  ||||||||||||||||| ||||||| |||| ||||||| |||||    
T  1816608 tggagagcttatcaaaataagctgaaaacagcctatgaaaatgtcataagttattttc 1816665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 137
Target Start/End: Original strand, 43115051 - 43115136
Alignment:
Q  52 taagctataaacagttttcatgctctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttt 137  Q
    ||||||||||   |||||||||  ||||| | ||||| ||||||||||||||||||||||   |||| | |||| |||||||||||    
T  43115051 taagctataagttgttttcatgaactatcattgagagcttatggaaataagctgaaaacaagttatggacatgtcataagttgttt 43115136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 51929315 - 51929278
Alignment:
Q  169 cttatgccagtagataagggcaaataagtcaatccaaa 206  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  51929315 cttatgccagtaaataaggtcaaataagtcaatccaaa 51929278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 3775856 - 3775772
Alignment:
Q  122 atgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggcaaataagtcaatccaaa 206  Q
    ||||||||||||||||   ||||||||  |||||||||  |||  || ||||||||||||||||   |||||||| |||||||||    
T  3775856 atgtaataagttgtttctataagctctgccaaacagtctaacaattgtttatgccagtagataaactcaaataaggcaatccaaa 3775772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 23808115 - 23808047
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaag 144  Q
    ||||||||||||||||||| ||||||| |||||||| | | |||| |||| ||||| || |||| ||||    
T  23808115 ctatcttggagagtttatgaaaataagatgaaaacaatttgtgaacatgtcataagctgctttcataag 23808047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 27290952 - 27290880
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctct 148  Q
    ||||| || |||||| |||||||||||||||||||||  ||||   |||| ||||| ||||||| ||||||||    
T  27290952 ctatcctgcagagttcatggaaataagctgaaaacagcttatgggcatgtcataagctgttttcataagctct 27290880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 40880953 - 40880869
Alignment:
Q  122 atgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggcaaataagtcaatccaaa 206  Q
    |||| ||||||||||||| |||||||| |||||||||| |||  ||| | ||  || ||||||||   |||||||||||||||||    
T  40880953 atgtcataagttgttttcataagctctctcaaacagtctcacgtatgttcatttcaatagataagcttaaataagtcaatccaaa 40880869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 159
Target Start/End: Original strand, 46031009 - 46031093
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaat-atgtaataagttgttttcgtaagctctatcaaacagtc 159  Q
    ||||||||||||  ||||  |||||||||||||||||  ||||||| |||| ||| | |||||||||||| ||| | ||||||||    
T  46031009 ctatcttggagaacttattaaaataagctgaaaacagcttatgaataatgtcataggctgttttcgtaagttctctgaaacagtc 46031093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 50211792 - 50211884
Alignment:
Q  114 ctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggcaaataagtcaatccaaa 206  Q
    ||||| || ||| ||||||||||||| |||| ||| ||||||||||  |||  ||||||||  ||||||||||   |||||||| ||||||||    
T  50211792 ctatggatgtgttataagttgttttcataagttctctcaaacagtcttacaagtgcttatgttagtagataagctaaaataagttaatccaaa 50211884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 82 - 212
Target Start/End: Complemental strand, 22387941 - 22387811
Alignment:
Q  82 tggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtag 181  Q
    ||||||| ||||||||||||| | |||||||| ||| || |||  ||||||||||||| ||||||||  ||||||||| ||||| || ||||| |||||     
T  22387941 tggagagcttatggaaataagttaaaaacagtttataaacatgccataagttgttttcataagctctcccaaacagtctcacacgtgtttatgtcagtaa 22387842  T
Q  182 ataagggcaaataagtcaatccaaaaaagcc 212  Q
    |||||  | | |||||||||||||| |||||    
T  22387841 ataagttctagtaagtcaatccaaacaagcc 22387811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 206
Target Start/End: Complemental strand, 12234932 - 12234810
Alignment:
Q  84 gagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagat 183  Q
    ||||| |||||||||||||||||||||||  |||  | |||| |||||||||||   |||||| |  ||| ||||| ||||| |||| ||||||||||||    
T  12234932 gagagcttatggaaataagctgaaaacagcttatagacatgtcataagttgtttctataagctattccaagcagtctcacacgtgctaatgccagtagat 12234833  T
Q  184 aagggcaaataagtcaatccaaa 206  Q
    |||  ||| ||||||||||||||    
T  12234832 aagctcaactaagtcaatccaaa 12234810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 201
Target Start/End: Complemental strand, 25670636 - 25670512
Alignment:
Q  77 tatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgcc 176  Q
    |||||||||||| || || |||||||||||||||| | ||| || |||| ||||||||||||| |||| | | |||||||||| ||||   ||||||| |    
T  25670636 tatcttggagagcttgtgaaaataagctgaaaacaatttattaacatgtcataagttgttttcataagttttctcaaacagtctcacaagagcttatgtc 25670537  T
Q  177 agtagataagggcaaataagtcaat 201  Q
    | ||||||||  ||| |||||||||    
T  25670536 aatagataagctcaagtaagtcaat 25670512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 196
Target Start/End: Complemental strand, 36598388 - 36598287
Alignment:
Q  95 gaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggcaaata 194  Q
    ||||||||||||||||||  |||||| |||| ||||| ||||| | |||||||| ||||||| || ||||  |||||||| |||||| ||||  ||||||    
T  36598388 gaaataagctgaaaacagcttatgaacatgtcataagatgtttccataagctctctcaaacaatctcacaattgcttatgtcagtagttaagttcaaata 36598289  T
Q  195 ag 196  Q
    ||    
T  36598288 ag 36598287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 23214920 - 23215004
Alignment:
Q  122 atgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggcaaataagtcaatccaaa 206  Q
    |||| ||||||||||||| |||  ||| |||||||||| || |  || |||||| ||||||||||| ||||||||||||||||||    
T  23214920 atgtcataagttgttttcataaattctctcaaacagtctcataagtgtttatgctagtagataaggtcaaataagtcaatccaaa 23215004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 206
Target Start/End: Original strand, 33894646 - 33894776
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgc 175  Q
    ||||| |||| ||||||| |||||||||||||||||   |||| | |||| ||| | ||||||| ||||||||  ||||||||| ||||  ||||||||     
T  33894646 ctatcctggaaagtttattgaaataagctgaaaacaacttatggacatgtcatatgctgttttcataagctctcacaaacagtctcacaagtgcttatgt 33894745  T
Q  176 cagtagataagggcaaataagtcaatccaaa 206  Q
    || | ||||||  ||||||||  ||||||||    
T  33894746 catttgataagctcaaataagctaatccaaa 33894776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 196
Target Start/End: Original strand, 44808191 - 44808297
Alignment:
Q  90 ttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggc 189  Q
    ||||| |||||||||||||||||  |||| | |||| ||||||| ||||| |||| ||||||||||||||  |||  ||||||||| | || |||||  |    
T  44808191 ttatgaaaataagctgaaaacaggttatggacatgtcataagttattttcataaggtctatcaaacagtctgacaactgcttatgctaataaataagctc 44808290  T
Q  190 aaataag 196  Q
    |||||||    
T  44808291 aaataag 44808297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 6552365 - 6552288
Alignment:
Q  54 agctataaacagttttcatgctctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataag 131  Q
    ||||||||||  |||||||   ||||| || |||||||||| |||||||||||||||||  ||||||||||| |||||    
T  6552365 agctataaactattttcataaactatcatgcagagtttatgaaaataagctgaaaacagcttatgaatatgtcataag 6552288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 212
Target Start/End: Complemental strand, 48157157 - 48157033
Alignment:
Q  90 ttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggc 189  Q
    |||||||||||||||||||||||  |||| | |||  |||||||||||   ||||||||  ||||||||| |||| |||||||   ||||| |||||  |    
T  48157157 ttatggaaataagctgaaaacagcttatggacatggcataagttgtttctataagctctcccaaacagtctcacaaatgcttaaatcagtaaataagctc 48157058  T
Q  190 aaataagtc--aatccaaaaaagcc 212  Q
    |||||||||  |||||||| |||||    
T  48157057 aaataagtcttaatccaaacaagcc 48157033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 2767228 - 2767168
Alignment:
Q  77 tatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttt 137  Q
    |||||||| || |||||||||||||| ||||||||||  ||| | ||||||||||||||||    
T  2767228 tatcttggtgaatttatggaaataagttgaaaacagttgatggacatgtaataagttgttt 2767168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 22551454 - 22551370
Alignment:
Q  78 atcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcaca 162  Q
    ||||||||||| ||||| ||||||||||||||||   | |||| |||| ||||| |||||||  || |||| |||||||||||||    
T  22551454 atcttggagagcttatgtaaataagctgaaaacaacatttgaacatgtcataagctgttttcaaaatctctctcaaacagtcaca 22551370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 45859577 - 45859490
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacaca 164  Q
    ||||| || |||| |||| |||||||||||||||||  ||||||| |||| ||| ||||||| ||||||||||  ||||||||| ||||    
T  45859577 ctatcatgaagagcttatagaaataagctgaaaaca-actatgaacatgtcatatgttgtttccgtaagctcttccaaacagtctcaca 45859490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 206
Target Start/End: Original strand, 1418529 - 1418568
Alignment:
Q  167 tgcttatgccagtagataagggcaaataagtcaatccaaa 206  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  1418529 tgcttatgccagtagataagctcaaataagtcaatccaaa 1418568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 159
Target Start/End: Original strand, 39360042 - 39360125
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtc 159  Q
    ||||| ||| ||| |||| |||||||||||||| ||   |||| |||||| ||||||||||| | ||| |||||||||||||||    
T  39360042 ctatcctggcgagcttattgaaataagctgaaagcaacttatggatatgtcataagttgtttccataaactctatcaaacagtc 39360125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 174
Target Start/End: Original strand, 48131571 - 48131670
Alignment:
Q  75 tctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatg 174  Q
    |||||| ||||||| |||||   |||||||||||| ||| |||||| |||| |||| || |||||||||| |||  ||||||||| || | |||||||||    
T  48131571 tctatcctggagagcttatgagtataagctgaaaatagtttatgaaaatgtcataacttattttcgtaagttcttccaaacagtctcataaatgcttatg 48131670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 205
Target Start/End: Complemental strand, 425855 - 425745
Alignment:
Q  96 aaataagctgaaaacagtctatgaatatgtaataagttgtttt-cgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggcaaata 194  Q
    |||||||||| ||| ||  |||||| |||| ||||| |||||| |||||| |||  ||||||||  ||||  |||||||||||||||||||   ||||||    
T  425855 aaataagctggaaatagcttatgaacatgtcataagctgtttttcgtaagttctcccaaacagtgccacatgtgcttatgccagtagataatctcaaata 425756  T
Q  195 agtcaatccaa 205  Q
    || ||||||||    
T  425755 agccaatccaa 425745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 206
Target Start/End: Complemental strand, 12792549 - 12792419
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgc 175  Q
    |||||||| |||| |||| |||||||||||| |||||| |||||  || | ||||| | ||||| |||||||||| ||| |||| | ||  || |||||     
T  12792549 ctatcttgaagagcttattgaaataagctgataacagtttatgagcatattataagctattttcttaagctctattaaatagtctctcaagtgtttatgt 12792450  T
Q  176 cagtagataagggcaaataagtcaatccaaa 206  Q
     ||||||||||   |||||||||||| ||||    
T  12792449 aagtagataagttgaaataagtcaattcaaa 12792419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 19719047 - 19719093
Alignment:
Q  98 ataagctgaaaacagtctatgaatatgtaataagttgttttcgtaag 144  Q
    |||||||||||||||| |||||| |||| ||||||||||||| ||||    
T  19719047 ataagctgaaaacagtttatgaacatgtcataagttgttttcataag 19719093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 35267382 - 35267436
Alignment:
Q  77 tatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataag 131  Q
    |||||||||||| |||| |||||||||||||||||  ||||||| |||| |||||    
T  35267382 tatcttggagagcttatagaaataagctgaaaacaacctatgaacatgtcataag 35267436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 145
Target Start/End: Original strand, 12110355 - 12110448
Alignment:
Q  52 taagctataaacagttttcatgctctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagc 145  Q
    |||||||||| | ||||||||   |||||||| |||  ||||| |||||| || |||||||| | |||| |||| ||||||||||||| |||||    
T  12110355 taagctataagctgttttcataagctatcttgaagaacttatgaaaataatctaaaaacagtttgtgaacatgtcataagttgttttcataagc 12110448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 44615147 - 44615083
Alignment:
Q  84 gagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctct 148  Q
    ||||||||||||||||||  |||||||||  | || | |||| ||||||||||||| ||||||||    
T  44615147 gagagtttatggaaataacgtgaaaacagcttgtggacatgtcataagttgttttcataagctct 44615083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 206
Target Start/End: Original strand, 46082061 - 46082185
Alignment:
Q  82 tggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtag 181  Q
    ||||||| ||||| ||||||||||||||||   ||||   |||| ||||||||||||| ||||||||    ||||||| || |  || ||||||||||||    
T  46082061 tggagagcttatgaaaataagctgaaaacaacttatggtcatgtcataagttgttttcataagctctcattaacagtctcaaaattgtttatgccagtag 46082160  T
Q  182 ataagggcaaataagtcaatccaaa 206  Q
     ||||  ||||| || |||||||||    
T  46082161 gtaagatcaaattagccaatccaaa 46082185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 76 - 202
Target Start/End: Original strand, 9478318 - 9478444
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgc 175  Q
    ||||| ||||||||| |||||| |||| |||||||||  |||| | |||||||||||||||| | ||| |||| |||||||||||||||  | ||||||     
T  9478318 ctatcgtggagagttgatggaagtaagatgaaaacagcttatggacatgtaataagttgtttgcataaactctctcaaacagtcacacaagtacttatgt 9478417  T
Q  176 cagtagataagggcaaataagtcaatc 202  Q
      |||||||||  ||||||||||||||    
T  9478418 tggtagataagttcaaataagtcaatc 9478444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 204
Target Start/End: Original strand, 39621988 - 39622098
Alignment:
Q  94 ggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggcaaat 193  Q
    |||||||||||||||||| | ||||||| ||| ||||||||||||| |||| ||| |||||||||  | ||  ||||||| | ||||||||||  |||||    
T  39621988 ggaaataagctgaaaacaatttatgaatttgtcataagttgttttcataagttctctcaaacagtgtcgcaagtgcttatacaagtagataagttcaaat 39622087  T
Q  194 aagtcaatcca 204  Q
    |||| ||||||    
T  39622088 aagtaaatcca 39622098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 35555147 - 35555228
Alignment:
Q  77 tatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagt 158  Q
    |||||| ||||||| |||||||||||||||||| ||| |||||  |||||||||  ||||||| |||||||| |||||||||    
T  35555147 tatctttgagagttgatggaaataagctgaaaatagtttatgatcatgtaataatctgttttcataagctctctcaaacagt 35555228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 206
Target Start/End: Complemental strand, 15370299 - 15370244
Alignment:
Q  151 caaacagtcacacacatgcttatgccagtagataagggcaaataagtcaatccaaa 206  Q
    ||||||||| |||| |||||||||||||||||||||  ||||||||||||||||||    
T  15370299 caaacagtctcacaaatgcttatgccagtagataagctcaaataagtcaatccaaa 15370244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 206
Target Start/End: Complemental strand, 43456743 - 43456628
Alignment:
Q  91 tatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggca 190  Q
    ||||||||||||||||||||||| |||| | |||| || ||||||||||  ||||||| ||||||||||  |||  || |||||  |||| |||||  ||    
T  43456743 tatggaaataagctgaaaacagtttatggacatgtcatgagttgttttcacaagctctttcaaacagtcttacaagtgtttatgtgagtaaataagttca 43456644  T
Q  191 aataagtcaatccaaa 206  Q
    ||||||| ||||||||    
T  43456643 aataagtaaatccaaa 43456628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 76 - 206
Target Start/End: Original strand, 15120202 - 15120332
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgc 175  Q
    ||||| ||||||| ||||  ||||||||| |||||||   ||||| |||| ||||||||||| | ||||||||  |||||||   ||||  || ||||||    
T  15120202 ctatcatggagagcttatcaaaataagcttaaaacagctaatgaacatgtcataagttgtttccataagctctcccaaacagattcacaactgtttatgc 15120301  T
Q  176 cagtagataagggcaaataagtcaatccaaa 206  Q
     ||||||||||  ||||||||||||||||||    
T  15120302 tagtagataagttcaaataagtcaatccaaa 15120332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 184
Target Start/End: Original strand, 787363 - 787459
Alignment:
Q  88 gtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagata 184  Q
    ||||||||| |||||||||||||||  |||| | |||| ||||| ||||||| |||| |||  ||||||||  ||||  ||||||||||||||||||    
T  787363 gtttatggagataagctgaaaacagcttatggacatgtcataagctgttttcataagttctcacaaacagtgtcacaagtgcttatgccagtagata 787459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 26857161 - 26857093
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaag 144  Q
    |||||||||||||||| ||||||||||||||||| || || ||||  ||| ||||||||||||| ||||    
T  26857161 ctatcttggagagtttgtggaaataagctgaaaatagactctgaacctgtcataagttgttttcataag 26857093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 28803535 - 28803451
Alignment:
Q  122 atgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggcaaataagtcaatccaaa 206  Q
    |||| ||||||||||| | || | ||| |||||||||| ||||  |||||||||| |||||||||  ||||||||||||||||||    
T  28803535 atgtcataagttgtttccatatgttctctcaaacagtctcacatgtgcttatgccggtagataagctcaaataagtcaatccaaa 28803451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 41042072 - 41042012
Alignment:
Q  77 tatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttt 137  Q
    |||||||||||||||||||||||||| |||||||||   ||| | ||||||||||||||||    
T  41042072 tatcttggagagtttatggaaataagttgaaaacagctgatggacatgtaataagttgttt 41042012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 43065500 - 43065429
Alignment:
Q  77 tatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctct 148  Q
    |||| ||||||| |||| ||||||||||||||||| | |||| | |||| ||||||||||||| ||||||||    
T  43065500 tatcgtggagagcttattgaaataagctgaaaacaatttatggacatgtcataagttgttttcataagctct 43065429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 201
Target Start/End: Complemental strand, 5902576 - 5902477
Alignment:
Q  100 aagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggcaaataagtca 199  Q
    |||||||||||||| |||||| |||| ||||| ||||||| |||| |||  ||||||||| ||||  || |||||||  ||||||||  |||||||||||    
T  5902576 aagctgaaaacagtttatgaacatgtcataagctgttttcataagttcttccaaacagtctcacaagtgtttatgcc--tagataagttcaaataagtca 5902479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 34652087 - 34652026
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttt 137  Q
    ||||||||||||| ||||||||||||| |||||||||  |||| | |||| |||||||||||    
T  34652087 ctatcttggagagcttatggaaataagttgaaaacagcttatggacatgtcataagttgttt 34652026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 205
Target Start/End: Complemental strand, 35379067 - 35378938
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgc 175  Q
    ||||||||||||| ||||| ||||||||||||||||   |||||| | || || || ||||||| ||||||||    || ||||| ||| ||||||||||    
T  35379067 ctatcttggagagcttatgaaaataagctgaaaacaacttatgaacaagtcatcagctgttttcataagctctccttaagagtcagacaaatgcttatgc 35378968  T
Q  176 cagtagataagggcaaataagtcaatccaa 205  Q
     | || |||||  |||||||| ||||||||    
T  35378967 tattatataagctcaaataagccaatccaa 35378938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 186
Target Start/End: Original strand, 38388719 - 38388816
Alignment:
Q  90 ttatggaaataagctg-aaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataag 186  Q
    |||||||||||||||| |||||||| |||||| |||| ||||||||||  | |||| |||  ||||| ||||||||  |||||| || ||||||||||    
T  38388719 ttatggaaataagctgaaaaacagtttatgaacatgtcataagttgttaccataagttctcccaaacggtcacacaagtgcttaagctagtagataag 38388816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 13866943 - 13867027
Alignment:
Q  122 atgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggcaaataagtcaatccaaa 206  Q
    |||| ||| ||||||||| |||| ||| |||||||||| ||||  || ||||| |||||||||||  |||||| |||||||||||    
T  13866943 atgtcataggttgttttcttaagttctctcaaacagtctcacaagtgtttatggcagtagataagctcaaataggtcaatccaaa 13867027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 206
Target Start/End: Original strand, 35485951 - 35486067
Alignment:
Q  91 tatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggca 190  Q
    ||||||||| ||||||||||||  |||||| || | |||||||| ||| ||||| ||| |||||||||| ||||  | |||||| | |||||||||  ||    
T  35485951 tatggaaatgagctgaaaacagcttatgaacatatcataagttgctttagtaagttctctcaaacagtctcacaagttcttatgtcggtagataagttca 35486050  T
Q  191 aata-agtcaatccaaa 206  Q
    || | ||||||||||||    
T  35486051 aaaatagtcaatccaaa 35486067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 35809941 - 35810017
Alignment:
Q  131 gttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggcaaataagtcaatccaaaa 207  Q
    ||||||||||| ||||||  |||| |||| ||||  |||||||||| |||||||||  |||||||||||||| ||||    
T  35809941 gttgttttcgttagctctcccaaatagtctcacaactgcttatgccggtagataagctcaaataagtcaatctaaaa 35810017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 3611245 - 3611308
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaat-atgtaataagttgtttt 138  Q
    ||||||||||||  ||||| ||||||||| |||||||| ||||||| |||| ||||||||||||    
T  3611245 ctatcttggagaacttatgaaaataagctaaaaacagtttatgaataatgtcataagttgtttt 3611308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 208
Target Start/End: Complemental strand, 5043518 - 5043479
Alignment:
Q  169 cttatgccagtagataagggcaaataagtcaatccaaaaa 208  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  5043518 cttatgctagtagataaggtcaaataagtcaatccaaaaa 5043479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 159
Target Start/End: Complemental strand, 14299682 - 14299599
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtc 159  Q
    ||||||| || || |||| ||||||||||||||||| | |||| |||||| ||||||||||| | ||| ||||  |||||||||    
T  14299682 ctatctttgacagcttatagaaataagctgaaaacaatgtatggatatgtcataagttgtttccataaactcttccaaacagtc 14299599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 206
Target Start/End: Original strand, 8017429 - 8017583
Alignment:
Q  52 taagctataaacagttttcatgctctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatc 151  Q
    |||||| ||||| ||||||||   ||||||||||||  ||||| ||||| || |||||||   |||||| || | ||||| ||||||| |||| |||  |    
T  8017429 taagctgtaaactgttttcataagctatcttggagaacttatgaaaatacgcagaaaacaaattatgaacatatcataagctgttttcataagttctccc 8017528  T
Q  152 aaacagtcacacacatgcttatgccagtagataagggcaaataagtcaatccaaa 206  Q
    ||| | || ||||  |||||||| || |||||||   ||||||||||||||||||    
T  8017529 aaataatcgcacaagtgcttatgtcaatagataacctcaaataagtcaatccaaa 8017583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 16867758 - 16867812
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataa 130  Q
    ||||||||||||| ||||||||||||| ||||||||   ||||||||||| ||||    
T  16867758 ctatcttggagagcttatggaaataagttgaaaacaacttatgaatatgtcataa 16867812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 24098121 - 24098163
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatg 118  Q
    |||| |||||||| |||||||||||||||||||||||| ||||    
T  24098121 ctattttggagagcttatggaaataagctgaaaacagtttatg 24098163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 186
Target Start/End: Complemental strand, 27699564 - 27699470
Alignment:
Q  92 atggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataag 186  Q
    |||||||||||||||||||||  | ||   |||| ||||||||||||| ||| |||| |||||||||| |||| || |||| |||| || |||||    
T  27699564 atggaaataagctgaaaacagcatgtggtgatgtcataagttgttttcataaactctctcaaacagtctcacaaatacttacgccaataaataag 27699470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 159
Target Start/End: Complemental strand, 28677705 - 28677627
Alignment:
Q  81 ttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtc 159  Q
    |||||||| |||||||||||||| |||||||   |||||| |||| ||||| ||||||| |||| |||  |||||||||    
T  28677705 ttggagagcttatggaaataagccgaaaacaacttatgaaaatgtcataagctgttttcataagttctcccaaacagtc 28677627  T

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Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 33256774 - 33256831
Alignment:
Q  91 tatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctct 148  Q
    |||| ||||||||||| |||||| |||||| |||| ||||| ||||||| ||||||||    
T  33256774 tatgaaaataagctgagaacagtttatgaacatgtcataagctgttttcataagctct 33256831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 206
Target Start/End: Complemental strand, 41032997 - 41032876
Alignment:
Q  85 agagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagata 184  Q
    |||||||||||||||||||||||||||   |||  | ||| || |||||||||   |||| ||| |||||||||  |||| ||| |||||| || || ||    
T  41032997 agagtttatggaaataagctgaaaacaacttatagacatggaagaagttgtttctataagttctctcaaacagtatcacaaatgtttatgcaagcaggta 41032898  T
Q  185 agggcaaataagtcaatccaaa 206  Q
    |   ||||||||||||||||||    
T  41032897 aaatcaaataagtcaatccaaa 41032876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 1647263 - 1647323
Alignment:
Q  84 gagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaag 144  Q
    ||||| |||||||||||||||||||||||  |||||  |||| ||||| ||||||| ||||    
T  1647263 gagagcttatggaaataagctgaaaacagcttatgagcatgtcataagctgttttcataag 1647323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 148
Target Start/End: Complemental strand, 1742107 - 1742011
Alignment:
Q  52 taagctataaacagttttcatgctctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctct 148  Q
    |||| ||||| | ||||||||  |||||| || |||||||||||||||||| |||| | ||  |||| | |||| ||||||||||| | ||||||||    
T  1742107 taagatataagctgttttcataatctatcatgaagagtttatggaaataagttgaagatagcttatgcacatgtcataagttgtttccataagctct 1742011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 3235435 - 3235399
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacag 112  Q
    |||||||| | ||||||||||||||||||||||||||    
T  3235435 ctatcttgaaaagtttatggaaataagctgaaaacag 3235399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 206
Target Start/End: Original strand, 10285893 - 10286009
Alignment:
Q  90 ttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggc 189  Q
    ||||||||||||| |||||||||  |||| | |||| ||||||| ||||| ||||||  | |||||  ||| |||  ||||||||| | ||||||||       
T  10285893 ttatggaaataagttgaaaacagcttatggacatgtcataagttattttcataagctaaaccaaaccctcatacaagtgcttatgcaaatagataagctt 10285992  T
Q  190 aaataagtcaatccaaa 206  Q
    ||||||| |||||||||    
T  10285993 aaataagacaatccaaa 10286009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 27237938 - 27237862
Alignment:
Q  82 tggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagt 158  Q
    ||||||||||||||||||||||| |||||||  |||| | |||| ||||| |||||   |||| |||| ||||||||    
T  27237938 tggagagtttatggaaataagctaaaaacagcttatgtacatgtcataagctgtttctataagttctaccaaacagt 27237862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 29628794 - 29628750
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaa 120  Q
    |||||||||| | ||||||||||||||||||||||| | ||||||    
T  29628794 ctatcttggaaaatttatggaaataagctgaaaacaatttatgaa 29628750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 33941928 - 33941996
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaag 144  Q
    |||||||||||||||||||  |||||| ||||| |||  ||||||  ||| ||||||||||||| ||||    
T  33941928 ctatcttggagagtttatgataataagttgaaagcagcttatgaacttgtcataagttgttttcataag 33941996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 36852472 - 36852524
Alignment:
Q  57 tataaacagttttcatgctctatcttggagagtttatggaaataagctgaaaa 109  Q
    ||||||| ||||||||   ||||||||||||| |||||||||||| |||||||    
T  36852472 tataaactgttttcataagctatcttggagagcttatggaaataatctgaaaa 36852524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 186
Target Start/End: Complemental strand, 7918497 - 7918387
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgc 175  Q
    ||||||||||||| |||| |||||||| || ||||||  |||||| ||||  |||||||||||| ||||||||  ||||||||| | ||  |||||||||    
T  7918497 ctatcttggagagcttattgaaataagttggaaacagcttatgaacatgtcttaagttgttttcataagctctcccaaacagtctctcatctgcttatgc 7918398  T
Q  176 cagtagataag 186  Q
    || ||||||||    
T  7918397 cattagataag 7918387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 79 - 164
Target Start/End: Original strand, 30918135 - 30918219
Alignment:
Q  79 tcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacaca 164  Q
    |||||||||| ||||||||||||||||||||||   |||||| |||| | ||||||||||| |||||||| |||||||||| ||||    
T  30918135 tcttggagagcttatggaaataagctgaaaacaacttatgaa-atgtcacaagttgttttcataagctctctcaaacagtctcaca 30918219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 85 - 206
Target Start/End: Complemental strand, 43368742 - 43368621
Alignment:
Q  85 agagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagata 184  Q
    |||||| ||| ||||||| |||||| ||   ||||| |||| ||||||||||||| |||||| |  ||| ||||| |||| |||||||||  ||||||||    
T  43368742 agagttcatgaaaataagttgaaaatagctaatgaacatgtcataagttgttttcataagctgttacaaccagtctcacaaatgcttatgttagtagata 43368643  T
Q  185 agggcaaataagtcaatccaaa 206  Q
    ||  ||||||||||||||||||    
T  43368642 agatcaaataagtcaatccaaa 43368621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 203
Target Start/End: Original strand, 43504770 - 43504897
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgc 175  Q
    ||||||||||||  |||||||||||||||||||||||  ||| || | ||  |||||||||||| | || |||   |||||||||||||  |||||| ||    
T  43504770 ctatcttggagaacttatggaaataagctgaaaacagcttataaacaagtcgtaagttgttttcatcagttctccgaaacagtcacacaagtgcttaagc 43504869  T
Q  176 cagtagataagggcaaataagtcaatcc 203  Q
    |||||||||||   ||||||| ||||||    
T  43504870 cagtagataagcttaaataagccaatcc 43504897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 202
Target Start/End: Complemental strand, 3536995 - 3536870
Alignment:
Q  77 tatcttggagagtttatggaaataagctgaaaacagtctatgaa-tatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgc 175  Q
    |||||||||||  |||||||||||||||||||||| | ||||||  |||| ||||| |||||  ||||  ||| || || ||||||||| | ||||||||    
T  3536995 tatcttggagaacttatggaaataagctgaaaacaatttatgaacaatgtcataagctgtttctgtaaattctctcgaatagtcacaca-aagcttatgc 3536897  T
Q  176 cagtagataagggcaaataagtcaatc 202  Q
    |||||||||||  |||||||| |||||    
T  3536896 cagtagataagctcaaataagacaatc 3536870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 203
Target Start/End: Original strand, 6950350 - 6950468
Alignment:
Q  85 agagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagata 184  Q
    |||| ||||||||||||||||||||||   |||  | |||| ||| ||||||| | ||||||||  |||||| || |||| ||| |||||||||||||||    
T  6950350 agagcttatggaaataagctgaaaacaacttatcgacatgtcataggttgtttacataagctctcccaaacaatctcacaaatgtttatgccagtagata 6950449  T
Q  185 agggcaaataagtcaatcc 203  Q
    |   |||||||||||||||    
T  6950450 aactcaaataagtcaatcc 6950468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 14926967 - 14926897
Alignment:
Q  142 aagctctatcaaacagtcacacacatgcttatgccagtagataagggcaaataagtcaatccaaaaaagcc 212  Q
    ||||||| |||||||||| ||||  |||||||||||||| |||||  |||||||||||||||||| |||||    
T  14926967 aagctctctcaaacagtctcacaagtgcttatgccagtaaataagttcaaataagtcaatccaaacaagcc 14926897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 185
Target Start/End: Complemental strand, 30191180 - 30191083
Alignment:
Q  88 gtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataa 185  Q
    ||||||||||||||||||||||||   | |||| |||| ||||||||||| | ||||||||  |||||||||  |||  ||||||||||| |||||||    
T  30191180 gtttatggaaataagctgaaaacaagttttgaacatgtcataagttgtttccataagctctcccaaacagtctaacaagtgcttatgccaatagataa 30191083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 56 - 156
Target Start/End: Complemental strand, 779132 - 779032
Alignment:
Q  56 ctataaacagttttcatgctctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaac 155  Q
    |||||||| ||||||||   |||||||||||||| ||   ||||||| ||||||||   |||||| |||| |||||||||||||||||| ||| ||||||    
T  779132 ctataaactgttttcataaactatcttggagagtgtaccaaaataagatgaaaacaacttatgaacatgtcataagttgttttcgtaagttctttcaaac 779033  T
Q  156 a 156  Q
    |    
T  779032 a 779032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 98 - 206
Target Start/End: Complemental strand, 2488037 - 2487929
Alignment:
Q  98 ataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggcaaataagt 197  Q
    ||||||| |||||||| | |||| |||| ||||||||||||| |||| |||  ||||||||| ||||  |||||||| |||||||| |   ||||||||     
T  2488037 ataagctaaaaacagtttttgaacatgttataagttgttttcataagttctcccaaacagtctcacaagtgcttatgtcagtagatgaactcaaataagc 2487938  T
Q  198 caatccaaa 206  Q
    |||||||||    
T  2487937 caatccaaa 2487929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 28769414 - 28769355
Alignment:
Q  52 taagctataaacagttttcatgctctatcttggagagtttatggaaataagctgaaaaca 111  Q
    |||||||||| | ||||||||   |||| |||||||||||||||||||||||||||||||    
T  28769414 taagctataagctgttttcataagctattttggagagtttatggaaataagctgaaaaca 28769355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 206
Target Start/End: Original strand, 1561347 - 1561426
Alignment:
Q  127 ataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggcaaataagtcaatccaaa 206  Q
    |||||||||||| || |||||| ||||||| || ||||  || |||||||| ||||||||  ||||||| ||||||||||    
T  1561347 ataagttgtttttgtgagctctctcaaacaatctcacaagtgtttatgccattagataagatcaaataaatcaatccaaa 1561426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 206
Target Start/End: Original strand, 2091801 - 2091912
Alignment:
Q  95 gaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggcaaata 194  Q
    |||||||| ||||||||   |||| |||| | |||||||||||| || |||||| ||||||| || ||||  || |||||||| | ||||||  ||||||    
T  2091801 gaaataagttgaaaacaacttatggatatatcataagttgtttttgtgagctctctcaaacaatctcacaagtgtttatgccattggataagatcaaata 2091900  T
Q  195 agtcaatccaaa 206  Q
    | ||||||||||    
T  2091901 aatcaatccaaa 2091912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 206
Target Start/End: Complemental strand, 6526252 - 6526173
Alignment:
Q  127 ataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggcaaataagtcaatccaaa 206  Q
    ||||||||||||| |||| ||| ||||||| || ||||   ||||||||||||||||| |  | ||||||||||||||||    
T  6526252 ataagttgttttcctaagttctctcaaacaatctcacaagggcttatgccagtagataggctcgaataagtcaatccaaa 6526173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 111
Target Start/End: Original strand, 8062324 - 8062383
Alignment:
Q  52 taagctataaacagttttcatgctctatcttggagagtttatggaaataagctgaaaaca 111  Q
    |||||||||| | ||||||||   ||||||| ||||| ||||||||||||||||||||||    
T  8062324 taagctataagctgttttcataagctatcttagagagattatggaaataagctgaaaaca 8062383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 111
Target Start/End: Complemental strand, 25869317 - 25869282
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaaca 111  Q
    ||||| ||||||||||||||||||||||||||||||    
T  25869317 ctatcatggagagtttatggaaataagctgaaaaca 25869282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 37353300 - 37353245
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataag 131  Q
    ||||||| ||||| ||||| |||||| ||||||||||| ||||||||||| |||||    
T  37353300 ctatctttgagagcttatgaaaataatctgaaaacagtttatgaatatgtcataag 37353245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 38036187 - 38036128
Alignment:
Q  52 taagctataaacagttttcatgctctatcttggagagtttatggaaataagctgaaaaca 111  Q
    |||||||||||| ||||| ||   ||||||||||||| |||| |||||||||||||||||    
T  38036187 taagctataaactgttttgattagctatcttggagagcttattgaaataagctgaaaaca 38036128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 42370434 - 42370375
Alignment:
Q  54 agctataaacagttttcatgctctatcttggagagtttatggaaataagctgaaaacagt 113  Q
    |||||||||| ||| ||||   ||||| || |||||||||||||||||||||||||||||    
T  42370434 agctataaactgttctcataagctatcatgaagagtttatggaaataagctgaaaacagt 42370375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 43704413 - 43704366
Alignment:
Q  90 ttatggaaataagctgaaaacagtctatgaatatgtaataagttgttt 137  Q
    ||||||||||||||| |||||||| |||||| |||| |||||||||||    
T  43704413 ttatggaaataagcttaaaacagtttatgaacatgtcataagttgttt 43704366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 186
Target Start/End: Complemental strand, 11569508 - 11569398
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgc 175  Q
    ||||| ||||||| || || ||||||||||||||||   |||| | |||| ||||| ||||| | |||||||| | |||||||| ||||  || ||||||    
T  11569508 ctatcatggagagattttgaaaataagctgaaaacaacttatgtacatgtcataagctgtttccataagctctcttaaacagtctcacaagtggttatgc 11569409  T
Q  176 cagtagataag 186  Q
    ||| |||||||    
T  11569408 cagcagataag 11569398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 175
Target Start/End: Original strand, 14949894 - 14949984
Alignment:
Q  85 agagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgc 175  Q
    |||| |||| ||||||||||||||||||  |||| | |||| ||||||| ||||| ||||||||   |||||||| |||| ||| ||||||    
T  14949894 agagattatagaaataagctgaaaacagcttatggacatgtcataagttattttcataagctctcctaaacagtctcacaaatgtttatgc 14949984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 202
Target Start/End: Complemental strand, 39881748 - 39881646
Alignment:
Q  100 aagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggcaaataagtca 199  Q
    ||||||||||| || |||||| |||| ||||| | |||||  |||||||  |||||| || ||||  || |||||||| ||||||||  |||||||||||    
T  39881748 aagctgaaaactgtttatgaacatgtcataagctattttcacaagctcttccaaacaatctcacaagtgtttatgccaatagataagttcaaataagtca 39881649  T
Q  200 atc 202  Q
    |||    
T  39881648 atc 39881646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 7918783 - 7918722
Alignment:
Q  125 taataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataag 186  Q
    ||||||||||||||| ||||||||  ||||||||| ||||  || |||||| ||||||||||    
T  7918783 taataagttgttttcataagctctcccaaacagtctcacaagtgtttatgctagtagataag 7918722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 362
Target Start/End: Original strand, 8060658 - 8060703
Alignment:
Q  317 aagttataacttataagatgttttcattggcaatcttagagagctt 362  Q
    ||||||||||||||||| |||||||||  |||||| ||||||||||    
T  8060658 aagttataacttataagctgttttcataagcaatcctagagagctt 8060703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 164
Target Start/End: Complemental strand, 41442481 - 41442416
Alignment:
Q  99 taagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacaca 164  Q
    ||||||||||||||  |||||| |||| |||| |||||||| |||| ||| |||||||||| ||||    
T  41442481 taagctgaaaacagcatatgaacatgtcataaattgttttcataagttctgtcaaacagtctcaca 41442416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 159
Target Start/End: Original strand, 10120775 - 10120859
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatga-atatgtaataagttgttttcgtaagctctatcaaacagtc 159  Q
    |||| |||||||  ||||| |||||||||||||||||  ||||| | |||| ||||| ||||||| |||| ||| ||||||||||    
T  10120775 ctatattggagaacttatgaaaataagctgaaaacagcatatgataaatgtcataagctgttttcataagttctctcaaacagtc 10120859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 112
Target Start/End: Original strand, 31705112 - 31705140
Alignment:
Q  84 gagagtttatggaaataagctgaaaacag 112  Q
    |||||||||||||||||||||||||||||    
T  31705112 gagagtttatggaaataagctgaaaacag 31705140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 186
Target Start/End: Original strand, 34939763 - 34939873
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgc 175  Q
    ||||| |||||||||||||||||||||||||||||| | |||| | |||| ||||| ||||| ||||||||||   |||||||  |||| ||| |||||     
T  34939763 ctatcctggagagtttatggaaataagctgaaaacaatttatggacatgtcataagctgtttccgtaagctctccaaaacagtttcacaaatgtttatgt 34939862  T
Q  176 cagtagataag 186  Q
    || ||||||||    
T  34939863 cactagataag 34939873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 76 - 201
Target Start/End: Original strand, 2455829 - 2455954
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgc 175  Q
    ||||||||||||| ||||||||||||| |||||| ||| ||||   |||| ||||||||||| | ||||||||   ||||| || | ||  |||||||||    
T  2455829 ctatcttggagagcttatggaaataagttgaaaatagtttatgggcatgtcataagttgtttccataagctcttctaaacaatctcgcaagtgcttatgc 2455928  T
Q  176 cagtagataagggcaaataagtcaat 201  Q
    | |||||||||  |||||||||||||    
T  2455929 cggtagataagctcaaataagtcaat 2455954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 205
Target Start/End: Original strand, 32171487 - 32171615
Alignment:
Q  77 tatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgcc 176  Q
    |||| ||||||| ||||||||||||||||||||||||  ||| |  | | ||||||||||| | ||||||||  ||| ||||| |||| ||||||||| |    
T  32171487 tatcctggagagcttatggaaataagctgaaaacagttcatggaggtatcataagttgtttccttaagctctcccaaccagtctcacaaatgcttatgtc 32171586  T
Q  177 agtagataagggcaaataagtcaatccaa 205  Q
    |||| |||||  |||||||  ||||||||    
T  32171587 agtaaataagttcaaataaaccaatccaa 32171615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 11393910 - 11393977
Alignment:
Q  79 tcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagct 146  Q
    ||||||||||||||||| |||||||||||||| |  ||||||| || |||||||||||||| ||||||    
T  11393910 tcttggagagtttatggtaataagctgaaaacgggttatgaatttgcaataagttgttttcataagct 11393977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 4420662 - 4420723
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttt 137  Q
    ||||||||||||| |||||||||||||||||||||||  |||||| |||| |||| ||||||    
T  4420662 ctatcttggagagcttatggaaataagctgaaaacagcttatgaacatgtcataatttgttt 4420723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 148
Target Start/End: Complemental strand, 725697 - 725634
Alignment:
Q  85 agagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctct 148  Q
    |||| |||||||||||||||||||| |||||| | | |||| ||||||||||||| ||||||||    
T  725697 agagcttatggaaataagctgaaaatagtctacggacatgtcataagttgttttcataagctct 725634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 206
Target Start/End: Complemental strand, 26559239 - 26559160
Alignment:
Q  127 ataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggcaaataagtcaatccaaa 206  Q
    ||||||||||||| |||| |||  ||||||||| |||| |||||||||||||||| |||   ||||||||| ||||||||    
T  26559239 ataagttgttttcataagttcttccaaacagtctcacaaatgcttatgccagtaggtaaactcaaataagttaatccaaa 26559160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 206
Target Start/End: Original strand, 103474 - 103579
Alignment:
Q  100 aagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggcaaataagtca 199  Q
    |||||| ||||||| ||||||||||| ||||| |||||| ||||| ||| || |||| ||||||| |  ||||||| | || |||||  |||||||||||    
T  103474 aagctgtaaacagtttatgaatatgtcataagctgtttttgtaagttctctcgaacaatcacaca-aaacttatgctaatatataagctcaaataagtca 103572  T
Q  200 atccaaa 206  Q
    |||||||    
T  103573 atccaaa 103579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 206
Target Start/End: Complemental strand, 20861704 - 20861619
Alignment:
Q  121 tatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataagggcaaataagtcaatccaaa 206  Q
    ||||||||||| ||||||| ||||||||  |||| |||| | || || ||||||||||||| ||||  |||||||| |||||||||    
T  20861704 tatgtaataagatgttttcataagctctcccaaaaagtctcgcatatacttatgccagtaggtaagctcaaataagacaatccaaa 20861619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 22743519 - 22743572
Alignment:
Q  95 gaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctct 148  Q
    ||||||||||||||||||  |||||| |||||||||||||||||| | ||||||    
T  22743519 gaaataagctgaaaacagcttatgaacatgtaataagttgttttcatgagctct 22743572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 34633171 - 34633106
Alignment:
Q  79 tcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaag 144  Q
    ||||||||||||| ||||||||||||||||| || || ||||  ||| ||||||||||||| ||||    
T  34633171 tcttggagagtttgtggaaataagctgaaaatagactctgaacctgtcataagttgttttcataag 34633106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 206
Target Start/End: Complemental strand, 2460196 - 2460072
Alignment:
Q  82 tggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtag 181  Q
    ||||||| ||||||||||||| ||||||||   ||   | |||| ||||||||||| | |||||||| |||||||||| ||||  | ||||||| |||      
T  2460196 tggagagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatgctagttt 2460097  T
Q  182 ataagggcaaataagtcaatccaaa 206  Q
    |||||  ||||||||| ||||||||    
T  2460096 ataagctcaaataagttaatccaaa 2460072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 144
Target Start/End: Original strand, 31624085 - 31624177
Alignment:
Q  52 taagctataaacagttttcatgctctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaag 144  Q
    |||||||||| | ||||||||   ||||||||||||  ||||| ||||||| |||||||||  |||||| |||| ||||| ||||||| ||||    
T  31624085 taagctataagctgttttcataggctatcttggagaaattatgaaaataagttgaaaacagcttatgaacatgtcataagctgttttcataag 31624177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 206
Target Start/End: Complemental strand, 7785817 - 7785665
Alignment:
Q  52 taagctataaacagttttcatgctctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatc 151  Q
    |||||||||||  || ||||||||  || |||||||| ||||||||||||||||||||||   |||  | |||| ||||| |||||  |||| |||  ||    
T  7785817 taagctataaattgtcttcatgct--attttggagagcttatggaaataagctgaaaacaacttatagacatgtcataagctgtttctgtaaactccttc 7785720  T
Q  152 aaacagtcacacacatgcttatgccagtagataagggcaaataagtcaatccaaa 206  Q
    || ||||| || |  |||||||| ||||||||||   |||||||| |||||||||    
T  7785719 aatcagtcccaaaagtgcttatgtcagtagataaattcaaataagacaatccaaa 7785665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 111
Target Start/End: Complemental strand, 17241303 - 17241268
Alignment:
Q  76 ctatcttggagagtttatggaaataagctgaaaaca 111  Q
    ||||||||||||||||||||||||||| ||||||||    
T  17241303 ctatcttggagagtttatggaaataagttgaaaaca 17241268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 206
Target Start/End: Original strand, 30863269 - 30863395
Alignment:
Q  80 cttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagt 179  Q
    |||| |||| |||| ||| |||||||||||||   |||| | |||| ||||||||||||| ||||||||| |||| ||||  |||  || |||||||| |    
T  30863269 cttgaagagcttatagaagtaagctgaaaacaacttatgtacatgtcataagttgttttcataagctctaccaaagagtctaacaagtgtttatgccaat 30863368  T
Q  180 agataagggcaaataagtcaatccaaa 206  Q
    | ||| |  ||||||||||| ||||||    
T  30863369 aaataggctcaaataagtcactccaaa 30863395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 31420978 - 31421036
Alignment:
Q  90 ttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctct 148  Q
    ||||| ||||||||||||||||   ||||||||||  ||||||||||||| ||||||||    
T  31420978 ttatgaaaataagctgaaaacaacttatgaatatgcgataagttgttttcataagctct 31421036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 3528811 - 3528884
Alignment:
Q  65 gttttcatgctctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgtttt 138  Q
    |||||||||  ||||||||||||| ||||| ||||||| ||||||||   |||| | |||| ||||||||||||    
T  3528811 gttttcatgaactatcttggagagcttatgaaaataagatgaaaacaagttatggacatgtcataagttgtttt 3528884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 32205971 - 32205934
Alignment:
Q  169 cttatgccagtagataagggcaaataagtcaatccaaa 206  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  32205971 cttatgctagtagataaggtcaaataagtcaatccaaa 32205934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 156
Target Start/End: Complemental strand, 32578022 - 32577957
Alignment:
Q  91 tatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaaca 156  Q
    ||||||||||||||||||||||   | | | |||| ||||||||||||| |||||||| |||||||    
T  32578022 tatggaaataagctgaaaacagctcaaggacatgtcataagttgttttcataagctctctcaaaca 32577957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 159
Target Start/End: Original strand, 33498652 - 33498721
Alignment:
Q  90 ttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtc 159  Q
    |||||||||||||||||||| |  ||||  | |||| ||||||||||||| ||||||||| |||| ||||    
T  33498652 ttatggaaataagctgaaaataacctatagacatgtcataagttgttttcataagctctaccaaaaagtc 33498721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 835321 - 835265
Alignment:
Q  55 gctataaacagttttcatgctctatcttggagagtttatggaaataagctgaaaaca 111  Q
    ||||||| ||||||||||   ||||||||||||  ||||| ||||||||||||||||    
T  835321 gctataagcagttttcataagctatcttggagaacttatgaaaataagctgaaaaca 835265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 159
Target Start/End: Original strand, 2023593 - 2023673
Alignment:
Q  79 tcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtc 159  Q
    |||||||||| |||| ||||||||||||||||||| | |||  | || ||||||||||| |  ||||||| | ||||||||    
T  2023593 tcttggagagcttatagaaataagctgaaaacagtttgtgatcaggtcataagttgtttccacaagctctctgaaacagtc 2023673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 3168336 - 3168276
Alignment:
Q  52 taagctataaacagttttcatgctctatcttggagagtttatggaaataagctgaaaacag 112  Q
    |||||||||||| |||||| |   ||||| ||||||| ||| |||||||||||||||||||    
T  3168336 taagctataaactgttttcttaagctatcctggagagcttaaggaaataagctgaaaacag 3168276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 206
Target Start/End: Original strand, 7148691 - 7148815
Alignment:
Q  82 tggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtag 181  Q
    ||||||| ||||| ||||||| |||||| ||  |||| | | || ||||||||||| ||||||||||    |||| || ||||  ||||||||| | |||    
T  7148691 tggagagcttatgaaaataagttgaaaatagcttatggacaagtcataagttgtttccgtaagctctgctgaacactctcacaagtgcttatgcgactag 7148790  T
Q  182 ataagggcaaataagtcaatccaaa 206  Q
    |||||  |||||||||||| |||||    
T  7148791 ataagctcaaataagtcaaaccaaa 7148815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 8147113 - 8147034
Alignment:
Q  79 tcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtc 159  Q
    |||||||||| |||||||  |||| |||||| ||  |||| |||||| ||||||||||||| |||||||| | ||||||||    
T  8147113 tcttggagagcttatggag-taagttgaaaatagcttatgcatatgttataagttgttttcataagctctttgaaacagtc 8147034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 8348291 - 8348327
Alignment:
Q  122 atgtaataagttgttttcgtaagctctatcaaacagt 158  Q
    |||| |||||||||||||||||||||| |||||||||    
T  8348291 atgttataagttgttttcgtaagctctctcaaacagt 8348327  T

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Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 206
Target Start/End: Original strand, 24332967 - 24333087
Alignment:
Q  86 gagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataa 185  Q
    ||||||| | ||||||||||||||||   ||||||||||| | |||||||||   ||||||| | ||||||||   ||| ||||||||| ||||| ||||    
T  24332967 gagtttaagaaaataagctgaaaacaacgtatgaatatgtcaaaagttgtttcaataagctccaccaaacagtatgacaaatgcttatgtcagtacataa 24333066  T
Q  186 gggcaaataagtcaatccaaa 206  Q
        ||||| |||||||||||    
T  24333067 actgaaatatgtcaatccaaa 24333087  T

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Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 148
Target Start/End: Complemental strand, 28641824 - 28641728
Alignment:
Q  52 taagctataaacagttttcatgctctatcttggagagtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctct 148  Q
    |||||||||||| |||||||    ||||  || |||| ||||| ||||||||| |||||||  |||||| |||| ||||| ||||||| ||||||||    
T  28641824 taagctataaactgttttcaatagctattctgcagagcttatgaaaataagctaaaaacagcttatgaacatgttataagctgttttcataagctct 28641728  T

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Target: scaffold0608 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 158
Target Start/End: Complemental strand, 9668 - 9606
Alignment:
Q  96 aaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagt 158  Q
    ||||||||| |||||||  |||||| |||||||||||||||||| |||| ||| |||||||||    
T  9668 aaataagctaaaaacagcttatgaacatgtaataagttgttttcataagttctctcaaacagt 9606  T

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Target: scaffold0311 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 185
Target Start/End: Complemental strand, 10656 - 10559
Alignment:
Q  88 gtttatggaaataagctgaaaacagtctatgaatatgtaataagttgttttcgtaagctctatcaaacagtcacacacatgcttatgccagtagataa 185  Q
    ||||||||||||||||||||||||   |||| | |||| || |||||||| | |||||| | |||||||||| ||||  | |||||| ||||| ||||    
T  10656 gtttatggaaataagctgaaaacaacttatggacatgtcattagttgtttacataagctttgtcaaacagtctcacaagtacttatgtcagtacataa 10559  T

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