View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6390_low_6 (Length: 341)
Name: NF6390_low_6
Description: NF6390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6390_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 24 - 323
Target Start/End: Original strand, 2137844 - 2138143
Alignment:
| Q |
24 |
acacaaccatgcattcaccaacatatggatccgacctaacaacacaaccaaacacaacctttgtacaagcagacccatcaaatttccgacaagttgttca |
123 |
Q |
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| T |
2137844 |
acacaaccatgcattcaccaacatatggatccgacctaacaacacaaccaaacacaacctttgtacaagcagacccatcaaatttccgacaagttgttca |
2137943 |
T |
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| Q |
124 |
aaaactaaccggagcatcacaagacccatcagcccaaaaactcccactcacactcccatctcgtctaacagcccaagcccaagcccaagcccaccgtcct |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2137944 |
aaaactaaccggagcatcacaagacccatcagcccaaaaactcccactaacactcccatctcgtctaacagcccaagcccaagcccaagcccaccgtcct |
2138043 |
T |
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| Q |
224 |
ctaccaacaaccaccatggaaccaccaatgggcttnnnnnnncccaacttcaaactccacgaacgccgttctaaaaaactccaactcaacgtgtcggaaa |
323 |
Q |
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| T |
2138044 |
ctaccaacaaccaccatggaaccaccaatgggcttaaaaaaacccaacttcaaactccacgaacgccgttctaaaaaactccaactcaacgtgtcggaaa |
2138143 |
T |
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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 173
Target Start/End: Complemental strand, 20017042 - 20016949
Alignment:
| Q |
80 |
acctttgtacaagcagacccatcaaatttccgacaagttgttcaaaaactaaccggagcatcacaagacccatcagcccaaaaactcccactca |
173 |
Q |
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||||| ||| |||| || ||||||||||||||||||||||| |||||||||||||||||||| |||||| || || ||||||||| ||||||| |
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| T |
20017042 |
accttggtagaagctgaaccatcaaatttccgacaagttgtccaaaaactaaccggagcatctcaagactcaacactccaaaaacttccactca |
20016949 |
T |
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