View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6390_low_7 (Length: 334)
Name: NF6390_low_7
Description: NF6390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6390_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 299
Target Start/End: Complemental strand, 13112183 - 13111895
Alignment:
| Q |
11 |
cagagaagaaaggcaacaagagagttgtcaattaaagaagggctttattacatggttgatcctgagattgaagaaacatcaatgagtggtaaaagtttta |
110 |
Q |
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| T |
13112183 |
cagaaaagaaaggcaacaagagagttgtcaattaaagaaggactttattacatggttgatcctgagattgaagaaacatcaaggagtggtaaaagtttta |
13112084 |
T |
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| Q |
111 |
ataattttggtgctactgttttggcttcaagatttgctgcaaatacaaagaaagggaatgataagattcaagaaagtgatcctgtgccacagttttttaa |
210 |
Q |
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| T |
13112083 |
ataattttggtgctactgttttggcttcaagatttgctgcaaatacaaagaaagggaatgataagattcaagaaagtgaccctgtgccacagttgtttaa |
13111984 |
T |
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| Q |
211 |
acctcatgaacctaatttctctgatgatcatgtttagtgagtaaataacaaggtgaaattcaaatgagtttaacactaattcaatagga |
299 |
Q |
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| T |
13111983 |
acctcatgaacctaatttctctgatgatcatgtttagtgagtaaataacaaggtgaaattcaaatgagtttaacactaattcaatagga |
13111895 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 40678705 - 40678755
Alignment:
| Q |
115 |
ttttggtgctactgttttggcttcaagatttgctgcaaatacaaagaaagg |
165 |
Q |
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| T |
40678705 |
ttttggtgctacatttttggcttcaaaatttgctgcaaacactaagaaagg |
40678755 |
T |
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