View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6390_low_8 (Length: 264)

Name: NF6390_low_8
Description: NF6390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6390_low_8
NF6390_low_8
[»] chr4 (4 HSPs)
chr4 (1-254)||(1313166-1313418)
chr4 (4-47)||(1313125-1313168)
chr4 (12-46)||(55084492-55084526)
chr4 (57-110)||(46797097-46797150)
[»] chr3 (3 HSPs)
chr3 (71-110)||(41057252-41057291)
chr3 (8-63)||(52267430-52267485)
chr3 (14-110)||(25925769-25925865)
[»] chr8 (2 HSPs)
chr8 (25-90)||(14926936-14927001)
chr8 (56-110)||(24326113-24326167)
[»] chr6 (1 HSPs)
chr6 (15-66)||(13908491-13908542)
[»] chr5 (5 HSPs)
chr5 (14-65)||(3504771-3504822)
chr5 (14-63)||(14331394-14331443)
chr5 (18-110)||(443966-444058)
chr5 (26-110)||(11684453-11684536)
chr5 (15-63)||(31688067-31688115)
[»] scaffold0159 (1 HSPs)
scaffold0159 (8-89)||(27022-27103)
[»] chr7 (2 HSPs)
chr7 (12-61)||(12234885-12234934)
chr7 (8-60)||(5628564-5628615)
[»] chr2 (2 HSPs)
chr2 (8-89)||(5781690-5781771)
chr2 (17-61)||(43635097-43635141)


Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 1313166 - 1313418
Alignment:
Q  1 tacggcaatcatagagagcttttgaaaataagctgaaaccagcttacagacaagtcataagctttccaacacagtctcacaagtgcttattcatgtagat 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||    
T  1313166 tacgccaatcatagagagcttttgaaaataagctgaaaccagcttacagacaagtcataagctttccaaca--gtctcacaagtgcttatacatgtagat 1313263  T
Q  101 aagctcaaatctgctatctaaaaaggcctgactccatgatatgttacaaactgtacacttcaaatggaagttctgtacgagtgtttgatatttgtacaat 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1313264 aagctcaaatctgttatctaaaaaggcctgactccatgatatgttacaaactgtacacttcaaatggaagttctgtacgagtgtttgatatttgtacaat 1313363  T
Q  201 atcgacacatgtggttgta-aaaatcaatttcaccttttcaagttattatctgtg 254  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  1313364 atcgacacatgtgattgtagaaaatcaatttcaccttttcaagttattatctgtg 1313418  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 1313125 - 1313168
Alignment:
Q  4 ggcaatcatagagagcttttgaaaataagctgaaaccagcttac 47  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||    
T  1313125 ggcaatcttagagagcttttgaaaataagctcaaaccagcttac 1313168  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 55084526 - 55084492
Alignment:
Q  12 tagagagcttttgaaaataagctgaaaccagctta 46  Q
    |||||||||| ||||||||||||||||||||||||    
T  55084526 tagagagcttatgaaaataagctgaaaccagctta 55084492  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 46797097 - 46797150
Alignment:
Q  57 ataagctttccaacacagtctcacaagtgcttattcatgtagataagctcaaat 110  Q
    ||||||||||  | |||||||||||||||||||| || ||| ||||||||||||    
T  46797097 ataagctttcataaacagtctcacaagtgcttatacaagtaaataagctcaaat 46797150  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 110
Target Start/End: Original strand, 41057252 - 41057291
Alignment:
Q  71 acagtctcacaagtgcttattcatgtagataagctcaaat 110  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  41057252 acagtctcacaagtgcttatgcatgtagataagctcaaat 41057291  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 52267430 - 52267485
Alignment:
Q  8 atcatagagagcttttgaaaataagctgaaaccagcttacagacaagtcataagct 63  Q
    ||||| |||||||| |||| ||||||| ||||||||||| | ||||||||||||||    
T  52267430 atcatggagagcttatgaagataagcttaaaccagcttaaaaacaagtcataagct 52267485  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 25925769 - 25925865
Alignment:
Q  14 gagagcttttgaaaataagctgaaaccagcttacagacaagtcataagctttccaacacagtctcacaagtgcttattcatgtagataagctcaaat 110  Q
    |||||||| |||||||||| ||||| |||||||   ||| |||||||| | || || ||||| | |||||||||||| |  ||||||||| ||||||    
T  25925769 gagagcttatgaaaataagttgaaaacagcttatgaacatgtcataagttctctaaaacagtgttacaagtgcttatgccagtagataagttcaaat 25925865  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 14927001 - 14926936
Alignment:
Q  25 aaaataagctgaaaccagcttacagacaagtcataagctttccaacacagtctcacaagtgcttat 90  Q
    ||||| |||||||| ||||||||||||| |||| ||||| ||  | ||||||||||||||||||||    
T  14927001 aaaattagctgaaaacagcttacagacacgtcacaagctctctcaaacagtctcacaagtgcttat 14926936  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 24326113 - 24326167
Alignment:
Q  56 cataagctttccaacacagtctcacaagtgcttattcatgtagataagctcaaat 110  Q
    |||||||| ||| | |||||||||||||||||||| |  ||||||||||||||||    
T  24326113 cataagctctcccaaacagtctcacaagtgcttatgccagtagataagctcaaat 24326167  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 13908491 - 13908542
Alignment:
Q  15 agagcttttgaaaataagctgaaaccagcttacagacaagtcataagctttc 66  Q
    ||||||| |||||||||||||||| ||||||||  ||| |||||||||||||    
T  13908491 agagcttatgaaaataagctgaaaacagcttacgaacatgtcataagctttc 13908542  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 3504771 - 3504822
Alignment:
Q  14 gagagcttttgaaaataagctgaaaccagcttacagacaagtcataagcttt 65  Q
    |||||||| || ||||||||||||| ||||||||| ||| ||||||||||||    
T  3504771 gagagcttatgtaaataagctgaaaacagcttacaaacatgtcataagcttt 3504822  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 14331394 - 14331443
Alignment:
Q  14 gagagcttttgaaaataagctgaaaccagcttacagacaagtcataagct 63  Q
    |||||||| |||||||||||||||| |||||||  |||| ||||||||||    
T  14331394 gagagcttatgaaaataagctgaaatcagcttatggacatgtcataagct 14331443  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 443966 - 444058
Alignment:
Q  18 gcttttgaaaataagctgaaaccagcttacagacaagtcataagctttccaacacagtctcacaagtgcttattcatgtagataagctcaaat 110  Q
    ||||||| | |||||||| || ||||||||| ||| ||||| |  | ||| | ||||||||||||||| |||| ||  |||||||||||||||    
T  443966 gcttttggagataagctggaaacagcttacaaacatgtcattacttctcccaaacagtctcacaagtgtttatgcaattagataagctcaaat 444058  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 11684453 - 11684536
Alignment:
Q  26 aaataagctgaaaccagcttacagacaagtcataagctttccaacacagtctcacaagtgcttattcatgtagataagctcaaat 110  Q
    ||||||| ||||| ||||||||| ||  |||||||||||||  | ||||||||||||||||| ||    ||||||||||||||||    
T  11684453 aaataagttgaaaacagcttaca-acgtgtcataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaat 11684536  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 31688067 - 31688115
Alignment:
Q  15 agagcttttgaaaataagctgaaaccagcttacagacaagtcataagct 63  Q
    ||||||| |||||||||| |||||  |||||| ||||||||||||||||    
T  31688067 agagcttatgaaaataagttgaaaatagcttatagacaagtcataagct 31688115  T

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Target: scaffold0159 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 27022 - 27103
Alignment:
Q  8 atcatagagagcttttgaaaataagctgaaaccagcttacagacaagtcataagctttccaacacagtctcacaagtgctta 89  Q
    |||||||||||||| || ||||||||||||| ||| |||   ||| |||||||||| ||  | ||||| |||||||||||||    
T  27022 atcatagagagcttatggaaataagctgaaaacagtttatgcacatgtcataagctctcgcaaacagtgtcacaagtgctta 27103  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 12234934 - 12234885
Alignment:
Q  12 tagagagcttttgaaaataagctgaaaccagcttacagacaagtcataag 61  Q
    |||||||||| || ||||||||||||| ||||||| ||||| ||||||||    
T  12234934 tagagagcttatggaaataagctgaaaacagcttatagacatgtcataag 12234885  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 5628615 - 5628564
Alignment:
Q  8 atcatagagagcttttgaaaataagctgaaaccagcttacagacaagtcataa 60  Q
    |||| ||||||||| |||||||||||||||| ||||||| ||||| |||||||    
T  5628615 atcacagagagcttatgaaaataagctgaaa-cagcttatagacatgtcataa 5628564  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 5781690 - 5781771
Alignment:
Q  8 atcatagagagcttttgaaaataagctgaaaccagcttacagacaagtcataagctttccaacacagtctcacaagtgctta 89  Q
    |||||||||||||| || ||||||||||||| ||| |||   ||| |||||||||| ||  | ||||| |||||||||||||    
T  5781690 atcatagagagcttatggaaataagctgaaaacagtttatgcacatgtcataagctctcgcaaacagtgtcacaagtgctta 5781771  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 43635141 - 43635097
Alignment:
Q  17 agcttttgaaaataagctgaaaccagcttacagacaagtcataag 61  Q
    ||||| |||||||||||| ||| ||||||||||||| ||||||||    
T  43635141 agcttatgaaaataagcttaaaacagcttacagacatgtcataag 43635097  T

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