View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6391_high_4 (Length: 306)
Name: NF6391_high_4
Description: NF6391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6391_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 13 - 290
Target Start/End: Original strand, 33273490 - 33273767
Alignment:
| Q |
13 |
aatatcttgatagagtgttgtaaataagtggtgtattagctgcaaaacttgcaattaagttaattgaattgttttattcataaactctttgttagcacat |
112 |
Q |
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| T |
33273490 |
aatatcttgatagagtgttgtaaataagtggtgtattagctgcaaaacttgcaattaagttgattgaattgttttattcataaactctttgttaacacag |
33273589 |
T |
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| Q |
113 |
ctgtcaattgatactaagaagaaatgttggttgtagttatcaatctattatcaaatttctcgtttgtaaaatgttggtctatctcaatatggtttgtctt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33273590 |
ctgtcaattgatactaagaagaaatgttggttgtagttatcaatctattatcaaatttctcgtttgtaaaatgttggtctatctcaatatggtttgtctt |
33273689 |
T |
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| Q |
213 |
gtcaagttaaacgggactataagcaacattgatggtcgcaatttatagtcacaaaacactttataggaccttcacact |
290 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33273690 |
gtcaagttaaacgggactatgagcaacattgatggtcgcaatttatcgtcacaaaacactttataggaccttcacact |
33273767 |
T |
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