View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6391_high_6 (Length: 239)
Name: NF6391_high_6
Description: NF6391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6391_high_6 |
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| [»] scaffold0074 (1 HSPs) |
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| [»] scaffold0264 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 20238133 - 20238354
Alignment:
| Q |
1 |
tgaaagtttcctaatagcacaaccgaggcaggttctgcaatcattgaacgacaagtctggcgtgcactgagctagacagtaaagcgtttgagattcagaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20238133 |
tgaaagtttcctaatagcacaaccgaggcaggttctgcaatcattgaacgacaagtctggcgtgcactgagctagacagtaaagcgtttgagattcagaa |
20238232 |
T |
|
| Q |
101 |
atctgtttttctatcgtggcaaacttcgtgtccttgtcaccagtaagtggacccgctgctttctctgcagttttattcatcgtcgaaaacaatataggca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20238233 |
atctgtttttctatcgtggcaaacttcgtgtccttgtcaccagtaagtggacccgctgctttctctgcagttttattcatcgtcgaaaacaatataggca |
20238332 |
T |
|
| Q |
201 |
tgaagctttttgtgttagatac |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
20238333 |
tgaagctttttgtgttagatac |
20238354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 22132117 - 22132338
Alignment:
| Q |
1 |
tgaaagtttcctaatagcacaaccgaggcaggttctgcaatcattgaacgacaagtctggcgtgcactgagctagacagtaaagcgtttgagattcagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22132117 |
tgaaagtttcctaatagcacaaccgaggcaggttctgcaatcattgaacgacaagtctggcgtgcactgagctagacagtaaagcgtttgagattcagaa |
22132216 |
T |
|
| Q |
101 |
atctgtttttctatcgtggcaaacttcgtgtccttgtcaccagtaagtggacccgctgctttctctgcagttttattcatcgtcgaaaacaatataggca |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22132217 |
atctgtttttctatcgtggcaaacttcgtgtccttgtcaccagtaagtggacccgctgctttctctgcagttttattcatcgtcgaaaacaatataggca |
22132316 |
T |
|
| Q |
201 |
tgaagctttttgtgttagatac |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
22132317 |
tgaagctttttgtgttagatac |
22132338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 216
Target Start/End: Original strand, 20086223 - 20086435
Alignment:
| Q |
4 |
aagtttcctaatagcacaaccgaggcaggttctgcaatcattgaacgacaagtctggcgtgcactgagctagacagtaaagcgtttgagattcagaaatc |
103 |
Q |
| |
|
||||||| |||||||| | ||| ||||||||||||||| | |||||||| |||||||||||||||||||||||||| || ||||||||||||||| |
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|
| T |
20086223 |
aagtttctcaatagcactattgagacaggttctgcaatcaccgggtgacaagtccggcgtgcactgagctagacagtaaagggtctgagattcagaaatc |
20086322 |
T |
|
| Q |
104 |
tgtttttctatcgtggcaaacttcgtgtccttgtcaccagtaagtggacccgctgctttctctgcagttttattcatcgtcgaaaacaatataggcatga |
203 |
Q |
| |
|
| |||| | |||||||||||| ||| |||||| |||||||||||| ||||||| |||||||||||||| ||||||||||||||||| |||||||| |
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| T |
20086323 |
cttgcttcttttgtggcaaacttcttgttgttgtcagtagtaagtggacctgctgcttcctctgcagttttatccatcgtcgaaaacaataaaggcatga |
20086422 |
T |
|
| Q |
204 |
agctttttgtgtt |
216 |
Q |
| |
|
|||||| |||||| |
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|
| T |
20086423 |
agctttctgtgtt |
20086435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 29 - 216
Target Start/End: Complemental strand, 22204915 - 22204731
Alignment:
| Q |
29 |
caggttctgcaatcattgaacgacaagtctggcgtgcactgagctagacagtaaagcgtttgagattcagaaatctgtttttctatcgtggcaaacttcg |
128 |
Q |
| |
|
||||||||||||||| | |||||||| ||||||||||||||||| |||||||| || |||||||||||||||| | |||| | |||||||| ||| |
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|
| T |
22204915 |
caggttctgcaatcaccgggtgacaagtccggcgtgcactgagctaggcagtaaagggtctgagattcagaaatctttgcttcttttgtggcaaatttct |
22204816 |
T |
|
| Q |
129 |
tgtccttgtcaccagtaagtggacccgctgctttctctgcagttttattcatcgtcgaaaacaatataggcatgaagctttttgtgtt |
216 |
Q |
| |
|
||| ||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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|
| T |
22204815 |
tgt---tgtcagcagtaagtggacctgctgcttcctctgcagttttattcatcgtcgaaaacaataaaggcatgaagctttctgtgtt |
22204731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 24385016 - 24384936
Alignment:
| Q |
141 |
cagtaagtggacccgctgctttctctgcagttttattcatcgtcgaaaacaatataggcatgaagctttttgtgttagata |
221 |
Q |
| |
|
||||||||||||| |||||| |||||||||| ||||||| |||||||| |||| || ||||||||||||||||||||||| |
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| T |
24385016 |
cagtaagtggacctactgcttcctctgcagttatattcattgtcgaaaataataaagccatgaagctttttgtgttagata |
24384936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 20205552 - 20205623
Alignment:
| Q |
13 |
aatagcacaaccgaggcaggttctgcaatcattgaacgacaagtctggcgtgcactgagctagacagtaaag |
84 |
Q |
| |
|
|||||||| || ||| ||||||||||||||||| |||||| || |||||||||||||||||||||||||| |
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| T |
20205552 |
aatagcactactgagacaggttctgcaatcattaggcgacaaatccggcgtgcactgagctagacagtaaag |
20205623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 22099575 - 22099646
Alignment:
| Q |
13 |
aatagcacaaccgaggcaggttctgcaatcattgaacgacaagtctggcgtgcactgagctagacagtaaag |
84 |
Q |
| |
|
|||||||| || ||| ||||||||||||||||| |||||| || |||||||||||||||||||||||||| |
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| T |
22099575 |
aatagcactactgagacaggttctgcaatcattaggcgacaaatccggcgtgcactgagctagacagtaaag |
22099646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 24385128 - 24385070
Alignment:
| Q |
29 |
caggttctgcaatcattgaacgacaagtctggcgtgcactgagctagacagtaaagcgt |
87 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| | |||||||||| |
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|
| T |
24385128 |
caggttctgcaatcattaggggacaagtctggcgtgcactgagctaaatagtaaagcgt |
24385070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 47723 - 47689
Alignment:
| Q |
50 |
gacaagtctggcgtgcactgagctagacagtaaag |
84 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
47723 |
gacaagtctggcgtgcactgagctagacagtaaag |
47689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 81
Target Start/End: Original strand, 16218 - 16249
Alignment:
| Q |
50 |
gacaagtctggcgtgcactgagctagacagta |
81 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
16218 |
gacaagtctggcgtgcactgagctagacagta |
16249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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