View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6391_low_2 (Length: 365)

Name: NF6391_low_2
Description: NF6391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6391_low_2
NF6391_low_2
[»] chr1 (36 HSPs)
chr1 (17-365)||(32882403-32882745)
chr1 (77-365)||(34774961-34775250)
chr1 (77-361)||(27102281-27102556)
chr1 (81-362)||(10785167-10785447)
chr1 (77-349)||(31290740-31291010)
chr1 (78-306)||(16577352-16577579)
chr1 (148-360)||(46768343-46768549)
chr1 (77-167)||(6583117-6583207)
chr1 (79-221)||(27031687-27031827)
chr1 (201-365)||(16148990-16149154)
chr1 (79-226)||(7857747-7857893)
chr1 (79-226)||(24659023-24659168)
chr1 (77-171)||(16147648-16147742)
chr1 (208-359)||(32863255-32863406)
chr1 (81-181)||(41126362-41126462)
chr1 (77-198)||(9313179-9313298)
chr1 (17-66)||(32879539-32879588)
chr1 (79-288)||(46814246-46814454)
chr1 (113-193)||(52278430-52278509)
chr1 (145-259)||(46692627-46692739)
chr1 (113-259)||(5459289-5459434)
chr1 (170-357)||(11439731-11439919)
chr1 (145-259)||(24449738-24449850)
chr1 (146-259)||(5389230-5389340)
chr1 (321-365)||(9313043-9313087)
chr1 (266-365)||(2987825-2987924)
chr1 (264-351)||(6582968-6583055)
chr1 (292-365)||(52278589-52278660)
chr1 (146-259)||(41920619-41920730)
chr1 (325-365)||(376509-376549)
chr1 (260-358)||(46603636-46603732)
chr1 (208-299)||(38548845-38548934)
chr1 (329-364)||(42374526-42374561)
chr1 (317-359)||(38544425-38544467)
chr1 (184-312)||(38544511-38544637)
chr1 (208-248)||(24684310-24684350)
[»] chr2 (31 HSPs)
chr2 (78-358)||(10173289-10173567)
chr2 (77-360)||(7696052-7696334)
chr2 (77-359)||(37770359-37770633)
chr2 (78-296)||(16952154-16952372)
chr2 (78-296)||(17022819-17023037)
chr2 (78-296)||(17060125-17060343)
chr2 (77-362)||(34230291-34230576)
chr2 (79-284)||(14106305-14106509)
chr2 (81-288)||(5254352-5254553)
chr2 (79-288)||(387268-387476)
chr2 (77-295)||(1269573-1269787)
chr2 (82-279)||(7874388-7874583)
chr2 (159-313)||(12342992-12343144)
chr2 (79-259)||(39338674-39338853)
chr2 (232-365)||(4974990-4975123)
chr2 (232-365)||(4992898-4993031)
chr2 (145-284)||(7460836-7460974)
chr2 (80-285)||(41086572-41086785)
chr2 (145-252)||(17116694-17116800)
chr2 (113-259)||(10524228-10524373)
chr2 (77-140)||(13337364-13337427)
chr2 (215-358)||(41113450-41113590)
chr2 (301-365)||(13337565-13337628)
chr2 (79-228)||(14405292-14405441)
chr2 (206-365)||(29139653-29139813)
chr2 (301-359)||(41086513-41086570)
chr2 (330-365)||(22884817-22884852)
chr2 (331-365)||(33788328-33788362)
chr2 (317-361)||(2063208-2063253)
chr2 (256-365)||(29997215-29997323)
chr2 (321-365)||(4472277-4472321)
[»] chr7 (32 HSPs)
chr7 (77-346)||(24324520-24324788)
chr7 (78-365)||(3478443-3478727)
chr7 (77-237)||(8745243-8745405)
chr7 (77-361)||(6716443-6716727)
chr7 (77-362)||(1320885-1321169)
chr7 (79-226)||(34390056-34390202)
chr7 (79-259)||(47325693-47325873)
chr7 (206-356)||(33719185-33719334)
chr7 (79-288)||(35745601-35745813)
chr7 (78-312)||(23983298-23983530)
chr7 (77-365)||(42532962-42533244)
chr7 (79-288)||(44353345-44353552)
chr7 (145-259)||(31971942-31972054)
chr7 (252-346)||(6492852-6492946)
chr7 (146-259)||(38306423-38306534)
chr7 (146-288)||(3867278-3867415)
chr7 (79-259)||(5860096-5860276)
chr7 (146-222)||(6585043-6585118)
chr7 (261-363)||(16828805-16828906)
chr7 (272-365)||(16954775-16954867)
chr7 (74-127)||(36449171-36449224)
chr7 (79-214)||(33435203-33435337)
chr7 (260-319)||(28534277-28534336)
chr7 (332-365)||(28534207-28534240)
chr7 (79-252)||(37795082-37795255)
chr7 (77-127)||(44755679-44755729)
chr7 (321-362)||(26385863-26385903)
chr7 (78-127)||(48058595-48058644)
chr7 (326-362)||(8745469-8745504)
chr7 (330-358)||(13312180-13312208)
chr7 (321-360)||(25438691-25438731)
chr7 (79-123)||(41089691-41089735)
[»] scaffold0050 (1 HSPs)
scaffold0050 (77-358)||(36799-37078)
[»] scaffold0063 (1 HSPs)
scaffold0063 (77-365)||(58217-58506)
[»] chr5 (31 HSPs)
chr5 (77-365)||(26045666-26045955)
chr5 (138-365)||(13953951-13954178)
chr5 (77-354)||(8297558-8297838)
chr5 (77-362)||(14302150-14302421)
chr5 (93-365)||(26405251-26405520)
chr5 (247-362)||(30097593-30097708)
chr5 (146-288)||(7161795-7161935)
chr5 (181-365)||(7682747-7682931)
chr5 (77-265)||(33258682-33258873)
chr5 (77-365)||(25992097-25992379)
chr5 (81-198)||(7195112-7195227)
chr5 (151-333)||(21398054-21398236)
chr5 (254-355)||(7195014-7195114)
chr5 (229-359)||(10174923-10175051)
chr5 (312-364)||(24071965-24072017)
chr5 (215-355)||(33109913-33110050)
chr5 (77-167)||(7391937-7392028)
chr5 (145-259)||(18593404-18593516)
chr5 (77-155)||(21402749-21402828)
chr5 (147-358)||(7391709-7391917)
chr5 (79-259)||(29087575-29087752)
chr5 (264-365)||(31721950-31722049)
chr5 (327-365)||(31742504-31742542)
chr5 (145-247)||(34378259-34378359)
chr5 (231-284)||(5656878-5656931)
chr5 (145-236)||(698522-698611)
chr5 (206-288)||(18313425-18313504)
chr5 (290-358)||(37108103-37108170)
chr5 (78-125)||(39024385-39024432)
chr5 (333-361)||(23426646-23426674)
chr5 (321-365)||(33258592-33258636)
[»] chr8 (28 HSPs)
chr8 (138-365)||(10248268-10248497)
chr8 (78-365)||(12197778-12198058)
chr8 (78-365)||(12442206-12442486)
chr8 (77-198)||(17656873-17656993)
chr8 (201-365)||(17656439-17656603)
chr8 (79-250)||(38577606-38577777)
chr8 (146-332)||(43312375-43312558)
chr8 (79-288)||(20138519-20138726)
chr8 (81-252)||(31207177-31207348)
chr8 (210-365)||(8862324-8862481)
chr8 (79-247)||(35816066-35816230)
chr8 (145-259)||(41893210-41893322)
chr8 (79-259)||(37986666-37986846)
chr8 (132-222)||(15821224-15821313)
chr8 (266-359)||(41790977-41791070)
chr8 (113-250)||(9519627-9519764)
chr8 (106-164)||(8862505-8862563)
chr8 (264-310)||(30235889-30235935)
chr8 (113-259)||(24995202-24995348)
chr8 (77-127)||(10248494-10248544)
chr8 (232-338)||(22325826-22325931)
chr8 (146-252)||(34388822-34388925)
chr8 (145-222)||(12898120-12898195)
chr8 (206-259)||(16457283-16457336)
chr8 (78-127)||(17720647-17720696)
chr8 (201-288)||(36631039-36631123)
chr8 (317-365)||(5221506-5221553)
chr8 (327-363)||(10552609-10552645)
[»] chr4 (29 HSPs)
chr4 (77-359)||(41117677-41117958)
chr4 (77-294)||(48098423-48098641)
chr4 (96-365)||(19311069-19311346)
chr4 (77-365)||(16832723-16833012)
chr4 (77-365)||(38636937-38637224)
chr4 (79-250)||(31050478-31050648)
chr4 (78-358)||(19814928-19815210)
chr4 (77-313)||(25753262-25753500)
chr4 (79-266)||(35341141-35341325)
chr4 (78-265)||(19673191-19673377)
chr4 (116-359)||(49747657-49747900)
chr4 (77-198)||(49528162-49528282)
chr4 (79-224)||(2825877-2826020)
chr4 (77-299)||(22810929-22811151)
chr4 (207-359)||(39420745-39420896)
chr4 (81-167)||(39420914-39421000)
chr4 (77-174)||(53823314-53823412)
chr4 (77-129)||(2061677-2061729)
chr4 (79-258)||(8255120-8255299)
chr4 (79-258)||(8268538-8268717)
chr4 (206-339)||(53823151-53823281)
chr4 (321-365)||(28967209-28967253)
chr4 (264-310)||(43373864-43373910)
chr4 (326-358)||(48098645-48098677)
chr4 (148-259)||(8705952-8706061)
chr4 (273-358)||(2061542-2061627)
chr4 (192-265)||(20464796-20464869)
chr4 (310-363)||(25754199-25754251)
chr4 (171-251)||(30964624-30964702)
[»] chr3 (44 HSPs)
chr3 (77-257)||(14879526-14879708)
chr3 (79-250)||(23328167-23328337)
chr3 (88-308)||(37123482-37123703)
chr3 (77-363)||(28937427-28937705)
chr3 (97-365)||(4170855-4171122)
chr3 (79-250)||(45398890-45399060)
chr3 (107-359)||(50518798-50519047)
chr3 (79-250)||(40023389-40023559)
chr3 (79-288)||(43012469-43012677)
chr3 (80-285)||(7104936-7105140)
chr3 (77-365)||(25647776-25648061)
chr3 (78-250)||(39021094-39021267)
chr3 (206-361)||(48893060-48893214)
chr3 (79-258)||(20611876-20612054)
chr3 (79-288)||(53247993-53248200)
chr3 (79-259)||(47235791-47235971)
chr3 (77-166)||(14755166-14755255)
chr3 (79-288)||(19176596-19176806)
chr3 (206-357)||(14194154-14194300)
chr3 (79-259)||(34475564-34475742)
chr3 (79-252)||(2392321-2392494)
chr3 (208-312)||(25594304-25594406)
chr3 (147-270)||(9583852-9583972)
chr3 (77-357)||(33143663-33143939)
chr3 (272-365)||(14280252-14280343)
chr3 (321-362)||(14893264-14893305)
chr3 (292-357)||(41039463-41039527)
chr3 (145-252)||(2394085-2394190)
chr3 (228-360)||(12086483-12086615)
chr3 (79-183)||(21342629-21342733)
chr3 (145-259)||(30352249-30352359)
chr3 (93-163)||(14194040-14194109)
chr3 (78-126)||(46358328-46358376)
chr3 (267-310)||(1652648-1652691)
chr3 (145-224)||(17551113-17551190)
chr3 (79-222)||(31482977-31483119)
chr3 (315-358)||(46358092-46358135)
chr3 (315-365)||(1652579-1652628)
chr3 (321-359)||(25594217-25594255)
chr3 (317-359)||(32010117-32010159)
chr3 (102-258)||(37998971-37999125)
chr3 (252-297)||(32010027-32010072)
chr3 (113-257)||(45163983-45164126)
chr3 (260-312)||(27399218-27399270)
[»] scaffold0200 (1 HSPs)
scaffold0200 (77-295)||(19473-19687)
[»] chr6 (11 HSPs)
chr6 (77-365)||(20701500-20701794)
chr6 (77-259)||(3880404-3880589)
chr6 (77-359)||(15120311-15120588)
chr6 (138-247)||(13423603-13423716)
chr6 (315-365)||(17278165-17278215)
chr6 (102-311)||(32935099-32935305)
chr6 (145-259)||(10541993-10542105)
chr6 (145-252)||(14663238-14663343)
chr6 (303-362)||(6860348-6860408)
chr6 (78-116)||(20500011-20500049)
chr6 (316-358)||(20500282-20500323)
[»] scaffold0119 (1 HSPs)
scaffold0119 (77-295)||(41915-42129)
[»] scaffold1384 (1 HSPs)
scaffold1384 (201-365)||(1354-1522)
[»] scaffold0343 (1 HSPs)
scaffold0343 (145-265)||(5867-5985)
[»] scaffold1613 (2 HSPs)
scaffold1613 (317-359)||(704-746)
scaffold1613 (184-312)||(790-916)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 365
Target Start/End: Original strand, 32882403 - 32882745
Alignment:
Q  17 actaaatttcatgaaaaaatatattctctttctcctttttcaaatcattannnnnnnggttttctttcggtggattggaggtcgagaggtggtggaagct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||| || |||| |||| |||||||| |||||    
T  32882403 actaaatttcatgaaaaaatatattctctttctcctttttcaaatcattatttttttggttttctttcggtgaatcggagatcgacaggtggtgaaagct 32882502  T
Q  117 gaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtgg-tgagtagt 215  Q
     ||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||| || ||||||||    
T  32882503 taatgatctttcggtcaggagcttttcgaatgtggctcagctttggtgttgaggactgggg-------ttttgaggggtgttcgttggggggtgagtagt 32882595  T
Q  216 gacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagag 315  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| | |    
T  32882596 gacgatgggtggtgttggatatcgtgtttacagtgctcgttttcgtgaaggagtcagttttaggcggtgatgtatattttggtgggtgttgtcctcgggg 32882695  T
Q  316 gtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32882696 gtgtcttttagggtgtttattttcgggtgttctgcctatatacggcgcct 32882745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 77 - 365
Target Start/End: Original strand, 34774961 - 34775250
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatc-tttcagctaggagcttttc-gaatgtggctcagctttggtgttgaggactg 174  Q
    |||||||||||| ||||||||| ||||||||||||||||||| ||||  |||||| |||||| ||||| | |||||||||||||||||||||||||| ||    
T  34774961 tttctttcggtgaattggaggttgagaggtggtggaagctgattgattgtttcagataggagtttttccggatgtggctcagctttggtgttgaggattg 34775060  T
Q  175 ggagttttaattttgaggggtgtt-cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagt 273  Q
    ||||||| | |||| | ||||||| | |||| ||||||||||||||| ||||  ||| |||| |||| ||||||||  ||||||| ||||||||||| ||    
T  34775061 ggagttt-attttttacgggtgtttcattgg-ggtgagtagtgacgacgggtagtgtgggatttcgtttttacagttgtcgttttcgtgaaggagtctgt 34775158  T
Q  274 tttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
    |||||| | ||| || |||||||||| ||||||||||||  ||| | ||||| |||||||||||||||||||||||||||||||||||||||    
T  34775159 tttaggtgatgacgtgtattttggtgggtgttgtcctcattggtattttttaaggtgtttattttcgggtgttccgcctatatacggcgcct 34775250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 77 - 361
Target Start/End: Original strand, 27102281 - 27102556
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 176  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||  |||||||||||||| ||||| |||| ||||    
T  27102281 tttctttcggtggatcggaggtcgagaggtggtggaagctgaatgatctttcagataggagcgtttcg-ttgtggctcagctttagtgttcaggaatggg 27102379  T
Q  177 agttttaattttgagggg----tgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcag 272  Q
    | ||  | ||||||||||    | ||| |||| ||||||||||||||||| ||| |||||||| |||| |||||||||   ||||| ||||| |  || |    
T  27102380 atttggatttttgaggggtattttttctttgg-ggtgagtagtgacgatgagtggtgttggatttcgtttttacagtggctgttttcgtgaaagtatctg 27102478  T
Q  273 ttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggc 361  Q
    ||||||| |         ||||||||| ||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||    
T  27102479 ttttagggg---------attttggtgggtgttgtcctca-tggtgt-ttttagggtgtttattttcgggtgttccgcctatatacggc 27102556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 81 - 362
Target Start/End: Complemental strand, 10785447 - 10785167
Alignment:
Q  81 tttcggtggattggaggtcgagaggtggtggaagctgaatgatctt-tcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagt 179  Q
    ||||||||| | |||||||| |||||||||||||||||||||| || || | |||||||||||||  || ||||| |||||||| | |||||||| |||     
T  10785447 tttcggtggttcggaggtcgcgaggtggtggaagctgaatgattttctctgataggagcttttcgggtgcggctctgctttggtatcgaggactgagag- 10785349  T
Q  180 tttaattttgaggggtgttcgttg-gtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttag 278  Q
    |||| ||||||||||||||  ||| | | |||||||||||||||||||  |||||||||||| ||| |||   ||||||| ||||||||||| ||||||     
T  10785348 tttatttttgaggggtgtttcttgcgggatgagtagtgacgatgggtg--gttggatatcgttttttcagatgtcgttttcgtgaaggagtctgttttaa 10785251  T
Q  279 gcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcg 362  Q
    | | | |  | ||||||| || ||||||||||||  ||||| ||||| ||||||||| || |||||||||| || | |||||||    
T  10785250 gtgataacatgtattttgatgggtgttgtcctcaagggtgttttttaaggtgtttatatttgggtgttccgactttgtacggcg 10785167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 77 - 349
Target Start/End: Complemental strand, 31291010 - 31290740
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 176  Q
    ||||||||||||||| |||||||||||||||||||||| ||  ||||||||| | ||||||||||||| |||||||||||||||||||||   || || |    
T  31291010 tttctttcggtggatcggaggtcgagaggtggtggaagttgcttgatctttcggataggagcttttcggatgtggctcagctttggtgttctaga-tgag 31290912  T
Q  177 agttttaattttgaggggtg---ttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagt 273  Q
       |||| |||| |||||||   ||| |||  |||||||||||||||||| ||  ||||| |||| | ||||||||| ||||||| | ||||||||| |     
T  31290911 ccgtttattttttaggggtgtttttctttgagggtgagtagtgacgatggatg--gttggctatcatttttacagtggtcgttttcgcgaaggagtctga 31290814  T
Q  274 tttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccg 349  Q
    |||||| |||||||| || | ||  | |  |||||||||| ||||| ||||| |||||||||||||||||||||||    
T  31290813 tttaggtggtgatgtgta-tatgaagggaattgtcctcaggggtgt-ttttatggtgtttattttcgggtgttccg 31290740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 78 - 306
Target Start/End: Original strand, 16577352 - 16577579
Alignment:
Q  78 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggga 177  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||    ||||||||||||| |||||||||| |||||||| ||  |||||  |    
T  16577352 ttctttcggtagattggaggttgagaggtggtggaagctgaatgatctttggaataggagcttttcggatgtggctcaactttggtgatggtgactgaaa 16577451  T
Q  178 gttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagtttta 277  Q
    | |||  ||| ||||||||||| || |  |||||||| |||||||  || |  |||||||| | |||  |||| ||||||| ||||| ||||| ||||||    
T  16577452 g-tttcttttagaggggtgttcttttggagtgagtagggacgatgaatggttatggatatcattttttgagtggtcgttttcgtgaaagagtctgtttta 16577550  T
Q  278 ggcggtgatgtatattttggtgagtgttg 306  Q
    || | |||||| |||||||||| ||||||    
T  16577551 ggtgatgatgtttattttggtgggtgttg 16577579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 148 - 360
Target Start/End: Original strand, 46768343 - 46768549
Alignment:
Q  148 gtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt---cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 244  Q
    |||||| |||||||||||| |||| ||||||||| | | ||||||| | ||   | |||| |||||||||||||||||||   ||||||||||||         
T  46768343 gtggcttagctttggtgttcaggattgggagttt-agtcttgagggttttttttctttgggggtgagtagtgacgatgggcagtgttggatatcg----- 46768436  T
Q  245 acagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtg 344  Q
       ||| ||||||| ||||||||||| |||||||| ||||| ||  ||||||||| ||||||||||| | ||||| ||||||||||||||||||||||||    
T  46768437 ---gtggtcgttttcgtgaaggagtctgttttaggtggtgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtg 46768533  T
Q  345 ttccgcctatatacgg 360  Q
    ||||||||| ||||||    
T  46768534 ttccgcctacatacgg 46768549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 77 - 167
Target Start/End: Complemental strand, 6583207 - 6583117
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttg 167  Q
    |||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||| ||||||||||||||||||    
T  6583207 tttctttcggtgaatcggaggtcgagaggtggtggaagctgattgatctttcagataggagcttttcggatgcggctcagctttggtgttg 6583117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 79 - 221
Target Start/End: Complemental strand, 27031827 - 27031687
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 178  Q
    ||||||||||||| |||||| ||||||| |||||||||| ||| || ||| | || |||||||||||||||||||||| || | |||||| | |||||||    
T  27031827 tctttcggtggatcggaggttgagaggttgtggaagctgcatgttcattcggttaagagcttttcgaatgtggctcagtttggatgttgaagtctgggag 27031728  T
Q  179 ttttaattttgaggggtgttcgttggtggtgagtagtgacgat 221  Q
    |||| ||||||||||||||||  ||| ||||||||||||||||    
T  27031727 tttt-attttgaggggtgttctctgg-ggtgagtagtgacgat 27031687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 201 - 365
Target Start/End: Original strand, 16148990 - 16149154
Alignment:
Q  201 ttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtga 300  Q
    |||| ||||||||||||||||||||| | ||||||||||| ||| ||||  ||||||   |||||| ||| |||||||| ||||| || |||||| | |     
T  16148990 ttgggggtgagtagtgacgatgggtgcttttggatatcgttttt-cagtagtcgtttacatgaaggtgtctgttttaggtggtgacgtgtattttagcgg 16149088  T
Q  301 g-tgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
    | | |||||||||  | |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16149089 gcttttgtcctcaaggttgtcttttagggtgtttattttcgcgtgttccgcctatatacggcgcct 16149154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 79 - 226
Target Start/End: Original strand, 7857747 - 7857893
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 178  Q
    ||||||||||||| || ||||||||||| ||||||||||  ||  | ||| | |||||||||||  |||||||||||| || |||||||| | |||||||    
T  7857747 tctttcggtggatcggtggtcgagaggttgtggaagctgcttgtccattcggttaggagcttttgaaatgtggctcagtttgggtgttgaagtctgggag 7857846  T
Q  179 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtg 226  Q
    |||| ||||||||||||||||  ||| ||||||||||| |||||||||    
T  7857847 tttt-attttgaggggtgttctatgggggtgagtagtggcgatgggtg 7857893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 79 - 226
Target Start/End: Original strand, 24659023 - 24659168
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 178  Q
    ||||||||||||| |||||||||||||| ||||||||   ||| || ||| | ||| |||||||||||||||||||||| | || ||| ||  |||||||    
T  24659023 tctttcggtggatcggaggtcgagaggttgtggaagcatcatgttcattcggttagaagcttttcgaatgtggctcagcctgggagttaagt-ctgggag 24659121  T
Q  179 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtg 226  Q
    ||||| ||||||||||||||  |||| |||||||||||||||||||||    
T  24659122 tttta-ttttgaggggtgttatttgggggtgagtagtgacgatgggtg 24659168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 77 - 171
Target Start/End: Original strand, 16147648 - 16147742
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgagga 171  Q
    ||||||||||| ||| |||||| ||||||||||| ||| ||||||||||||||| || |||||||||| |||||||||||||||||||| |||||    
T  16147648 tttctttcggtagatcggaggtggagaggtggtgaaagttgaatgatctttcagatatgagcttttcggatgtggctcagctttggtgtagagga 16147742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 208 - 359
Target Start/End: Complemental strand, 32863406 - 32863255
Alignment:
Q  208 tgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgt 307  Q
    ||||| ||||||||| ||| ||   ||||||||||||||| || ||||||| ||| |||| || |||||||||||||| || ||| |||||| |||||||    
T  32863406 tgagttgtgacgatgagtggtgcgagatatcgtgtttacaatggtcgttttcgtggaggattctgttttaggcggtgacgtgtatgttggtgggtgttgt 32863307  T
Q  308 cctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacg 359  Q
    ||||   ||||| |||   ||||||||||||| |||||||||||||||||||    
T  32863306 cctcttgggtgtttttcttggtgtttattttcaggtgttccgcctatatacg 32863255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 41126462 - 41126362
Alignment:
Q  81 tttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagtt 180  Q
    |||||||||||||||||| |||||||| ||||||||||| |||||||  | ||||||||||||  |||||| ||| |||||||| ||||||||| |||||    
T  41126462 tttcggtggattggaggttgagaggtgctggaagctgaacgatcttttggataggagcttttcagatgtggatcaactttggtgatgaggactgagagtt 41126363  T
Q  181 t 181  Q
    |    
T  41126362 t 41126362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 198
Target Start/End: Complemental strand, 9313298 - 9313179
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 176  Q
    ||||||||||||||| |||||| || ||||||||| || || |||||| ||||  || ||| |||||| |||||||||||||||||| || |||||||||    
T  9313298 tttctttcggtggatcggaggtggataggtggtggcagttgtatgatccttcaaatacgagtttttcggatgtggctcagctttggt-ttcaggactggg 9313200  T
Q  177 agttttaattttgaggggtgtt 198  Q
    || ||||||||||| |||||||    
T  9313199 ag-tttaattttgaagggtgtt 9313179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 32879539 - 32879588
Alignment:
Q  17 actaaatttcatgaaaaaatatattctctttctcctttttcaaatcatta 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32879539 actaaatttcatgaaaaaatatattctctttctcctttttcaaatcatta 32879588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 288
Target Start/End: Complemental strand, 46814454 - 46814246
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 178  Q
    ||||||||||||| ||| |||||||||| |  ||||||| | | || |||   ||||||||||||||||||||||| || | |||||||| |  ||||||    
T  46814454 tctttcggtggatcggatgtcgagaggttgcagaagctgcaagttcattcgattaggagcttttcgaatgtggctcggcgtgggtgttgaagtatgggag 46814355  T
Q  179 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttag 278  Q
    |||| |||| ||||||||||  |||| ||||||||||||||||||  | |  ||||||  |||||||||| | | |||| ||| |||| ||| || ||||    
T  46814354 tttt-atttcgaggggtgttatttggaggtgagtagtgacgatggacggttgtggatactgtgtttacagggtttgtttctgttaaggtgtctgtcttag 46814256  T
Q  279 gcggtgatgt 288  Q
    | ||||||||    
T  46814255 gtggtgatgt 46814246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 113 - 193
Target Start/End: Original strand, 52278430 - 52278509
Alignment:
Q  113 agctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggg 193  Q
    ||||| |||||||||||| |||||| |||||| |||||||||| ||||| |||||||||||||||| ||||||||||||||    
T  52278430 agctgcatgatctttcagataggagtttttcggatgtggctcaactttgatgttgaggactgggag-tttaattttgaggg 52278509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 259
Target Start/End: Complemental strand, 46692739 - 46692627
Alignment:
Q  145 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 244  Q
    ||||||||||||||| ||||||| || |||| |||||||  ||||  |||||||| |||  ||||||||||||||||||| | || | ||||||||||||    
T  46692739 aatgtggctcagcttgggtgttggggtctggaagtttta--tttggagggtgttctttgtgggtgagtagtgacgatgggcggtggttgatatcgtgttt 46692642  T
Q  245 acagtgctcgttttt 259  Q
    |||||||| ||||||    
T  46692641 acagtgcttgttttt 46692627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 113 - 259
Target Start/End: Original strand, 5459289 - 5459434
Alignment:
Q  113 agctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgag 211  Q
    ||||| |||||| ||||| |||| ||| || ||| ||||||||||||| ||||||| || |||| ||||||| |||||| || ||||| |||  ||||||    
T  5459289 agctgcatgatccttcagttaggtgctctttgaaatgtggctcagcttgggtgttggggtctggaagtttta-ttttgatgg-tgttctttgtgggtgag 5459386  T
Q  212 tagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 259  Q
    ||||||||||||| | || |||||| ||||||||||||| | ||||||    
T  5459387 tagtgacgatgggcggtggtggataccgtgtttacagtgattgttttt 5459434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 357
Target Start/End: Complemental strand, 11439919 - 11439731
Alignment:
Q  170 gactgggagttttaattttgaggggtgtt---cgttggtggtg-agtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaag 265  Q
    |||||||||||| |||| |||||||||||   | |||| |||| ||||||||||||  ||| ||||||||||| | ||||| ||| | | ||| ||||||    
T  11439919 gactgggagttt-aattctgaggggtgtttttctttgggggtggagtagtgacgataagtggtgttggatatcatttttacggtggttgctttcgtgaag 11439821  T
Q  266 gagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatata 357  Q
    |  || |||||||| ||||| || ||||||||||  ||||||| |||| ||  |  |||||||||||||||||||| ||||||| |||||||    
T  11439820 ggatctgttttaggtggtgacgtgtattttggtggatgttgtcttcagggggat--tttagggtgtttattttcggatgttccgtctatata 11439731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 259
Target Start/End: Complemental strand, 24449850 - 24449738
Alignment:
Q  145 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 244  Q
    |||| |||||||||| ||||||| || || ||||||||| ||||||||| ||||  |||  ||||||||||||||||||| | || |||||| |||||||    
T  24449850 aatgcggctcagcttgggtgttggggtctaggagtttta-ttttgaggg-tgttatttgtgggtgagtagtgacgatgggcggtggtggataccgtgttt 24449753  T
Q  245 acagtgctcgttttt 259  Q
    |||||||| ||||||    
T  24449752 acagtgcttgttttt 24449738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 146 - 259
Target Start/End: Complemental strand, 5389340 - 5389230
Alignment:
Q  146 atgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttta 245  Q
    |||||||||||||| ||||||| || |||||||||||| ||||||||| ||||| |||   |||||||||||||||||| | || |||||| ||||||||    
T  5389340 atgtggctcagcttgggtgttggggtctgggagtttta-ttttgaggg-tgttc-ttgtaagtgagtagtgacgatgggcggtggtggataccgtgttta 5389244  T
Q  246 cagtgctcgttttt 259  Q
    | ||||| ||||||    
T  5389243 cggtgcttgttttt 5389230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 321 - 365
Target Start/End: Complemental strand, 9313087 - 9313043
Alignment:
Q  321 ttttagggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  9313087 ttttagggtgtttattttcgggtgttccgcctatatacgacgcct 9313043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 365
Target Start/End: Complemental strand, 2987924 - 2987825
Alignment:
Q  266 gagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
    |||||||||||||  |||||||| |||||||||| ||||||    ||| ||||| |||   ||||||| ||||||| |||||||||||||||||||||||    
T  2987924 gagtcagttttagtgggtgatgtttattttggtgggtgttgattgcaggggtgtttttgttggtgtttgttttcggatgttccgcctatatacggcgcct 2987825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 351
Target Start/End: Complemental strand, 6583055 - 6582968
Alignment:
Q  264 aggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcc 351  Q
    ||||||| |||||||| ||||| || |||||||||| ||||| || |||   |||| ||||| |||||||||||||||||||||||||    
T  6583055 aggagtctgttttaggtggtgacgtgtattttggtgggtgttatcatcatgagtgttttttatggtgtttattttcgggtgttccgcc 6582968  T

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Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 365
Target Start/End: Original strand, 52278589 - 52278660
Alignment:
Q  292 ttttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
    |||||||| ||||||||||| | ||||||||| ||| ||||||||||| ||||||||||||||||| |||||||    
T  52278589 ttttggtgggtgttgtcctc-gtggtgtctttaagg-tgtttattttcaggtgttccgcctatatatggcgcct 52278660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 146 - 259
Target Start/End: Original strand, 41920619 - 41920730
Alignment:
Q  146 atgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttta 245  Q
    |||||||||||||| ||||||| || || |||||||| ||||||| |||||||  |||  |||||||||||||||| || | || || ||| ||||||||    
T  41920619 atgtggctcagcttgggtgttggggtcttggagtttt-attttga-gggtgttttttgtgggtgagtagtgacgataggcggtggtgaataccgtgttta 41920716  T
Q  246 cagtgctcgttttt 259  Q
    || |||| ||||||    
T  41920717 cattgcttgttttt 41920730  T

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Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 365
Target Start/End: Complemental strand, 376549 - 376509
Alignment:
Q  325 agggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
    ||||||||||||||| ||||||| |||||||||||||||||    
T  376549 agggtgtttattttcaggtgttctgcctatatacggcgcct 376509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 358
Target Start/End: Original strand, 46603636 - 46603732
Alignment:
Q  260 gtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgttt-attttcgggtgttccgcctatatac 358  Q
    |||||| |||| |||||||  |||||| | |||||||||| |||||||| |||| |||  |||||| | ||||| |||||||||||||||||||||||||    
T  46603636 gtgaagaagtctgttttagatggtgattt-tattttggtgggtgttgtcttcaggggt--cttttatgatgttttattttcgggtgttccgcctatatac 46603732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 299
Target Start/End: Complemental strand, 38548934 - 38548845
Alignment:
Q  208 tgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtg 299  Q
    ||||||||||||||||||| |  || ||||||| ||| ||||| ||| ||| ||||| ||||| |||||||| |||||||| ||||||||||    
T  38548934 tgagtagtgacgatgggtggttatgaatatcgt-ttttcagtgatcg-tttcgtgaaagagtctgttttaggtggtgatgtttattttggtg 38548845  T

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Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 329 - 364
Target Start/End: Original strand, 42374526 - 42374561
Alignment:
Q  329 tgtttattttcgggtgttccgcctatatacggcgcc 364  Q
    ||||||||||||||||||||||||||||| ||||||    
T  42374526 tgtttattttcgggtgttccgcctatatatggcgcc 42374561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 359
Target Start/End: Complemental strand, 38544467 - 38544425
Alignment:
Q  317 tgtcttttagggtgtttattttcgggtgttccgcctatatacg 359  Q
    ||||||||| |||||||||||||||||||||| | ||||||||    
T  38544467 tgtcttttatggtgtttattttcgggtgttccacatatatacg 38544425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 312
Target Start/End: Complemental strand, 38544637 - 38544511
Alignment:
Q  184 attttgaggggtgtt-cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcgg 282  Q
    |||| |||||||||| |||||| | ||||||||||||||| ||| |  |||||||||| ||| ||||| || ||   ||||| ||||| |||||||| ||    
T  38544637 atttagaggggtgttacgttgg-gatgagtagtgacgatgagtggttatggatatcgt-tttccagtgatcattcc-gtgaaagagtctgttttaggtgg 38544541  T
Q  283 tgatgtatattttggtgagtgttgtcctca 312  Q
    |||||| ||||||||||  |||||||||||    
T  38544540 tgatgtttattttggtgtatgttgtcctca 38544511  T

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Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 24684350 - 24684310
Alignment:
Q  208 tgagtagtgacgatgggtgatgttggatatcgtgtttacag 248  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  24684350 tgagtagtgacgatgggcggtggtggatatcgtgtttacag 24684310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 78 - 358
Target Start/End: Complemental strand, 10173567 - 10173289
Alignment:
Q  78 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggga 177  Q
    ||||||||||| || |||||||||||||||||||||| ||||||||||||    || |||||||||| ||||||||||||||||||||||||||||| ||    
T  10173567 ttctttcggtgaatcggaggtcgagaggtggtggaagttgaatgatcttttgaatatgagcttttcggatgtggctcagctttggtgttgaggactgaga 10173468  T
Q  178 gttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagtttta 277  Q
    |||| |||||||||| || ||| |||| ||||||||||||||||| ||| ||||| ||||||| ||||||||  |||||||  |||||  ||| ||||||    
T  10173467 gttt-aattttgaggagtattctttgg-ggtgagtagtgacgatgagtggtgttgtatatcgtttttacagtagtcgttttcatgaagacgtctgtttta 10173370  T
Q  278 ggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatac 358  Q
    ||| ||||  | ||||||| || || |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  10173369 ggccgtgacatgtattttgatgggtattgtcctcagaggtatcttttagggtgtttattttcaggtgttccgcctatatac 10173289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 77 - 360
Target Start/End: Original strand, 7696052 - 7696334
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 176  Q
    ||||||||||||||| | |||||| ||||||||||||||||||||||||||| | |||||| |||  | |||||||||| |||||||||| |||||  ||    
T  7696052 tttctttcggtggatcgaaggtcgggaggtggtggaagctgaatgatctttcggataggagatttgaggatgtggctcaactttggtgttcaggaccagg 7696151  T
Q  177 agttttaattttgaggggtgttcgtt---ggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagt 273  Q
    ||||||| |||| |||||||||  |    ||  |||||||||||||||| |||  |||| ||||| | |||||| || ||||||| ||||||||||   |    
T  7696152 agttttattttt-aggggtgtttttctaagggagtgagtagtgacgatgagtg--gttgaatatcatttttacattggtcgttttcgtgaaggagtttat 7696248  T
Q  274 tttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacgg 360  Q
    |||||| |||||||| |||||||||| ||||||||||| | ||||| ||||| |||||||||||| |||||||||||||||||||||    
T  7696249 tttaggtggtgatgtgtattttggtgggtgttgtcctcgggggtgt-ttttaaggtgtttatttttgggtgttccgcctatatacgg 7696334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 77 - 359
Target Start/End: Complemental strand, 37770633 - 37770359
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 176  Q
    |||||||||||| || ||||||||||||||| |||||||||||||||||||||| || |||||||||  | ||||||| ||||||||||| ||| ||| |    
T  37770633 tttctttcggtgaatcggaggtcgagaggtgttggaagctgaatgatctttcagatatgagcttttctgaggtggctcggctttggtgttcaggtctgtg 37770534  T
Q  177 agttttaattttgagggg---tgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagt 273  Q
    || |||||||||||||||   | ||| |||| || |||||||||||| ||||| |||||||        ||| |||| | ||||| ||||||||||| ||    
T  37770533 ag-tttaattttgagggggttttttctttgggggcgagtagtgacgacgggtggtgttgga--------ttatagtggtggttttcgtgaaggagtctgt 37770443  T
Q  274 tttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacg 359  Q
    |||||| ||||| ||  ||||||||| ||| | ||||||  ||||| |||||||||||||||||||||||||||||||||||||||    
T  37770442 tttaggtggtgacgtggattttggtgggtggtatcctca-tggtgt-ttttagggtgtttattttcgggtgttccgcctatatacg 37770359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 78 - 296
Target Start/End: Complemental strand, 16952372 - 16952154
Alignment:
Q  78 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggga 177  Q
    |||||||||||||| |||||| ||||||||||||||||| || |||||||| | ||||||||||||| |||||| ||| |||||||||||||||||||||    
T  16952372 ttctttcggtggatcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgaggactggga 16952273  T
Q  178 gttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagt-gctcgtttttgtgaaggagtcagtttt 276  Q
    | ||| |||| ||||||||||| |||| ||||||||||||||||| ||| || || ||||| | ||| |||| | | ||||| ||||||| ||| |||||    
T  16952272 g-tttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgtctgtttt 16952174  T
Q  277 aggcggtgatgtatattttg 296  Q
    | | |||||||| |||||||    
T  16952173 aagtggtgatgtttattttg 16952154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 78 - 296
Target Start/End: Complemental strand, 17023037 - 17022819
Alignment:
Q  78 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggga 177  Q
    |||||||||||||| |||||| ||||||||||||||||| || |||||||| | ||||||||||||| |||||| ||| |||||||||||||||||||||    
T  17023037 ttctttcggtggatcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgaggactggga 17022938  T
Q  178 gttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagt-gctcgtttttgtgaaggagtcagtttt 276  Q
    | ||| |||| ||||||||||| |||| ||||||||||||||||| ||| || || ||||| | ||| |||| | | ||||| ||||||| ||| |||||    
T  17022937 g-tttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgtctgtttt 17022839  T
Q  277 aggcggtgatgtatattttg 296  Q
    | | |||||||| |||||||    
T  17022838 aagtggtgatgtttattttg 17022819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 78 - 296
Target Start/End: Complemental strand, 17060343 - 17060125
Alignment:
Q  78 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggga 177  Q
    |||||||||||||| |||||| ||||||||||||||||| || |||||||| | ||||||||||||| |||||| ||| |||||||||||||||||||||    
T  17060343 ttctttcggtggatcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgaggactggga 17060244  T
Q  178 gttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagt-gctcgtttttgtgaaggagtcagtttt 276  Q
    | ||| |||| ||||||||||| |||| ||||||||||||||||| ||| || || ||||| | ||| |||| | | ||||| ||||||| ||| |||||    
T  17060243 g-tttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgtctgtttt 17060145  T
Q  277 aggcggtgatgtatattttg 296  Q
    | | |||||||| |||||||    
T  17060144 aagtggtgatgtttattttg 17060125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 77 - 362
Target Start/End: Original strand, 34230291 - 34230576
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 176  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||  || |||||||||  |||||||||| |||||||||| ||||||  |    
T  34230291 tttctttcggtggatcggaggttgagaggtggtggaagctgaatgatctttcaaataagagcttttcagatgtggctcaactttggtgtttaggact--g 34230388  T
Q  177 agttttaattttgaggggtg----ttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcag 272  Q
    | ||||  |||| | |||||    ||| |||| ||||||||||  ||| ||||| ||||||||||||| |||| |||| ||||||| ||| | ||||| |    
T  34230389 aatttttttttttatgggtgttttttctttggaggtgagtagttgcgacgggtgttgttggatatcgtttttatagtggtcgttttcgtggaagagtctg 34230488  T
Q  273 ttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcg 362  Q
     |||||  ||||| || ||||||||||  |||||| || || ||||| ||||| | ||||||||||  ||||||||||||||||||||||    
T  34230489 -tttagatggtgacgtgtattttggtggatgttgttctaaggggtgt-ttttacgatgtttattttttggtgttccgcctatatacggcg 34230576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 79 - 284
Target Start/End: Complemental strand, 14106509 - 14106305
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 178  Q
    |||||||||||||  ||||||||||||| ||||||| || |||||| ||| | || ||||||| ||||||||||||||||| |||||||| | ||| |||    
T  14106509 tctttcggtggatcagaggtcgagaggttgtggaagttgtatgatcattcggttaagagctttacgaatgtggctcagcttgggtgttgaagtctgagag 14106410  T
Q  179 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttag 278  Q
    |||| |||||||||||||||| |||| ||||||||||||||||| ||| |  ||||||  ||||||||| || | |||| ||| |||| ||| || ||||    
T  14106409 tttt-attttgaggggtgttctttgggggtgagtagtgacgatgagtggttgtggatactgtgtttacaatgtttgtttctgttaaggtgtccgtcttag 14106311  T
Q  279 gcggtg 284  Q
    | ||||    
T  14106310 gtggtg 14106305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 81 - 288
Target Start/End: Original strand, 5254352 - 5254553
Alignment:
Q  81 tttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagtt 180  Q
    ||||||||||| |||||||||||||| |||||||||| ||| || ||| | | ||||||||||||||||||||||| || |||||||| | ||| |||||    
T  5254352 tttcggtggatcggaggtcgagaggttgtggaagctgcatgttcattcggtttggagcttttcgaatgtggctcagtttgggtgttgaagtctgagagtt 5254451  T
Q  181 ttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggc 280  Q
        ||||||||||||||| |||  ||||||||||||||||||||| |  ||||||  |||||||||||| | |||| ||| |||| ||| || |||||     
T  5254452 ----ttttgaggggtgttctttg--ggtgagtagtgacgatgggtggttgtggatactgtgtttacagtgtttgtttctgttaaggtgtccgtcttaggt 5254545  T
Q  281 ggtgatgt 288  Q
    ||||||||    
T  5254546 ggtgatgt 5254553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 79 - 288
Target Start/End: Original strand, 387268 - 387476
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcga-atgtggctcagctttggtgttgaggactggga 177  Q
    ||||| ||||||| |||||||  |||||  ||||||||| ||| || |||||  ||| ||| ||||| | |||||||||||| ||||||| || ||||||    
T  387268 tcttttggtggatcggaggtcacgaggttttggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctggga 387367  T
Q  178 gttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagtttta 277  Q
    |||||| ||||||||| ||||| |||| ||||| ||||||||||||| | || || || | ||||||||| |||| ||||||||||||||||| ||||||    
T  387368 gtttta-ttttgaggg-tgttctttgggggtgaatagtgacgatgggcggtggtgaattttgtgtttacaatgcttgtttttgtgaaggagtctgtttta 387465  T
Q  278 ggcggtgatgt 288  Q
    || ||||||||    
T  387466 ggtggtgatgt 387476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 77 - 295
Target Start/End: Original strand, 1269573 - 1269787
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatcttt-cagctaggagcttttcgaatgtggctcagctttggtgttgaggactgg 175  Q
    |||||||| |||||| |||||||||||| ||||||||||||||| |||||| | | ||||||||||||||||||||||| |||||||||||||||| |      
T  1269573 tttctttcagtggatcggaggtcgagagttggtggaagctgaataatcttttcggataggagcttttcgaatgtggctctgctttggtgttgaggatt-- 1269670  T
Q  176 gagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttt 275  Q
    ||  |||| |||| | |||| ||  |||| || ||||||||||||||||||  |||||||||||| |||| || | ||||||  | |||||| |  ||||    
T  1269671 gaagtttatttttaaagggtatttcttgg-ggcgagtagtgacgatgggtg--gttggatatcgtttttatagaggtcgtttccgagaaggaatttgttt 1269767  T
Q  276 taggcggtgatgtatatttt 295  Q
    |||| |||||||| ||||||    
T  1269768 taggtggtgatgtgtatttt 1269787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 82 - 279
Target Start/End: Original strand, 7874388 - 7874583
Alignment:
Q  82 ttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttt 181  Q
    |||||||||| |||||||||||||| |||||| ||   || || ||  | |||||||||||||||||||||||||||| |||||||| | || |||||||    
T  7874388 ttcggtggatcggaggtcgagaggttgtggaaactacttgttcatttggttaggagcttttcgaatgtggctcagcttgggtgttgaagtcttggagttt 7874487  T
Q  182 taattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttagg 279  Q
    | |||||||||| ||||| |||| ||||||||||||||||||||| |  ||||||  |||||||||||| | |||| ||| |||| ||| || |||||    
T  7874488 t-attttgagggatgttctttgg-ggtgagtagtgacgatgggtggttgtggatactgtgtttacagtgtttgtttctgtcaaggtgtccgtcttagg 7874583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 159 - 313
Target Start/End: Original strand, 12342992 - 12343144
Alignment:
Q  159 ttggtgttgaggactgggagttttaattttgaggggtgttcgttggtgg-tgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttt 257  Q
    ||||||||||||||||||||||| | ||||||||||||||  |||| || ||||||||||||||| |||  |||||||||||| ||||||| | ||||||    
T  12342992 ttggtgttgaggactgggagttt-atttttgaggggtgtttcttggggggtgagtagtgacgatgagtg--gttggatatcgtttttacagaggtcgttt 12343088  T
Q  258 ttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcag 313  Q
    | ||||||||||| |||||||| ||||| || ||||||| ||  ||||||||||||    
T  12343089 tcgtgaaggagtctgttttaggtggtgacgtgtattttgatggatgttgtcctcag 12343144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 79 - 259
Target Start/End: Complemental strand, 39338853 - 39338674
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcgaat-gtggctcagctttggtgttgaggactggg 176  Q
    ||||||||||||| |||||||| |||||  |||  |||||||||||| ||| | |||| ||| ||||||| ||| |||||||| |||||||||| |||||    
T  39338853 tctttcggtggatcggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggtgctcttcgaattgtgactcagcttgggtgttgaggtctggg 39338754  T
Q  177 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 259  Q
    ||||||| ||||||||| ||||| |||  ||||||||||||||||||| |||| |||||| | ||||||||||||| ||||||    
T  39338753 agtttta-ttttgaggg-tgttctttgtgggtgagtagtgacgatgggcgatggtggata-cttgtttacagtgcttgttttt 39338674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 232 - 365
Target Start/End: Original strand, 4974990 - 4975123
Alignment:
Q  232 ggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgt 331  Q
    ||||||||| ||||||||| ||||||| |||||| |||| |||||||| |||| ||| || ||||||| ||||| ||||||  | ||| ||| |||||||    
T  4974990 ggatatcgtttttacagtggtcgttttcgtgaagaagtctgttttaggtggtggtgtgtaatttggtgggtgttatcctcaaggatgtttttcagggtgt 4975089  T
Q  332 ttattttcgggtgttccgcctatatacggcgcct 365  Q
    |||||||||||||||| ||||||||||| |||||    
T  4975090 ttattttcgggtgttcagcctatatacgacgcct 4975123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 232 - 365
Target Start/End: Original strand, 4992898 - 4993031
Alignment:
Q  232 ggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgt 331  Q
    ||||||||| ||||||||| ||||||| |||||| |||| |||||||| |||| ||| || ||||||| ||||| ||||||  | ||| ||| |||||||    
T  4992898 ggatatcgtttttacagtggtcgttttcgtgaagaagtctgttttaggtggtggtgtgtaatttggtgggtgttatcctcaaggatgtttttcagggtgt 4992997  T
Q  332 ttattttcgggtgttccgcctatatacggcgcct 365  Q
    |||||||||||||||| ||||||||||| |||||    
T  4992998 ttattttcgggtgttcagcctatatacgacgcct 4993031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 145 - 284
Target Start/End: Original strand, 7460836 - 7460974
Alignment:
Q  145 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 244  Q
    ||||||||||||||| |||||||| | |||||||||||| ||||||||||||||| |||| | ||||||||||||||| ||| |  ||||||| ||||||    
T  7460836 aatgtggctcagcttgggtgttgaagtctgggagtttta-ttttgaggggtgttctttggggttgagtagtgacgatgtgtggttgtggatattgtgttt 7460934  T
Q  245 acagtgctcgtttttgtgaaggagtcagttttaggcggtg 284  Q
    |||||| | |||| ||| |||| ||| || ||||||||||    
T  7460935 acagtgtttgtttctgttaaggtgtccgtcttaggcggtg 7460974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 80 - 285
Target Start/End: Complemental strand, 41086785 - 41086572
Alignment:
Q  80 ctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtg-ttgaggactgggag 178  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| | || |||||||| | ||||| |||  |||||| | || |||| || |||    
T  41086785 ctttcggtggatcggaggtcgagaggtggtggaagctgaatgatctttcggataagagctttttggatgtgactctactttggagtttcaggattgcgag 41086686  T
Q  179 ttttaattttgaggggtgttcgtt--------ggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtc 270  Q
     ||| |||||||||||||||  ||        ||||  |||||||||||||||||| | ||||||||||| |||| |||| ||| ||| || |||| |||    
T  41086685 -tttgattttgaggggtgttttttctttggggggtgaggagtagtgacgatgggtggtattggatatcgtttttagagtggtcgctttcgttaaggggtc 41086587  T
Q  271 agttttaggcggtga 285  Q
     |||||||| |||||    
T  41086586 tgttttaggtggtga 41086572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 252
Target Start/End: Complemental strand, 17116800 - 17116694
Alignment:
Q  145 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 244  Q
    ||||||||||||||| ||||||| || ||| ||||||| |||||||||| ||||| |||  |||||||| |||||||||| | || |||||| |||||||    
T  17116800 aatgtggctcagcttgggtgttggggtctgagagtttttattttgaggg-tgttctttgtgggtgagtaatgacgatgggcggtggtggataccgtgttt 17116702  T
Q  245 acagtgct 252  Q
    ||||||||    
T  17116701 acagtgct 17116694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 259
Target Start/End: Original strand, 10524228 - 10524373
Alignment:
Q  113 agctgaatgatctttcagctaggagcttttcga-atgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgag 211  Q
    ||||| |||||| ||| | |||| ||| ||||| |||||||||||||| ||||||| ||  |||||||||||  ||||  |||||||| |||  ||||||    
T  10524228 agctgcatgatccttcggttaggtgctcttcgatatgtggctcagcttgggtgttggggtttgggagtttta--tttggagggtgttctttgtgggtgag 10524325  T
Q  212 tagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 259  Q
    ||||||||||||| | || |||||| ||||||||| ||||| ||||||    
T  10524326 tagtgacgatgggcggtggtggataccgtgtttacggtgcttgttttt 10524373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 77 - 140
Target Start/End: Original strand, 13337364 - 13337427
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagctt 140  Q
    ||||||||||||||| |||||||||||||||||| |  |||||||||||||||| |||||||||    
T  13337364 tttctttcggtggataggaggtcgagaggtggtgaacactgaatgatctttcagataggagctt 13337427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 215 - 358
Target Start/End: Complemental strand, 41113590 - 41113450
Alignment:
Q  215 tgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcaga 314  Q
    |||||||| ||| ||| ||||||||| | |||| |  ||||||| ||||||||||| ||||||||  || | || |||||||||| |||    |||||      
T  41113590 tgacgatgagtgctgtgggatatcgtttgtacaatagtcgttttcgtgaaggagtctgttttaggtagtaacgtttattttggtgggtgc---cctcatg 41113494  T
Q  315 ggtgtcttttagggtgtttattttcgggtgttccgcctatatac 358  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||||    
T  41113493 ggtgttttttagggtatttattttcggatgttccgcctatatac 41113450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 301 - 365
Target Start/End: Original strand, 13337565 - 13337628
Alignment:
Q  301 gtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
    ||||||||||||| ||||| ||||||||||||||||||| |||||||| |||||||||| |||||    
T  13337565 gtgttgtcctcaggggtgt-ttttagggtgtttattttcaggtgttccacctatatacgacgcct 13337628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 228
Target Start/End: Original strand, 14405292 - 14405441
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 178  Q
    |||||||||||||  || |||||| ||| |||||| ||| | | || ||  | ||||||||| ||| |||||||||  ||| |||||||| | |||||||    
T  14405292 tctttcggtggatcagaagtcgagtggttgtggaaactgcacgttcatttggttaggagcttgtcgcatgtggctcgacttgggtgttgaagtctgggag 14405391  T
Q  179 ttttaattttgaggggtgttc-gttggtggtgagtagtgacgatgggtgat 228  Q
    |||| |||||||||| |||||  |||| ||||||||||||| |||||||||    
T  14405392 tttt-attttgagggatgttcttttgggggtgagtagtgacaatgggtgat 14405441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 206 - 365
Target Start/End: Complemental strand, 29139813 - 29139653
Alignment:
Q  206 ggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttagg---cggtgatgtatattttggtgagt 302  Q
    ||||||||||||| |  |||||||||| ||||||| |||  |||| | ||||||||||| |||||  |||||||   |||||| || ||||||||||  |    
T  29139813 ggtgagtagtgacaactggtgatgttgaatatcgt-tttttagtggttgtttttgtgaaagagtctcttttaggtgacggtgacgtgtattttggtggat 29139715  T
Q  303 gttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
    |||||  |||||||||| ||||| ||| |||||||||| ||||||| |  ||||||| |||||    
T  29139714 gttgttttcagaggtgt-ttttaaggtatttattttcgagtgttccactaatatacgacgcct 29139653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 359
Target Start/End: Complemental strand, 41086570 - 41086513
Alignment:
Q  301 gtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacg 359  Q
    |||||||| |||| ||||| ||||||||| |||||||||||||||| ||||||||||||    
T  41086570 gtgttgtcttcaggggtgt-ttttagggtatttattttcgggtgtttcgcctatatacg 41086513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 330 - 365
Target Start/End: Complemental strand, 22884852 - 22884817
Alignment:
Q  330 gtttattttcgggtgttccgcctatatacggcgcct 365  Q
    |||||||||||||||||||||||||||||| |||||    
T  22884852 gtttattttcgggtgttccgcctatatacgacgcct 22884817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 331 - 365
Target Start/End: Complemental strand, 33788362 - 33788328
Alignment:
Q  331 tttattttcgggtgttccgcctatatacggcgcct 365  Q
    |||||||||||||||||||| ||||||||||||||    
T  33788362 tttattttcgggtgttccgcatatatacggcgcct 33788328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 2063208 - 2063253
Alignment:
Q  317 tgtcttttagggtgtttatttt-cgggtgttccgcctatatacggc 361  Q
    ||||||||| |||||||||||| |||||||| ||||||||||||||    
T  2063208 tgtcttttatggtgtttatttttcgggtgtttcgcctatatacggc 2063253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 365
Target Start/End: Original strand, 29997215 - 29997323
Alignment:
Q  256 ttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctata 355  Q
    |||| ||||||| || |||||||  ||||| ||||||||| ||  | || |||||||| | ||  ||||||| ||||||||||||| |||||||| ||||    
T  29997215 ttttatgaaggaatctgttttagatggtgacgtatattttagtaggagtggtcctcagggatga-ttttaggatgtttattttcggatgttccgcttata 29997313  T
Q  356 tacggcgcct 365  Q
    ||||| ||||    
T  29997314 tacggtgcct 29997323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 365
Target Start/End: Original strand, 4472277 - 4472321
Alignment:
Q  321 ttttagggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
    ||||| ||||||||||||||| ||||||| ||||||||| |||||    
T  4472277 ttttatggtgtttattttcggatgttccgtctatatacgacgcct 4472321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 77 - 346
Target Start/End: Complemental strand, 24324788 - 24324520
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 176  Q
    ||||||| ||||||| |||||||||| ||||||||||||||||||||||||| | |||||||||||||  |||||||||||||||||||| ||||| | |    
T  24324788 tttctttaggtggatcggaggtcgaggggtggtggaagctgaatgatctttcggttaggagcttttcggctgtggctcagctttggtgttcaggacggag 24324689  T
Q  177 agttttaattttgaggggtgtt---cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt-gtgaaggagtcag 272  Q
    ||||||| ||||||||||||||   | || | |||||||||||||||||| ||  ||||||||||||  ||||| || |||||||| ||||||||||| |    
T  24324688 agtttta-ttttgaggggtgtttttctttaggggtgagtagtgacgatgg-tg--gttggatatcgttcttacaatggtcgtttttcgtgaaggagtctg 24324593  T
Q  273 ttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgtt 346  Q
    ||||| | ||||| || |||||||||||||||||||||||  ||||| |||||| |||||||||||||||||||    
T  24324592 ttttaagtggtgacgtgtattttggtgagtgttgtcctcaagggtgt-ttttagagtgtttattttcgggtgtt 24324520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 78 - 365
Target Start/End: Original strand, 3478443 - 3478727
Alignment:
Q  78 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggga 177  Q
    |||||||||||||| |||| ||||||||||| ||||||||||||||||||| | |  || ||||||  |  ||||| |||||||||||||||||||||||    
T  3478443 ttctttcggtggatcggagatcgagaggtggcggaagctgaatgatctttcggatgtgaacttttctgagttggctaagctttggtgttgaggactggga 3478542  T
Q  178 gttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagtttta 277  Q
    | ||||||||||||| |||||| |||| ||||||||||||||| || || || |||||||||  ||||||||| |||| || ||||||  ||| |||| |    
T  3478543 g-tttaattttgaggagtgttctttgg-ggtgagtagtgacgacggttggtgatggatatcgcttttacagtg-tcgtattcgtgaagacgtctgtttga 3478639  T
Q  278 ggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
    |  |||||  | | ||||||||  |||||| ||| |   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3478640 gttggtgacttgttttttggtggatgttgtgctctggattgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 3478727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 77 - 237
Target Start/End: Original strand, 8745243 - 8745405
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 176  Q
    ||||||||||||||| |||||||||||||| |||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||| | |||||||    
T  8745243 tttctttcggtggatcggaggtcgagaggttgtggaagctgcatgatctttcagataggagcttttcggatgtggctcagctttggtgttcaagactggg 8745342  T
Q  177 agttttaattttgaggggtg---ttcgttggtggtgagtagtgacgatgggtgatgttggatat 237  Q
    || |||||||||||||||||   ||| |||| ||||||||||||||| || || ||||||||||    
T  8745343 ag-tttaattttgaggggtgtttttctttgggggtgagtagtgacgaaggatggtgttggatat 8745405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 77 - 361
Target Start/End: Complemental strand, 6716727 - 6716443
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatcttt-cagctaggagcttttcgaatgtggctcagctttggtgttgaggactgg 175  Q
    ||||||||||||||| | || ||||||||||||||||||||| |||||||| | | || ||  ||| || |||||||||||||||||||||||||| |||    
T  6716727 tttctttcggtggatcgaag-tcgagaggtggtggaagctgattgatcttttcggataagatttttccggatgtggctcagctttggtgttgaggaatgg 6716629  T
Q  176 gagttttaattttgaggggtgtt-cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagtt 274  Q
    |||||| ||||||| |||||||| |||||| ||||||||||||| ||||||| |||  |||| ||| ||||||||| ||||||| ||||||||||  |||    
T  6716628 gagttt-aattttgtggggtgtttcgttgggggtgagtagtgacaatgggtggtgtgagataccgtttttacagtggtcgttttcgtgaaggagt--gtt 6716532  T
Q  275 ttaggcggtgatgtatattttggtgagtgttgtcctc-agag-gtgtcttttagggtgtttattttcgggtgttccgcctatatacggc 361  Q
    ||||| ||||   | || || |||  ||||| |||||  ||| || | ||||||||||||||||||| |||||||||  ||||||||||    
T  6716531 ttaggtggtgtcatgtacttgggttggtgttatcctcgtgagtgttttttttagggtgtttattttcaggtgttccggttatatacggc 6716443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 77 - 362
Target Start/End: Original strand, 1320885 - 1321169
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 176  Q
    ||||||||||||||| ||||||||||||| ||||| | ||| ||||||  || | || || ||||||  |||||||||| ||||||| || | ||| |||    
T  1320885 tttctttcggtggatcggaggtcgagagggggtggcaactgtatgatccctcggataagatcttttcagatgtggctcaactttggt-ttcatgacaggg 1320983  T
Q  177 agttttaattttgaggggtgttcgtt--ggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaa-ggagtcagt 273  Q
    ||||| | ||||||||||| ||  ||  || ||||||||||||||||| ||| | || |||||||| ||||||||| | | ||| ||||| || ||| ||    
T  1320984 agttt-agttttgaggggtttttctttggggggtgagtagtgacgatgagtggtattagatatcgtttttacagtggttgctttcgtgaaaggggtctgt 1321082  T
Q  274 tttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcg 362  Q
    |||||| |||||||| ||||||||||  || |||| ||| ||| || |||||||||||||||||||||| |||||||||||||||||||    
T  1321083 tttaggtggtgatgtgtattttggtggatggtgtcttca-aggggt-ttttagggtgtttattttcgggagttccgcctatatacggcg 1321169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 79 - 226
Target Start/End: Original strand, 34390056 - 34390202
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 178  Q
    ||||||||||||| |||||||||||||| |||||||||| ||| || |||   |||||||||||| ||||||||||| ||| |||||||  | |||||||    
T  34390056 tctttcggtggatcggaggtcgagaggttgtggaagctgcatgttcattcgattaggagcttttcaaatgtggctcaacttgggtgttgtagtctgggag 34390155  T
Q  179 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtg 226  Q
    |||| |||||||||||||||| |||| | |||||||||||||||||||    
T  34390156 tttt-attttgaggggtgttctttggggatgagtagtgacgatgggtg 34390202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 79 - 259
Target Start/End: Complemental strand, 47325873 - 47325693
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactggg 176  Q
    ||||||| ||||| |||||||| |||||  |||  |||||||||||| ||| | |||| ||| |||||| ||||||||||||| ||||||| || |||||    
T  47325873 tctttcgatggatcggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctggg 47325774  T
Q  177 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 259  Q
    ||||||| ||||||||| ||||| |||  ||||||||||||||||||| |||| ||||||  |||||||||||||| ||||||    
T  47325773 agtttta-ttttgaggg-tgttctttgtgggtgagtagtgacgatgggcgatgatggatactgtgtttacagtgcttgttttt 47325693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 206 - 356
Target Start/End: Original strand, 33719185 - 33719334
Alignment:
Q  206 ggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttt-tgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgt 304  Q
    ||||||||||||||||| ||  ||||||||||| | ||||||| | ||||||| |||||||||||| |||||||||||||||   |||||||||| ||||    
T  33719185 ggtgagtagtgacgatgagtagtgttggatatcatttttacagaggtcgttttttgtgaaggagtcggttttaggcggtgataggtattttggtgggtgt 33719284  T
Q  305 tgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatat 356  Q
    ||||||||   |||| |||||||||||||| |||| | ||||||||||||||    
T  33719285 tgtcctcatgagtgt-ttttagggtgtttactttc-gatgttccgcctatat 33719334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 79 - 288
Target Start/End: Complemental strand, 35745813 - 35745601
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcga-at---gtggctcagctttggtgttgaggactg 174  Q
    |||||||||||||||||||| ||||||| |||||||||| ||| || ||| | |||||||||||||| ||   |||||||||||| |||||||| | |||    
T  35745813 tctttcggtggattggaggtggagaggttgtggaagctgcatgttcattcggttaggagcttttcgatatatagtggctcagcttgggtgttgaagtctg 35745714  T
Q  175 ggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagtt 274  Q
       ||||| |||||||| ||||||| |||| |||||||||||||||||||||  | ||||| | |||||||  ||| | |||| ||| |||| ||| ||     
T  35745713 actgtttt-attttgagaggtgttctttgggggtgagtagtgacgatgggtgggggtggatgttgtgtttagtgtgtttgtttctgttaaggtgtctgtc 35745615  T
Q  275 ttaggcggtgatgt 288  Q
    ||||| ||||||||    
T  35745614 ttaggtggtgatgt 35745601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 78 - 312
Target Start/End: Original strand, 23983298 - 23983530
Alignment:
Q  78 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggga 177  Q
    ||||||||||| || |||||| |||||||||||  || |||||||||||||   || |||||||||| || ||| ||||||||| || ||||||| | ||    
T  23983298 ttctttcggtgtatcggaggttgagaggtggtgacagttgaatgatctttcgaatatgagcttttcggatctggttcagctttgatgatgaggaccgaga 23983397  T
Q  178 gttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagtttta 277  Q
      ||| |||| ||| ||| ||| || | |||||||||||| |||||||  |  || ||||||| ||| ||||| | ||||| ||||| ||||| ||||||    
T  23983398 -atttcatttagagcggtcttcttttggggtgagtagtgatgatgggtagttatgtatatcgt-ttttcagtggttgttttcgtgaatgagtctgtttta 23983495  T
Q  278 ggcggtgatgtatattttggtgagtgttgtcctca 312  Q
    || |||| ||| |||||||||| ||||||||||||    
T  23983496 ggtggtggtgtttattttggtgggtgttgtcctca 23983530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 77 - 365
Target Start/End: Complemental strand, 42533244 - 42532962
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 176  Q
    |||||||||||||||  ||||||| |||||||||| | ||||| |||||||||| || |||||||||| || ||| ||||||||||| || ||||         
T  42533244 tttctttcggtggatcagaggtcgtgaggtggtggcaactgaacgatctttcagataagagcttttcggatatggatcagctttggt-ttcagga----- 42533151  T
Q  177 agttttaattttgaggggtg---ttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagt 273  Q
       |||| |||| || ||||   ||| |||| || |||||||||||||||||| | |||||| || | |||||| || | | ||| |||||   ||  ||    
T  42533150 --gtttattttttagaggtgtttttctttgggggcgagtagtgacgatgggtggtattggatttcatttttacaatggttgctttcgtgaataggtatgt 42533053  T
Q  274 tttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
    |||||| | ||| |||| |||| ||| |||||||| |||  || || ||||||||||||||||| | |||||||||||||||||||||||||    
T  42533052 tttaggtgatgacgtatttttttgtgggtgttgtcatcaagggagt-ttttagggtgtttatttccaggtgttccgcctatatacggcgcct 42532962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 288
Target Start/End: Complemental strand, 44353552 - 44353345
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactggg 176  Q
    ||||||||||||| |||||||| |||||  |||  ||||| |||||| ||| | |||| ||| |||||| |||| | | |||| ||||||| || |||||    
T  44353552 tctttcggtggatcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtgacccggcttgggtgttggggtctggg 44353453  T
Q  177 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagtttt 276  Q
    ||||||| ||||||||| ||||| |||  ||||||||||||||||||  | || |||||| ||||||||||||||| | |||| |   |||||| |||||    
T  44353452 agttttatttttgaggg-tgttctttgtaggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgatttttt---ggagtctgtttt 44353357  T
Q  277 aggcggtgatgt 288  Q
    ||| ||||||||    
T  44353356 aggtggtgatgt 44353345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 259
Target Start/End: Complemental strand, 31972054 - 31971942
Alignment:
Q  145 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 244  Q
    ||||||||||||||| ||||||| || ||||||||||||  ||||  |||||||| |||  ||||||||||||||||||| | || | |||| |||||||    
T  31972054 aatgtggctcagcttgggtgttggggtctgggagtttta--tttggagggtgttctttgtgggtgagtagtgacgatgggcggtggttgataccgtgttt 31971957  T
Q  245 acagtgctcgttttt 259  Q
    |||||||| ||||||    
T  31971956 acagtgcttgttttt 31971942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 252 - 346
Target Start/End: Complemental strand, 6492946 - 6492852
Alignment:
Q  252 tcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgtt 346  Q
    |||||||| |||||||||| |||||||| ||||| ||  |||||||||  ||||||||||| |||||| ||||| ||||||||||||| ||||||    
T  6492946 tcgtttttatgaaggagtctgttttaggtggtgacgtgaattttggtggatgttgtcctcataggtgttttttatggtgtttattttcaggtgtt 6492852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 146 - 259
Target Start/End: Original strand, 38306423 - 38306534
Alignment:
Q  146 atgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttta 245  Q
    |||||||||||||| ||||||| || ||| |||||||| ||||||||| ||||| |||  ||||||||||||||||||||| || |||||||||||| |     
T  38306423 atgtggctcagcttgggtgttggggtctgtgagtttta-ttttgaggg-tgttctttgtaggtgagtagtgacgatgggtggtggtggatatcgtgtctg 38306520  T
Q  246 cagtgctcgttttt 259  Q
    |||| || ||||||    
T  38306521 cagttcttgttttt 38306534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 288
Target Start/End: Original strand, 3867278 - 3867415
Alignment:
Q  146 atgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttta 245  Q
    |||||||||||||| |||||||  |  ||| ||||||| ||||||||| ||||| |||| ||||||||||||||||||  | || |||||||||||||||    
T  3867278 atgtggctcagcttgggtgttggagtatggaagtttta-ttttgaggg-tgttctttgggggtgagtagtgacgatggacggtggtggatatcgtgttta 3867375  T
Q  246 cagtgctcgtttttgtgaaggagtcagttttaggcggtgatgt 288  Q
    |||   | ||||||||||||||||  ||||| || ||||||||    
T  3867376 cag---ttgtttttgtgaaggagtttgttttgggtggtgatgt 3867415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 259
Target Start/End: Complemental strand, 5860276 - 5860096
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactggg 176  Q
    ||||||||||| | |||||||| |||||  |||  ||||| |||||| ||||| |||| ||| |||||| ||||||||||||| ||||||| || |||||    
T  5860276 tctttcggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcagttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctggg 5860177  T
Q  177 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 259  Q
    |||||| ||||| | |||||||| |||  | |||||||||||||||||  ||| || ||| |||||| | |||||| ||||||    
T  5860176 agtttt-attttca-gggtgttctttgtggatgagtagtgacgatgggcaatggtgaataccgtgttaatagtgcttgttttt 5860096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 6585043 - 6585118
Alignment:
Q  146 atgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatg 222  Q
    |||||||||||||| |||||||| | ||||||||||| ||||||||||||| |  |||| |||||||||||||||||    
T  6585043 atgtggctcagcttgggtgttgaagtctgggagtttt-attttgaggggtgctatttggaggtgagtagtgacgatg 6585118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 363
Target Start/End: Complemental strand, 16828906 - 16828805
Alignment:
Q  261 tgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacgg 360  Q
    |||||| | |||||||||  | |||||| ||||||||||  |||| || |||| ||| | || |||| ||||||||||||||||||||||||||||||||    
T  16828906 tgaaggggccagttttagatgatgatgtgtattttggtggttgttttcttcaggggtat-ttctaggatgtttattttcgggtgttccgcctatatacgg 16828808  T
Q  361 cgc 363  Q
    |||    
T  16828807 cgc 16828805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 365
Target Start/End: Original strand, 16954775 - 16954867
Alignment:
Q  272 gttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
    |||||||| ||||| || |||||| |||  |||| || |||| ||||| |||||| |||||||||||||| |||||||||||||||||| ||||    
T  16954775 gttttaggtggtgacgtgtatttttgtggttgttttcttcaggggtgt-ttttagcgtgtttattttcggatgttccgcctatatacggtgcct 16954867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 36449171 - 36449224
Alignment:
Q  74 ggttttctttcggtggattggaggtcgagaggtggtggaagctgaatgatcttt 127  Q
    |||||||||||||||||| |||||| ||||||||||||||||  ||||||||||    
T  36449171 ggttttctttcggtggatcggaggttgagaggtggtggaagcataatgatcttt 36449224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 79 - 214
Target Start/End: Original strand, 33435203 - 33435337
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactggga 177  Q
    ||||||||||||| |||||||| ||||| ||| |||||  |||||| ||| |  ||| ||| |||||| ||||||||||||| | |||||||| ||| ||    
T  33435203 tctttcggtggatcggaggtcgcgaggttgtgaaagctacatgatccttcggtcaggtgctcttcgaattgtggctcagcttggttgttgaggtctgaga 33435302  T
Q  178 gttttaattttgaggggtgttcgttggtggtgagtag 214  Q
    |||||  |||||| |||||||| |||| |||||||||    
T  33435303 gtttt-cttttga-gggtgttctttgggggtgagtag 33435337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 319
Target Start/End: Complemental strand, 28534336 - 28534277
Alignment:
Q  260 gtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgt 319  Q
    ||||| ||||| |||||||| |||||||| |||||||||| ||||||||||||| |||||    
T  28534336 gtgaaagagtctgttttaggtggtgatgtttattttggtgggtgttgtcctcaggggtgt 28534277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 332 - 365
Target Start/End: Complemental strand, 28534240 - 28534207
Alignment:
Q  332 ttattttcgggtgttccgcctatatacggcgcct 365  Q
    ||||||||||||||||||||||||||||||||||    
T  28534240 ttattttcgggtgttccgcctatatacggcgcct 28534207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 252
Target Start/End: Original strand, 37795082 - 37795255
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactggg 176  Q
    ||||||||||| | |||||||| |||||  |||  ||||| |||||| ||| | |||| ||| |||||| ||||||||||||| ||||||| ||  || |    
T  37795082 tctttcggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaactgtggctcagcttgggtgttggggtttgag 37795181  T
Q  177 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgct 252  Q
    ||||||| ||||||||| ||||| |||  | | |||||| | |||||| | || |||||| |||||||||||||||    
T  37795182 agtttta-ttttgaggg-tgttctttgtggttaagtagtaatgatgggcggtggtggataccgtgtttacagtgct 37795255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 44755679 - 44755729
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatcttt 127  Q
    |||||||||||  ||  |||||||| |||||||||||||||||||||||||    
T  44755679 tttctttcggtatatcagaggtcgataggtggtggaagctgaatgatcttt 44755729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 362
Target Start/End: Complemental strand, 26385903 - 26385863
Alignment:
Q  321 ttttagggtgtttattttcgggtgttccgcctatatacggcg 362  Q
    ||||| |||||||||||| |||||||||||||||||||||||    
T  26385903 ttttatggtgtttatttt-gggtgttccgcctatatacggcg 26385863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 48058644 - 48058595
Alignment:
Q  78 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatcttt 127  Q
    ||||||||||||  ||||||| | ||||||||||||||||| ||||||||    
T  48058644 ttctttcggtggtctggaggttgtgaggtggtggaagctgattgatcttt 48058595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 362
Target Start/End: Original strand, 8745469 - 8745504
Alignment:
Q  326 gggtgtttattttcgggtgttccgcctatatacggcg 362  Q
    |||||||| ||||||||||||||||||||||||||||    
T  8745469 gggtgttt-ttttcgggtgttccgcctatatacggcg 8745504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 358
Target Start/End: Original strand, 13312180 - 13312208
Alignment:
Q  330 gtttattttcgggtgttccgcctatatac 358  Q
    |||||||||||||||||||||||||||||    
T  13312180 gtttattttcgggtgttccgcctatatac 13312208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 360
Target Start/End: Original strand, 25438691 - 25438731
Alignment:
Q  321 ttttagggtgttta-ttttcgggtgttccgcctatatacgg 360  Q
    ||||| |||||||| ||||||||||||||||||||||||||    
T  25438691 ttttatggtgtttacttttcgggtgttccgcctatatacgg 25438731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 41089735 - 41089691
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtggtggaagctgaatgat 123  Q
    ||||||||||||| |||||||| ||||| |||||||||| |||||    
T  41089735 tctttcggtggatcggaggtcgcgaggttgtggaagctgcatgat 41089691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 77 - 358
Target Start/End: Original strand, 36799 - 37078
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 176  Q
    ||||||||||||||| ||||||||||| |||||||||| |||||| |||||| | |||||||||||||| |||||||||||||||||||| ||||| |||    
T  36799 tttctttcggtggatcggaggtcgagatgtggtggaagttgaatggtctttcggttaggagcttttcgattgtggctcagctttggtgttcaggacgggg 36898  T
Q  177 agttttaattttgaggggtg---ttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagt 273  Q
     |  ||| |||| |||||||   ||| |||| |||||||||||||| ||| ||  ||||||| |||| ||||||||| | | ||| ||||||||||| ||    
T  36899 gg--ttattttttaggggtgtttttctttgggggtgagtagtgacggtggatg--gttggatgtcgtttttacagtggt-ggtttcgtgaaggagtctgt 36993  T
Q  274 tttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatac 358  Q
    |||||| ||||| || ||||||| || |||| |||||||  ||||| ||||| ||||||||||||||| ||||||||||||||||    
T  36994 tttaggtggtgacgtgtattttgttgggtgtggtcctcatgggtgttttttatggtgtttattttcggatgttccgcctatatac 37078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 77 - 365
Target Start/End: Original strand, 58217 - 58506
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 176  Q
    ||||||||||||||| |||||||||||| || |||||||||||| ||||||| | || ||||||||||||||||||||||||||||||||  |||||| |    
T  58217 tttctttcggtggatcggaggtcgagagatgatggaagctgaattatctttcggataagagcttttcgaatgtggctcagctttggtgttcgggactgag 58316  T
Q  177 agttttaattttgagg---ggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagt 273  Q
    || |||||||||||||   | ||||| ||||  |||||||||||||| ||||  |||||||||||   |||||| || ||||||| ||||||||||| ||    
T  58317 ag-tttaattttgaggagtgttgttctttgggtgtgagtagtgacgacgggtagtgttggatatcagttttacaatggtcgttttcgtgaaggagtctgt 58415  T
Q  274 tttaggcggtgatgtatattttgg-tgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
    ||| || |||||||| || ||||| ||| || ||| ||||  ||||| ||||||||| |||||||| ||||||||  ||||||||||||||||    
T  58416 ttttggtggtgatgtgtactttggctga-tggtgttctcatgggtgt-ttttagggtatttatttttgggtgttctacctatatacggcgcct 58506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 77 - 365
Target Start/End: Complemental strand, 26045955 - 26045666
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 176  Q
    ||||| |||| |||| ||||||||  |||  ||||||||||| ||||||||||| || |||||||||| | ||| |||| |||||||||| |||| || |    
T  26045955 tttctctcgggggatcggaggtcgttaggctgtggaagctgattgatctttcagatatgagcttttcggaggtgactcaactttggtgtttaggattgag 26045856  T
Q  177 agttttaattttgaggggtgtt---cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagt 273  Q
    ||||| ||||||||||||||||   | |||| ||||||||||||||||||| | |||||||| |||| ||||| ||| || ||||  ||||| |||| ||    
T  26045855 agttt-aattttgaggggtgtttttctttgg-ggtgagtagtgacgatgggaggtgttggatttcgtttttaccgtggtcattttcatgaagaagtctgt 26045758  T
Q  274 tttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
    |||||| ||||| ||  ||||||||| ||||||||||||| || || |||||||||||||||||| || ||||||| |||||||||||||||    
T  26045757 tttaggtggtgacgtgaattttggtgggtgttgtcctcaggggcgttttttagggtgtttatttttggatgttccgtctatatacggcgcct 26045666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 138 - 365
Target Start/End: Complemental strand, 13954178 - 13953951
Alignment:
Q  138 cttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt-cgttggtggtgagtagtgacgatgggtgatgttggata 236  Q
    ||||||| ||||||||||||||||| |||||||||||||||||| ||||| |||||||||| |||||| || |||| ||||||||||||||||| |||||    
T  13954178 cttttcggatgtggctcagctttggcgttgaggactgggagttt-aatttagaggggtgtttcgttgggggagagttgtgacgatgggtgatgtgggata 13954080  T
Q  237 tcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttatt 336  Q
    | || ||||||||  |||| ||  ||||  |||| |||||||| | |||  | |||||||||| | ||||||||||  ||| | ||||| ||||||||||    
T  13954079 ttgtttttacagtagtcgtcttcatgaaaaagtctgttttaggagatgacatgtattttggtgggagttgtcctcaagggtattttttaaggtgtttatt 13953980  T
Q  337 ttcgggtgttccgcctatatacggcgcct 365  Q
    ||| |||||||||||||||||||||||||    
T  13953979 ttcaggtgttccgcctatatacggcgcct 13953951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 77 - 354
Target Start/End: Original strand, 8297558 - 8297838
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 176  Q
    |||||||||||| || |||||||| ||||||||||||| |||||| |||||| | ||||||||||||| ||||||||| | ||||||||| | ||  |||    
T  8297558 tttctttcggtgaatcggaggtcgtgaggtggtggaagttgaatggtctttcggataggagcttttcggatgtggctcggttttggtgttcatgatgggg 8297657  T
Q  177 agttttaattttgaggggtg---ttcgttggtg----gtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagt 269  Q
    || |||||||||||||||||   ||| |||| |    ||||||||||||||| ||||  |||||| ||||| |||||| || || ||||  |||||||||    
T  8297658 ag-tttaattttgaggggtgtttttctttgggggtgagtgagtagtgacgataggtg--gttggaaatcgtttttacattggtctttttcttgaaggagt 8297754  T
Q  270 cagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctat 354  Q
      |||||||| |||||||| ||||||||||  |||| ||||||| ||||| ||||||||||| ||||||| ||||||||||||||    
T  8297755 gtgttttaggtggtgatgtgtattttggtggatgttatcctcaggggtgt-ttttagggtgtgtattttcaggtgttccgcctat 8297838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 77 - 362
Target Start/End: Complemental strand, 14302421 - 14302150
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 176  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||| | ||               |||||||||||||||||| |||| ||||    
T  14302421 tttctttcggtggatcggaggtcgagaggtggtggaagctgcatgatctttcggata---------------tggctcagctttggtgttcaggagtggg 14302337  T
Q  177 agttttaattttgaggggtgtt---cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagt 273  Q
    ||||| ||||||||||||| ||   | |||| | |||||||||||||  |||| ||||||||||||| |||||| || ||||||| | |||||| || ||    
T  14302336 agttt-aattttgaggggtatttttctttggggatgagtagtgacgacaggtggtgttggatatcgtttttacattggtcgttttcgcgaaggaatctgt 14302238  T
Q  274 tttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcg 362  Q
    |||||| ||||| || |||||||||| |||||||| |||| ||||| ||||||| | |||||||| |||||||||  ||||||||||||    
T  14302237 tttaggtggtgacgtgtattttggtgggtgttgtcatcaggggtgt-ttttaggatttttatttttgggtgttccttctatatacggcg 14302150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 93 - 365
Target Start/End: Complemental strand, 26405520 - 26405251
Alignment:
Q  93 ggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgagg 192  Q
    |||| ||||||||||||||||||||| || |||||| | || |||||||||| | |||||||  |||||||||| |||||  ||||||| |||||||| |    
T  26405520 ggagatcgagaggtggtggaagctgattggtctttcggatatgagcttttcggaggtggctcgactttggtgttcaggacgaggagttt-aattttgatg 26405422  T
Q  193 ggtgttcgt--tggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtat 290  Q
     |||||  |  | | |||||||||||||||||||||||  ||||||| || || |||||| || |||   ||||| |||| |||||||| ||||| || |    
T  26405421 agtgtttttctttgaggtgagtagtgacgatgggtgat--tggatatggttttaacagtg-tcatttccatgaagaagtctgttttaggtggtgacgtgt 26405325  T
Q  291 attttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
    |||||||||  |||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||| |||||    
T  26405324 attttggtggttgttgtcctcaggggtgt-ttttaaggtgtttattttcgggtgttccgactatatacgacgcct 26405251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 247 - 362
Target Start/End: Original strand, 30097593 - 30097708
Alignment:
Q  247 agtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgtt 346  Q
    |||||| ||||| ||||||||||| |||||||| ||||| || |||||||||| |||||||| |||  | ||| ||||||||||||||||||||||||||    
T  30097593 agtgcttgttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtgttgtcatcatggatgttttttagggtgtttattttcgggtgtt 30097692  T
Q  347 ccgcctatatacggcg 362  Q
    ||||||||||||||||    
T  30097693 ccgcctatatacggcg 30097708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 146 - 288
Target Start/End: Complemental strand, 7161935 - 7161795
Alignment:
Q  146 atgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttta 245  Q
    ||||||||||||||  |||||| || |||||||||||| |||||| || ||||| |||| |||||||||||||| |||||| || |||| ||||||||||    
T  7161935 atgtggctcagcttgtgtgttggggtctgggagtttta-ttttgatgg-tgttctttgggggtgagtagtgacgttgggtggtggtggaaatcgtgttta 7161838  T
Q  246 cagtgctcgtttttgtgaaggagtcagttttaggcggtgatgt 288  Q
    ||||||| ||||||||||||||||| ||||||||  |||||||    
T  7161837 cagtgcttgtttttgtgaaggagtctgttttaggtagtgatgt 7161795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 181 - 365
Target Start/End: Original strand, 7682747 - 7682931
Alignment:
Q  181 ttaattttgaggggtgtt-cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttagg 279  Q
    |||||||||||||||||| | |||| | |||||||||||||||| || ||   ||||  || ||||| ||| ||||||||||||| |||||  |||||||    
T  7682747 ttaattttgaggggtgtttcattggggttgagtagtgacgatggatggtgcgagataaagtttttacggtggtcgtttttgtgaaagagtctattttagg 7682846  T
Q  280 cggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
     |||||||| |||||||||| ||||||| |||| | || | |||| ||||| |||||||||| ||||||||||||||||| |||||    
T  7682847 tggtgatgtgtattttggtgggtgttgttctcataagtat-tttttgggtgcttattttcggatgttccgcctatatacgacgcct 7682931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 77 - 265
Target Start/End: Complemental strand, 33258873 - 33258682
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 176  Q
    ||||||||||||||| |||||||||||| | |||||||||||||||| | ||||  |||||||| | | ||||||||||||||||||||| ||| || ||    
T  33258873 tttctttcggtggatcggaggtcgagagatagtggaagctgaatgatttctcagggaggagcttgttggatgtggctcagctttggtgttcaggtctagg 33258774  T
Q  177 agttttaattttgaggggtg----ttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaag 265  Q
    || |||  ||||| ||||||    ||| || | ||||||||||| |||||| || | ||||||||||| ||||||||| ||| ||| ||||||    
T  33258773 ag-tttgtttttgtggggtgttttttctttaggggtgagtagtggcgatggatggtattggatatcgtttttacagtggtcgctttcgtgaag 33258682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 77 - 365
Target Start/End: Original strand, 25992097 - 25992379
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 176  Q
    ||||||||| ||||| |||||||| ||| || |||||||| ||||||||||| |  || ||||||| | | ||||||| ||||||||||| |||||| ||    
T  25992097 tttctttcgatggatcggaggtcgtgagatgttggaagcttaatgatctttcggggagaagctttttgtaggtggctctgctttggtgttcaggactagg 25992196  T
Q  177 agttttaattttgagggg----tgttcgttggtg--gtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtc 270  Q
    |||||   ||||||||||    | ||| |||| |  | |||||||| ||||||||| | ||||||||||| ||||||||| | | ||| ||||||| |||    
T  25992197 agttt--gttttgaggggtattttttctttgggggcgagagtagtggcgatgggtggtattggatatcgtttttacagtggttgctttcgtgaaggggtc 25992294  T
Q  271 agttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
     |||||||| ||        ||||||||| |||||||| |  | ||||| |||||||||||||||| ||||||||||||| ||||||||||||||    
T  25992295 tgttttaggtgg--------attttggtgggtgttgtcat-tggggtgt-ttttagggtgtttattgtcgggtgttccgcatatatacggcgcct 25992379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 198
Target Start/End: Complemental strand, 7195227 - 7195112
Alignment:
Q  81 tttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagtt 180  Q
    ||||||||||| |||||||||||||| ||||||||||||| ||||||  | |||||||||| || |||||||||||||||||| || |||||| ||||||    
T  7195227 tttcggtggatcggaggtcgagaggtcgtggaagctgaataatcttttggataggagctttgcggatgtggctcagctttggtattcaggact-ggagtt 7195129  T
Q  181 ttaattttgaggggtgtt 198  Q
    || |||||||||| ||||    
T  7195128 tt-attttgagggttgtt 7195112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 151 - 333
Target Start/End: Complemental strand, 21398236 - 21398054
Alignment:
Q  151 gctcagctttggtgttgaggactgggagttttaattttgaggggtgtt-cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagt 249  Q
    ||||| ||||||||||||||||| ||||||| | ||| ||||| |||| |||||| |||||||| ||| |||||||| ||  ||||||||| ||||||      
T  21398236 gctcaactttggtgttgaggactaggagttt-attttagagggttgtttcgttgggggtgagtactgatgatgggtggtgcgggatatcgtttttacaaa 21398138  T
Q  250 gctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgttt 333  Q
    | | ||||| ||||||| ||| |||||||  ||||| || |||||| || |||||||||||||| ||||| ||||| |||||||    
T  21398137 ggttgttttcgtgaaggcgtctgttttagatggtgacgtgtatttttgtaagtgttgtcctcaggggtgttttttaaggtgttt 21398054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 254 - 355
Target Start/End: Complemental strand, 7195114 - 7195014
Alignment:
Q  254 gtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgccta 353  Q
    ||||||||||||||||| |||||||| ||||| || |||||||||| ||||||||| ||| ||||| |||||||||||||||||| || |||||||| ||    
T  7195114 gtttttgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtgttgtccgcagcggtgt-ttttagggtgtttatttttggatgttccgcata 7195016  T
Q  354 ta 355  Q
    ||    
T  7195015 ta 7195014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 229 - 359
Target Start/End: Original strand, 10174923 - 10175051
Alignment:
Q  229 gttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttaggg 328  Q
    |||||||||||| ||||| ||| ||||||||  ||||||||| |||||||| ||| | || || ||||||| ||||||||||| ||||||| |||||||     
T  10174923 gttggatatcgtttttaccgtggtcgttttttagaaggagtctgttttaggtggttacgtgtactttggtgggtgttgtcctcggaggtgt-ttttagga 10175021  T
Q  329 tgtttattttcgggtgttccgcctatatacg 359  Q
    |||||| |||| ||||||  |||||||||||    
T  10175022 tgttta-tttcaggtgttttgcctatatacg 10175051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 312 - 364
Target Start/End: Complemental strand, 24072017 - 24071965
Alignment:
Q  312 agaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcc 364  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  24072017 agaggtgtcttttatgatgtttattttcgggtgttccgcctatatacggcgcc 24071965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 355
Target Start/End: Complemental strand, 33110050 - 33109913
Alignment:
Q  215 tgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcaga 314  Q
    |||||||||||| | ||||||||||| ||||||||| ||||||| ||||||| ||  |||||||| | ||| || |||||||||| |||||||| | ||     
T  33110050 tgacgatgggtggtattggatatcgtttttacagtggtcgttttcgtgaaggggtttgttttaggtgatgacgtgtattttggtgggtgttgtcat-ag- 33109953  T
Q  315 ggtgtcttttagggtgtttattttcgggtgttccgcctata 355  Q
    ||||| |||||  ||||||||||||||||||| || |||||    
T  33109952 ggtgt-ttttaaagtgtttattttcgggtgtttcggctata 33109913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 77 - 167
Target Start/End: Complemental strand, 7392028 - 7391937
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctt-tcagctaggagcttttcgaatgtggctcagctttggtgttg 167  Q
    ||||||||||||||| ||||||||||||||||| ||||| || ||||||| |  | ||||||||||||| ||||||||| ||||| ||||||    
T  7392028 tttctttcggtggatcggaggtcgagaggtggttgaagcggattgatcttattggataggagcttttcggatgtggctctgctttcgtgttg 7391937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 145 - 259
Target Start/End: Original strand, 18593404 - 18593516
Alignment:
Q  145 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 244  Q
    ||||||||||| ||| ||||||| || ||||||||||||  ||||  || ||||| |||  ||||||||||||||||||| | || |||||| |||||||    
T  18593404 aatgtggctcaacttgggtgttggggtctgggagtttta--tttggaggatgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgttt 18593501  T
Q  245 acagtgctcgttttt 259  Q
    |||||||| ||||||    
T  18593502 acagtgcttgttttt 18593516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 77 - 155
Target Start/End: Complemental strand, 21402828 - 21402749
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatc-tttcagctaggagcttttcgaatgtggctca 155  Q
    |||||||||||||||||||||| ||||||||||||||| ||| ||||| |||| | |||||||||||| || ||||||||    
T  21402828 tttctttcggtggattggaggttgagaggtggtggaagttgattgatcttttcgggtaggagcttttcaaacgtggctca 21402749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 147 - 358
Target Start/End: Complemental strand, 7391917 - 7391709
Alignment:
Q  147 tgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt-cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttta 245  Q
    |||||||| ||||| |||||||||| |||||| ||  ||||||||||||||| | |||| |||||||||||||||  ||   ||  |||| |||| ||||    
T  7391917 tgtggctctgctttcgtgttgaggaatgggagatt--attttgaggggtgtttctttgggggtgagtagtgacgacaggctgtgcgggatttcgttttta 7391820  T
Q  246 cagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgt 345  Q
    ||||| || |||  ||| |||| ||| ||||||| |||||  | ||||||| || ||||||||||||  ||||| ||||||| ||| || |||| ||| |    
T  7391819 cagtggtcttttccgtggaggaatcaattttaggtggtgacatgtattttgatg-gtgttgtcctcatgggtgt-ttttaggttgtgtactttcaggttt 7391722  T
Q  346 tccgcctatatac 358  Q
    |||||||||||||    
T  7391721 tccgcctatatac 7391709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 259
Target Start/End: Original strand, 29087575 - 29087752
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 178  Q
    ||||||||||||| |||||||| |||||  ||| ||||  |||||| ||  |  ||| ||| |||| |||||||||| ||| | ||||| || |||||||    
T  29087575 tctttcggtggatcggaggtcgcgaggttatggtagctccatgatcctttggtcaggtgctcttcgtatgtggctcaacttagatgttggggtctgggag 29087674  T
Q  179 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 259  Q
     |||| ||||||||| |  || || | ||||||||||||||||||| | || || ||| ||||||||||||||| ||||||    
T  29087675 cttta-ttttgagggtt--tctttaggggtgagtagtgacgatgggcggtggtgaataccgtgtttacagtgcttgttttt 29087752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 365
Target Start/End: Original strand, 31721950 - 31722049
Alignment:
Q  264 aggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgc 363  Q
    ||||||||||||||||  ||||||| |||||||||| ||||||  | ||  |||| ||||    |||||| ||||||||||||||| |||||||||||||    
T  31721950 aggagtcagttttagg--gtgatgtttattttggtgggtgttgatcacatgggtgcctttgttagtgtttgttttcgggtgttccgtctatatacggcgc 31722047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 327 - 365
Target Start/End: Original strand, 31742504 - 31742542
Alignment:
Q  327 ggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  31742504 ggtgtttgttttcgggtgttccgcctatatacggcgcct 31742542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 247
Target Start/End: Original strand, 34378259 - 34378359
Alignment:
Q  145 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 244  Q
    ||||||||||||||| ||||||| ||  || |||||||| ||||||||| ||||| |||  ||||||||||||||||||  | || |||||| |||||||    
T  34378259 aatgtggctcagcttgggtgttggggtttgagagtttta-ttttgaggg-tgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgttt 34378356  T
Q  245 aca 247  Q
    |||    
T  34378357 aca 34378359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 284
Target Start/End: Complemental strand, 5656931 - 5656878
Alignment:
Q  231 tggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtg 284  Q
    ||||||||||||||||||| ||  ||||| ||||||||||||||||||| ||||    
T  5656931 tggatatcgtgtttacagttcttctttttatgaaggagtcagttttaggtggtg 5656878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 698522 - 698611
Alignment:
Q  145 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggata 236  Q
    ||||||||||||||| ||||||| || ||| ||||||||  ||||  |||||||| |||  |||||||||||||||| || |||| ||||||    
T  698522 aatgtggctcagcttgggtgttggggtctgagagtttta--tttggagggtgttctttgtgggtgagtagtgacgatcggcgatggtggata 698611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 288
Target Start/End: Complemental strand, 18313504 - 18313425
Alignment:
Q  206 ggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgt 288  Q
    ||||||||||||||||| ||| || |||||||||||||||| ||| | |||||| |   |||||| |||||||| ||||||||    
T  18313504 ggtgagtagtgacgatgagtggtgatggatatcgtgtttacggtgtttgttttttt---ggagtctgttttaggtggtgatgt 18313425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 358
Target Start/End: Original strand, 37108103 - 37108170
Alignment:
Q  290 tattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatac 358  Q
    |||||||||| ||||| ||||||  ||||| ||||||||||||||||||  | ||||||||||||||||    
T  37108103 tattttggtgggtgttatcctcatgggtgt-ttttagggtgtttattttttgatgttccgcctatatac 37108170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 39024432 - 39024385
Alignment:
Q  78 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatct 125  Q
    |||||||||||||||||| || ||||||||||||||  ||||||||||    
T  39024432 ttctttcggtggattggaagttgagaggtggtggaacttgaatgatct 39024385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 361
Target Start/End: Original strand, 23426646 - 23426674
Alignment:
Q  333 tattttcgggtgttccgcctatatacggc 361  Q
    |||||||||||||||||||||||||||||    
T  23426646 tattttcgggtgttccgcctatatacggc 23426674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 365
Target Start/End: Complemental strand, 33258636 - 33258592
Alignment:
Q  321 ttttagggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
    ||||| |||||||||||||||||||| | | ||||||||||||||    
T  33258636 ttttatggtgtttattttcgggtgtttcacatatatacggcgcct 33258592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 138 - 365
Target Start/End: Complemental strand, 10248497 - 10248268
Alignment:
Q  138 cttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt-cgttggtgg-tgagtagtgacgatgggtgatgttggat 235  Q
    ||||||| |||||||||| |||||||||||||||||  |||||| |||||||| ||||||| |||||| || ||||||||||||||||||| ||| ||||    
T  10248497 cttttcggatgtggctcaactttggtgttgaggacttagagttt-aattttgacgggtgtttcgttggggggtgagtagtgacgatgggtgttgtgggat 10248399  T
Q  236 atcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtg-ttta 334  Q
     |||| ||||||||| ||||||| ||||||||||  |||||||| ||||| || |||||||| | ||||||||||||  ||||| ||||| |||| |||     
T  10248398 gtcgtttttacagtggtcgttttcgtgaaggagtttgttttaggtggtgacgtgtattttggcgggtgttgtcctcaagggtgttttttaaggtgttttt 10248299  T
Q  335 ttttcgggtgttccgcctatatacggcgcct 365  Q
    |||| |||||||||||||||||||| |||||    
T  10248298 ttttagggtgttccgcctatatacgacgcct 10248268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 78 - 365
Target Start/End: Complemental strand, 12198058 - 12197778
Alignment:
Q  78 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggc---tcagctttggtgttgaggactg 174  Q
    |||||||  ||||| ||||||||||||||| |||||| | ||||||||||| | || |||||||||| ||||| |   ||| |||| ||||||||  |||    
T  12198058 ttctttcaatggatcggaggtcgagaggtgatggaagttcaatgatctttcggatatgagcttttcggatgtgccgcctcatctttagtgttgagttctg 12197959  T
Q  175 ggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagtt 274  Q
    ||||||| ||||||        ||| |||| ||||||||||||||| ||||| || |||||||||| |||  |||| |||| ||  |||||| ||| |||    
T  12197958 ggagttt-aatttt--------ttctttgggggtgagtagtgacgacgggtggtgctggatatcgtttttttagtggtcgtgttcatgaaggcgtctgtt 12197868  T
Q  275 ttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
     |||| ||||| || |||||| ||| ||||||||| |||||||||||||||||||||||||||||  |||||||||||||| ||| |||||    
T  12197867 gtaggtggtgacgtgtatttttgtg-gtgttgtccccagaggtgtcttttagggtgtttattttcccgtgttccgcctatagacgacgcct 12197778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 78 - 365
Target Start/End: Complemental strand, 12442486 - 12442206
Alignment:
Q  78 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggc---tcagctttggtgttgaggactg 174  Q
    |||||||  ||||| ||||||||||||||| |||||| | ||||||||||| | || |||||||||| ||||| |   ||| |||| ||||||||  |||    
T  12442486 ttctttcaatggatcggaggtcgagaggtgatggaagttcaatgatctttcggatatgagcttttcggatgtgccgcctcatctttagtgttgagttctg 12442387  T
Q  175 ggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagtt 274  Q
    ||||||| ||||||        ||| |||| ||||||||||||||| ||||| || |||||||||| |||  |||| |||| ||  |||||| ||| |||    
T  12442386 ggagttt-aatttt--------ttctttgggggtgagtagtgacgacgggtggtgctggatatcgtttttttagtggtcgtgttcatgaaggcgtctgtt 12442296  T
Q  275 ttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
     |||| ||||| || |||||| ||| ||||||||| |||||||||||||||||||||||||||||  |||||||||||||| ||| |||||    
T  12442295 gtaggtggtgacgtgtatttttgtg-gtgttgtccccagaggtgtcttttagggtgtttattttcccgtgttccgcctatagacgacgcct 12442206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 77 - 198
Target Start/End: Complemental strand, 17656993 - 17656873
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 176  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||  ||||||||||||  | |||||||| |||||||||| | || ||||    
T  17656993 tttctttcggtggatcggaggtcgataggtggtggaagctgaatgatctttcatataggagcttttcagaggtggctcaactttggtgttcatgattggg 17656894  T
Q  177 agttttaattttgaggggtgtt 198  Q
    || |||||||||||||||||||    
T  17656893 ag-tttaattttgaggggtgtt 17656873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 201 - 365
Target Start/End: Complemental strand, 17656603 - 17656439
Alignment:
Q  201 ttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgt-gaaggagtcagttttaggcggtgatgtatattttggtg 299  Q
    |||| ||||||||||||| ||| | | ||||||||||||| ||| ||||| |||||||| | ||||||||| |||||||  ||||| ||  |||||||||    
T  17656603 ttgggggtgagtagtgacaatgagcggtgttggatatcgtttttgcagtggtcgtttttcttgaaggagtctgttttagatggtgacgtgaattttggtg 17656504  T
Q  300 agtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
     ||||||||||||  ||||| |||||||||||| |||||||||||||||| ||||||||| |||||    
T  17656503 ggtgttgtcctcaagggtgt-ttttagggtgttaattttcgggtgttccgtctatatacgacgcct 17656439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 250
Target Start/End: Complemental strand, 38577777 - 38577606
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg-a 177  Q
    |||||||||||||  ||||||||||| | |||||||||| ||| || ||| | | |||||||||||||| |||| || ||| |||||||| | ||||| |    
T  38577777 tctttcggtggatcagaggtcgagagtttgtggaagctgcatgttcattcggtttggagcttttcgaatatggcgcaacttgggtgttgaagtctgggga 38577678  T
Q  178 gttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtg 250  Q
    |||||| ||||| || |||||| |||| | |||||||||||||||| ||||  ||||||  ||||||||||||    
T  38577677 gtttta-ttttgtggagtgttctttggggatgagtagtgacgatggatgattgtggatactgtgtttacagtg 38577606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 146 - 332
Target Start/End: Complemental strand, 43312558 - 43312375
Alignment:
Q  146 atgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttta 245  Q
    ||||| |||||||||| ||||||| ||| ||||||| || |||||| | | |||||||| || ||||||||||||||  || ||| ||||||||| ||||    
T  43312558 atgtgactcagctttgatgttgagaactaggagttt-aactttgagagtt-ttcgttgggggcgagtagtgacgatgtatggtgtgggatatcgttttta 43312461  T
Q  246 cagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtt 332  Q
    ||||| ||||||||||| ||||||| | |||||| |||||  | ||||||| || |||||||  |||| ||||| ||||||| ||||    
T  43312460 cagtggtcgtttttgtgtaggagtctgatttaggtggtgacatgtattttgatgggtgttgt-ttcagcggtgttttttaggatgtt 43312375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 288
Target Start/End: Original strand, 20138519 - 20138726
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactggg 176  Q
    ||||||||||||| |||||||| |||||  |||  ||||| |||||| ||| | |||| ||| |||||| |||| | | |||| ||||||| || |||||    
T  20138519 tctttcggtggatcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtgacccggcttgggtgttggggtctggg 20138618  T
Q  177 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagtttt 276  Q
    ||||||| ||||||||| ||||| |||  ||||||||||||||||||  | || |||||| ||||||||||||||| | |||| |   |||||| |||||    
T  20138619 agttttatttttgaggg-tgttctttgtaggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgatttttt---ggagtctgtttt 20138714  T
Q  277 aggcggtgatgt 288  Q
    ||| ||||||||    
T  20138715 aggtggtgatgt 20138726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 81 - 252
Target Start/End: Complemental strand, 31207348 - 31207177
Alignment:
Q  81 tttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactgggag 178  Q
    ||||||||||| |||||||| |||||  |||  |||||||||| | ||| | |||| ||| |||||| ||||||||||||| |||||||  |  ||||||    
T  31207348 tttcggtggatcggaggtcgcgaggtttgtgatagctgaatgacccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggagtatgggag 31207249  T
Q  179 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgct 252  Q
    ||||| ||||||||| ||||| |||  ||||||||||||||||||| |||| ||||||  ||||||||||||||    
T  31207248 tttta-ttttgaggg-tgttctttgtgggtgagtagtgacgatgggcgatggtggatactgtgtttacagtgct 31207177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 210 - 365
Target Start/End: Complemental strand, 8862481 - 8862324
Alignment:
Q  210 agtagtgacgatgggtgatgtt-ggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtc 308  Q
    ||||||||||| | ||| |||| |||||| || |||||| || | ||| | ||| | |||||||||||||| ||||| || |||||| ||| ||||||||    
T  8862481 agtagtgacgacgtgtggtgtttggatattgtttttacaatggttgttctcgtgtaagagtcagttttaggtggtgacgtgtatttttgtgggtgttgtc 8862382  T
Q  309 ctcagaggtgtcttttagggtgttta-ttttcgggtgttccgcctatatacggcgcct 365  Q
    ||  | ||||| ||||| |||||||| ||||||| ||||||| |||||||||||||||    
T  8862381 cttcggggtgttttttatggtgtttatttttcggatgttccgtctatatacggcgcct 8862324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 79 - 247
Target Start/End: Complemental strand, 35816230 - 35816066
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 178  Q
    ||||| ||||||| |||||| ||||| | |||||||||| ||| || ||| | || ||| |||||||||||||||||| || | |||||| | | | |||    
T  35816230 tcttttggtggatcggaggttgagagattgtggaagctgcatgttcattcggttaagagtttttcgaatgtggctcagtttggatgttgaagtcagagag 35816131  T
Q  179 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttaca 247  Q
    ||    ||||||||||||||| |||| |||||||||||| |||||||| |  ||||||  |||||||||    
T  35816130 tt----ttttgaggggtgttctttgggggtgagtagtgatgatgggtggttgtggatactgtgtttaca 35816066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 259
Target Start/End: Complemental strand, 41893322 - 41893210
Alignment:
Q  145 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 244  Q
    ||||||||||||||| |||||||||| ||||||||| || |||| |||| ||||| |||  ||||||||||||||||||  | || |||||| |||||||    
T  41893322 aatgtggctcagcttgggtgttgaggtctgggagttcta-ttttcaggg-tgttctttgtgggtgagtagtgacgatggtcggtggtggataccgtgttt 41893225  T
Q  245 acagtgctcgttttt 259  Q
    ||||| || ||||||    
T  41893224 acagttcttgttttt 41893210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 259
Target Start/End: Complemental strand, 37986846 - 37986666
Alignment:
Q  79 tctttcggtggattggaggtcgagagg-tggtggaagctgaatgatctttcagctaggagcttttcg-aatgtggctcagctttggtgttgaggactggg 176  Q
    ||||||||||| | |||||||| |||| | |||  |||||  ||||| ||| | |||| ||| |||| ||||||||||||||| ||||||  || |||||    
T  37986846 tctttcggtggttcggaggtcgcgaggtttgtgatagctgcctgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgtttcggtctggg 37986747  T
Q  177 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 259  Q
    |||||||  ||||  |||||||| |||  |||||||| |||||||||||| || | |||| |||||||||| |||| ||||||    
T  37986746 agtttta--tttggagggtgttctttgtgggtgagtaatgacgatgggtggtggtagataccgtgtttacaatgcttgttttt 37986666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 132 - 222
Target Start/End: Complemental strand, 15821313 - 15821224
Alignment:
Q  132 taggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatg 222  Q
    |||||||||||||||||||||||||||  | |||||| | ||||||||||| ||||||||| |||||| || |  |||||||||| |||||    
T  15821313 taggagcttttcgaatgtggctcagctcggatgttgaagtctgggagtttt-attttgaggagtgttcttttggagtgagtagtggcgatg 15821224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 266 - 359
Target Start/End: Complemental strand, 41791070 - 41790977
Alignment:
Q  266 gagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttt-tagggtgtttattttcgggtgttccgcctatatacg 359  Q
    |||||||||||||| |||||||| |||||||||| | |||||||| |   |||||||| | |||| |||||||| ||||||||||||||||||||    
T  41791070 gagtcagttttagggggtgatgtttattttggtgggggttgtccttatgagtgtctttattgggt-tttatttttgggtgttccgcctatatacg 41790977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 250
Target Start/End: Original strand, 9519627 - 9519764
Alignment:
Q  113 agctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgagga-ctgggagttttaattttgaggggtgttcgttggtggtga 210  Q
    ||||| |||||| ||| | |||| ||| |||||| | ||||||||||| ||||||| ||  ||| |||||||| ||||||||| ||||| |||  |||||    
T  9519627 agctgcatgatcattcggttaggtgctcttcgaaatatggctcagcttgggtgttgggggtctgagagtttta-ttttgaggg-tgttctttgtgggtga 9519724  T
Q  211 gtagtgacgatgggtgatgttggatatcgtgtttacagtg 250  Q
    |||||||||||||| | || |||||| |||||||||||||    
T  9519725 gtagtgacgatgggcggtggtggataccgtgtttacagtg 9519764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 8862563 - 8862505
Alignment:
Q  106 tggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtg 164  Q
    ||||||||||||||||||||||| | || || ||||||  |||||||||||||||||||    
T  8862563 tggtggaagctgaatgatctttcggatatgaacttttcagatgtggctcagctttggtg 8862505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 310
Target Start/End: Complemental strand, 30235935 - 30235889
Alignment:
Q  264 aggagtcagttttaggcggtgatgtatattttggtgagtgttgtcct 310  Q
    |||||||||||||||| |||||||| |||||||||| ||||||||||    
T  30235935 aggagtcagttttagggggtgatgtttattttggtgggtgttgtcct 30235889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 259
Target Start/End: Complemental strand, 24995348 - 24995202
Alignment:
Q  113 agctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgagga-ctgggagttttaattttgaggggtgttcgttggtggtga 210  Q
    ||||| |||||| ||| | |||| ||| |||||| | ||||||||||| ||||||| ||  || ||||||||| ||||||||| ||||| |||   ||||    
T  24995348 agctgcatgatccttcggttaggtgctcttcgaaatatggctcagcttgggtgttgggggtctaggagtttta-ttttgaggg-tgttctttgtgcgtga 24995251  T
Q  211 gtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 259  Q
    |||||||||||||| | || |||||| |||||||||| |||| ||||||    
T  24995250 gtagtgacgatgggcggtggtggataccgtgtttacaatgcttgttttt 24995202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 10248544 - 10248494
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatcttt 127  Q
    ||||||| ||||||| ||||| || ||||||||||||||||| ||||||||    
T  10248544 tttcttttggtggatcggaggccgcgaggtggtggaagctgattgatcttt 10248494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 338
Target Start/End: Complemental strand, 22325931 - 22325826
Alignment:
Q  232 ggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgt 331  Q
    ||||||||| |||||| || |||||||||| |||||||| ||||||   |||||  |||||||||||| |||| ||| | |  ||||| ||||||| |||    
T  22325931 ggatatcgtttttacaatggtcgtttttgttaaggagtctgttttatatggtgacctatattttggtgggtgtcgtcattatgggtgt-ttttaggatgt 22325833  T
Q  332 ttatttt 338  Q
    |||||||    
T  22325832 ttatttt 22325826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 252
Target Start/End: Complemental strand, 34388925 - 34388822
Alignment:
Q  146 atgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttta 245  Q
    |||||||||||||| ||||||| ||  || |||||||| ||||||||| ||||| |||  |||||||||||||||| || | || |||||| ||||||||    
T  34388925 atgtggctcagcttgggtgttggggtatgagagtttta-ttttgaggg-tgttctttgtgggtgagtagtgacgataggcggtggtggata-cgtgttta 34388829  T
Q  246 cagtgct 252  Q
    || ||||    
T  34388828 cattgct 34388822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 12898195 - 12898120
Alignment:
Q  145 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatg 222  Q
    ||||||||||||||| ||||||| || ||  |||||||| ||||||||| ||||| |||  |||||||||||||||||    
T  12898195 aatgtggctcagcttgggtgttggggtcttagagtttta-ttttgaggg-tgttctttgtgggtgagtagtgacgatg 12898120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 16457336 - 16457283
Alignment:
Q  206 ggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 259  Q
    ||||||||||||||||||  | || |||||| ||||||||||||||| ||||||    
T  16457336 ggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgttttt 16457283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 17720696 - 17720647
Alignment:
Q  78 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatcttt 127  Q
    ||||||||||||| | ||||| ||||||||||||||| ||| ||||||||    
T  17720696 ttctttcggtggacttgaggttgagaggtggtggaagttgattgatcttt 17720647  T

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Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 288
Target Start/End: Original strand, 36631039 - 36631123
Alignment:
Q  201 ttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgt 288  Q
    |||| |||||||||| |||||||| | || |||||| ||||||||||||| | |||||| |   |||||| |||||||| ||||||||    
T  36631039 ttgggggtgagtagttacgatgggcggtggtggataccgtgtttacagtgtttgttttttt---ggagtctgttttaggtggtgatgt 36631123  T

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Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 365
Target Start/End: Complemental strand, 5221553 - 5221506
Alignment:
Q  317 tgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
    ||||||||  ||||||| |||| ||||||||||||||||||||||||||    
T  5221553 tgtcttttttggtgtttctttt-gggtgttccgcctatatacggcgcct 5221506  T

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Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 10552609 - 10552645
Alignment:
Q  327 ggtgtttattttcgggtgttccgcctatatacggcgc 363  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  10552609 ggtgtttgttttcggatgttccgcctatatacggcgc 10552645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 77 - 359
Target Start/End: Complemental strand, 41117958 - 41117677
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 176  Q
    ||||||||| |||||  |||||||||||||||||||||||||||||||||||   |||||||||| || | ||||||||| ||||||||| | ||  |||    
T  41117958 tttctttcgatggatcagaggtcgagaggtggtggaagctgaatgatctttcgaataggagctttgcggaggtggctcaggtttggtgttcatgatcggg 41117859  T
Q  177 agttttaattttgaggggtgttcgttg---gtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagt 273  Q
    ||||||| || |||||||||||  |     | |||||||| ||||||||||||  |||||||||||| ||||||  | | ||||| ||| | ||||| ||    
T  41117858 agtttta-ttctgaggggtgtttttctaaaggggtgagtaatgacgatgggtg--gttggatatcgtttttacaacggttgttttcgtgcatgagtctgt 41117762  T
Q  274 tttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacg 359  Q
    | |||| |||||| | |||||||||| ||||||||||||  |||||  ||||||||||||||||||||||||||||||||||||||    
T  41117761 tctaggtggtgatatgtattttggtgggtgttgtcctcat-ggtgttatttagggtgtttattttcgggtgttccgcctatatacg 41117677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 77 - 294
Target Start/End: Original strand, 48098423 - 48098641
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 176  Q
    ||||||||| ||||| | |||||||||||||||||||| |||| |||||||||| ||||||||||||| |||||||||| |||||||||| | |||||||    
T  48098423 tttctttcgatggatcgaaggtcgagaggtggtggaagatgaacgatctttcagataggagcttttcggatgtggctcaactttggtgtttaagactggg 48098522  T
Q  177 agttttaattttgaggggtg----ttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcag 272  Q
    || |||| |||| |||||||    ||| |||| ||||||||||||||| ||||  || |||||||||| ||||||||| ||||||||||||| ||||  |    
T  48098523 ag-tttattttttaggggtgtattttctttgggggtgagtagtgacgacgggttgtgatggatatcgtttttacagtggtcgtttttgtgaaagagt--g 48098619  T
Q  273 ttttaggcggtgatgtatattt 294  Q
    ||||||| ||||| || |||||    
T  48098620 ttttaggtggtgacgtgtattt 48098641  T

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Target: chr4; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 96 - 365
Target Start/End: Complemental strand, 19311346 - 19311069
Alignment:
Q  96 ggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaat--------tt 187  Q
    |||||||||||||||||||||| |||||||||  | || |||||||| |||||||| || |||||||||||||||||| |||||| | |         ||    
T  19311346 ggtcgagaggtggtggaagctgtatgatcttttggttaagagctttttgaatgtggttcggctttggtgttgaggactaggagttcttacggtgctcgtt 19311247  T
Q  188 tgagggg-tgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgat 286  Q
    ||||||| | ||| |||| |||||| ||||||| |||  ||||||||||||||| ||||||||||||||||| |||||||| || ||||  || |||||     
T  19311246 tgagggggtattctttgggggtgagcagtgacggtggaggatgttggatatcgtttttacagtgctcgttttcgtgaaggaatctgtttatggtggtgac 19311147  T
Q  287 gtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
    || |||||||||| ||||| ||| ||| || || |||||||||||||| |||||| |||||||||||| ||||| ||||    
T  19311146 gtgtattttggtgggtgttatccccaggggagt-ttttagggtgtttaatttcggatgttccgcctatttacggtgcct 19311069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 77 - 365
Target Start/End: Complemental strand, 16833012 - 16832723
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 176  Q
    |||||||| |||| | ||| ||| ||||||| | |||||||||||||||||  | || |||||||||| |||||||||| |||||||||| | ||||| |    
T  16833012 tttctttcagtggttcggaagtcaagaggtgattgaagctgaatgatctttgggatatgagcttttcggatgtggctcaactttggtgttcaagactgtg 16832913  T
Q  177 agttttaattttgaggggtgtt----cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt-gtgaaggagtca 271  Q
    ||||| ||||||||||||||||    | |||| ||||||||||||||| ||||| ||||||||||| | ||||||| | |||||||| ||| |||| |      
T  16832912 agttt-aattttgaggggtgttttttctttgg-ggtgagtagtgacgacgggtggtgttggatatcttttttacagcggtcgtttttcgtgcaggaatat 16832815  T
Q  272 gttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
    |||||||| ||||| || || ||||||| |||||||||||||  | || ||||||||||||||||||  |||||||||||||||| | ||||||    
T  16832814 gttttaggtggtgacgttta-tttggtgggtgttgtcctcaggagagt-ttttagggtgtttattttttggtgttccgcctatatgcagcgcct 16832723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 77 - 365
Target Start/End: Complemental strand, 38637224 - 38636937
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 176  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| || ||||||| |  | | || ||| |||||||||| | || ||||    
T  38637224 tttcttttggtggatcggaggtcgagaggtggtggaagctgaatgatctttcagataagagctttgccgaggcggttcaactttggtgttcaagattggg 38637125  T
Q  177 agttttaattttgaggggtgttcgtt---ggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagt 273  Q
    ||||||| | |  |||||||||  |    || |||||||||||||||||||||  |||||||||| | ||||||| | | ||||| ||||||||||  ||    
T  38637124 agttttagtata-aggggtgtttttctaagggggtgagtagtgacgatgggtg--gttggatatcatttttacagcggttgttttcgtgaaggagtttgt 38637028  T
Q  274 tttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
    |||||| |||||  | |||||| ||| ||||||||||| | ||| |  |||| ||||||||||||| ||||||||||||| |||||||||||    
T  38637027 tttaggtggtgacatgtattttcgtgggtgttgtcctcgggggttttatttaaggtgtttattttcaggtgttccgccta-atacggcgcct 38636937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 79 - 250
Target Start/End: Complemental strand, 31050648 - 31050478
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 178  Q
    |||||| |||||| |||||||||||||| |||||||||| ||| || ||| | |||||||||||||| ||||||| ||||| |||||||| | ||||  |    
T  31050648 tctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttaggagcttttcgattgtggctaagcttgggtgttgaagtctggctg 31050549  T
Q  179 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtg 250  Q
    |||| |||||||||||||||| |||| |||||||||||||||||| ||||| ||||| | ||||||||||||    
T  31050548 tttt-attttgaggggtgttccttgggggtgagtagtgacgatggatgatggtggatgttgtgtttacagtg 31050478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 78 - 358
Target Start/End: Complemental strand, 19815210 - 19814928
Alignment:
Q  78 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggga 177  Q
    |||||||||||||  |||||||||||| ||||||||||| ||||||||||| | ||||| ||||||  |||||||| | |||||||||||||||||| ||    
T  19815210 ttctttcggtggaccggaggtcgagagatggtggaagctaaatgatctttcggataggaacttttccgatgtggctaaactttggtgttgaggactgaga 19815111  T
Q  178 gttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagtttta 277  Q
    | |||||| |||||  |||||| |||| ||||||||||||| | || || | ||||||||| | ||||| ||| || |||| ||||||  ||| |||| |    
T  19815110 g-tttaatcttgagaagtgttctttgggggtgagtagtgacaacggatggtattggatatcatttttaccgtggtcattttcgtgaagacgtctgtttga 19815012  T
Q  278 gg---cggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatac 358  Q
    ||    ||||| || | |||||||| ||||||||||   | |||||||||| | |||||||||| |||||||| || |||||||    
T  19815011 ggtactggtgacgtgttttttggtgggtgttgtccttgaaagtgtcttttatgatgtttatttttgggtgttctgcttatatac 19814928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 77 - 313
Target Start/End: Original strand, 25753262 - 25753500
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 176  Q
    ||||||||||||||| ||||||||| |||  ||||||||||||||||||||| |  || ||||||| | |||||| ||| ||||| |||| |||||||      
T  25753262 tttctttcggtggatcggaggtcgataggcagtggaagctgaatgatctttcggagagaagctttttggatgtggttcaactttgatgttcaggactgaa 25753361  T
Q  177 agttttaattttgaggggtg---ttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagt 273  Q
    || |||||||||||||||||   ||| |||| |||||||||||||||||  |||||||||||| ||  |||||||||  | |||| ||||||||||  ||    
T  25753362 ag-tttaattttgaggggtgtttttctttgggggtgagtagtgacgatgaatgatgttggataccgattttacagtggcccttttcgtgaaggagtttgt 25753460  T
Q  274 tttaggcggtgatgtatattttggtgagtgttgtcctcag 313  Q
    |||||| | |||  | |||||||||| |||||||||||||    
T  25753461 tttaggtgatgacttgtattttggtgggtgttgtcctcag 25753500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 79 - 266
Target Start/End: Complemental strand, 35341325 - 35341141
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 178  Q
    ||||||||||||| |||| ||||||||| |||||||||| ||| || ||||| || |||||||||||||||||||||| ||||||||||| |  ||||||    
T  35341325 tctttcggtggatcggagttcgagaggttgtggaagctgcatgttcattcagttatgagcttttcgaatgtggctcag-tttggtgttgaagtttgggag 35341227  T
Q  179 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaagg 266  Q
    |||| ||||||||||||||||  ||| ||||||||||||||||||||| |   |||||  |||||||||||| | |||||||| ||||    
T  35341226 tttt-attttgaggggtgttctctgg-ggtgagtagtgacgatgggtggttgcggatactgtgtttacagtgtttgtttttgttaagg 35341141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 78 - 265
Target Start/End: Original strand, 19673191 - 19673377
Alignment:
Q  78 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggga 177  Q
    |||||||||||||| |  |||||| || ||||||||||| |||||| |||  | || || ||||||| |||||||| | |||||||||||||||||| ||    
T  19673191 ttctttcggtggatcgacggtcgatagatggtggaagctaaatgatattttggatatgaacttttcggatgtggctaaactttggtgttgaggactgaga 19673290  T
Q  178 gttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaag 265  Q
    | ||||||||||||| |||||| |||| ||||||||||||||| || || |||||||||| |  ||||||||| || |||| ||||||    
T  19673291 g-tttaattttgaggagtgttctttgggggtgagtagtgacgacggatggtgttggatattgcttttacagtggtcattttcgtgaag 19673377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 116 - 359
Target Start/End: Original strand, 49747657 - 49747900
Alignment:
Q  116 tgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtg--ttcgttggtggtgagta 213  Q
    ||||||||||||||  || |||||||||| |  ||||| |||||||||||  |||| ||| ||||| | ||| ||| |||   ||| || | ||||||||    
T  49747657 tgaatgatctttcatatatgagcttttcggagatggcttagctttggtgtcaaggattggaagttt-attttagagaggttgtttctttaggggtgagta 49747755  T
Q  214 gtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcag 313  Q
    ||||| ||||| | |||||||| |||| |||||| || ||||||| ||||| ||||| |||||||| |||||  |  ||||||||| |||||||||||||    
T  49747756 gtgacaatgggcggtgttggat-tcgtttttacaatggtcgttttcgtgaaagagtctgttttaggtggtgacatgaattttggtgggtgttgtcctcag 49747854  T
Q  314 aggtgtcttttagggtgtttattttcgggtgttccgcctatatacg 359  Q
    |||||| ||||| |||||||||||| || |||||||| ||||||||    
T  49747855 aggtgttttttatggtgtttatttttggatgttccgcatatatacg 49747900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 77 - 198
Target Start/End: Original strand, 49528162 - 49528282
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 176  Q
    ||||||||||||||| |||||||| ||||||||||||| ||||||||||||| | ||| |||||| || |||||| |||||||||||||| | ||||| |    
T  49528162 tttctttcggtggatcggaggtcgggaggtggtggaagatgaatgatctttcggatagaagctttgcggatgtggttcagctttggtgttcaagactgag 49528261  T
Q  177 agttttaattttgaggggtgtt 198  Q
    |||||| |||||||||||||||    
T  49528262 agtttt-attttgaggggtgtt 49528282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 79 - 224
Target Start/End: Original strand, 2825877 - 2826020
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 178  Q
    ||||||||||||| ||||||| |||||| |||||||||| ||| || ||| | ||||||||||||||| |||| |||| || |||||||| |  ||||||    
T  2825877 tctttcggtggatcggaggtctagaggttgtggaagctgcatgttcattcggttaggagcttttcgaaggtggttcagtttgggtgttgaagtttgggag 2825976  T
Q  179 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatggg 224  Q
    |||| ||||||||||||||||  ||| |||||||||||||||||||    
T  2825977 tttt-attttgaggggtgttctctgg-ggtgagtagtgacgatggg 2826020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 77 - 299
Target Start/End: Complemental strand, 22811151 - 22810929
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 176  Q
    ||||| ||| |||||||||||| ||||||||||||||| ||||   ||||   | |||||| ||| || ||||||||||||||||||||| ||||| | |    
T  22811151 tttctctcgatggattggaggttgagaggtggtggaagttgaaatgtcttctggttaggagttttgcggatgtggctcagctttggtgttcaggacggag 22811052  T
Q  177 agttttaattttgaggggtgtt--cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagtt 274  Q
     ||||||  ||| || ||| ||  | |||| |||||||||||||||||| ||  || ||||||||| ||||||||| ||| ||| |||||| |||| |||    
T  22811051 ggttttatcttttagaggttttttctttgggggtgagtagtgacgatggatg--gtaggatatcgtttttacagtggtcggtttcgtgaagcagtctgtt 22810954  T
Q  275 ttaggcggtgatgtatattttggtg 299  Q
    ||||| ||||| || ||||||||||    
T  22810953 ttaggaggtgacgtgtattttggtg 22810929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 207 - 359
Target Start/End: Complemental strand, 39420896 - 39420745
Alignment:
Q  207 gtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttg 306  Q
    |||||||||||||| ||||| ||||||||||||| | ||| ||| | ||| | ||| |||||||||||||||  ||||| || |||||||||| |||||     
T  39420896 gtgagtagtgacgacgggtggtgttggatatcgtttatacggtggttgttctcgtgtaggagtcagttttagatggtgacgtgtattttggtg-gtgtta 39420798  T
Q  307 tcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacg 359  Q
    | ||||   |||| ||||| |||||| ||||||||||||||||||||||||||    
T  39420797 tgctcatgagtgttttttatggtgttcattttcgggtgttccgcctatatacg 39420745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 81 - 167
Target Start/End: Complemental strand, 39421000 - 39420914
Alignment:
Q  81 tttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttg 167  Q
    ||||||||||| |||| |||||||||||||||| |||| |||| |||||| |||||||||||| ||||||||| ||||| |||||||    
T  39421000 tttcggtggatcggagatcgagaggtggtggaaactgattgatatttcagataggagcttttcaaatgtggcttagcttcggtgttg 39420914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 53823412 - 53823314
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagc-taggagcttttcgaatgtggctcagctttggtgttgaggactg 174  Q
    ||||||||||| ||| | |||||||||||||||||||| ||| ||||||||  |  ||||||||||| | |||||||||||||||||||||||||||||    
T  53823412 tttctttcggttgatcgaaggtcgagaggtggtggaagttgattgatctttttggataggagcttttaggatgtggctcagctttggtgttgaggactg 53823314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 2061729 - 2061677
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttca 129  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  2061729 tttctttcggtggatcggaggtcgagaggtggtggaagttgaatgatctttca 2061677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 79 - 258
Target Start/End: Original strand, 8255120 - 8255299
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcg-aatgtggctcagctttggtgttgaggactggg 176  Q
    ||||||||||||| |||||||| |||||  |||  |||||  |||||  |||| |||| ||| |||| ||||||||||||||| ||||||  || ||| |    
T  8255120 tctttcggtggatcggaggtcgcgaggtttgtgatagctgcttgatccatcagttaggtgctcttcgtaatgtggctcagcttgggtgttagggtctgtg 8255219  T
Q  177 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttt 258  Q
    ||||||| ||||||||| ||||| |||  |||||||||||||||||||   || ||||||  |||||||||||||| |||||    
T  8255220 agtttta-ttttgaggg-tgttctttgtgggtgagtagtgacgatgggatgtggtggatactgtgtttacagtgcttgtttt 8255299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 79 - 258
Target Start/End: Original strand, 8268538 - 8268717
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcg-aatgtggctcagctttggtgttgaggactggg 176  Q
    ||||||||||||| |||||||| |||||  |||  |||||  |||||  |||| |||| ||| |||| ||||||||||||||| ||||||  || ||| |    
T  8268538 tctttcggtggatcggaggtcgcgaggtttgtgatagctgcttgatccatcagttaggtgctcttcgtaatgtggctcagcttgggtgttagggtctgtg 8268637  T
Q  177 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttt 258  Q
    ||||||| ||||||||| ||||| |||  |||||||||||||||||||   || ||||||  |||||||||||||| |||||    
T  8268638 agtttta-ttttgaggg-tgttctttgtgggtgagtagtgacgatgggatgtggtggatactgtgtttacagtgcttgtttt 8268717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 339
Target Start/End: Complemental strand, 53823281 - 53823151
Alignment:
Q  206 ggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgtt 305  Q
    ||||||||||| || |||||| ||| ||||||||| ||||  |||  | |||||||||||||||| |||   || | ||| || |||||||||| |||||    
T  53823281 ggtgagtagtgtcggtgggtggtgtgggatatcgtttttatggtggacatttttgtgaaggagtctgtt---ggtgatgacgtgtattttggtgggtgtt 53823185  T
Q  306 gtcctcagaggtgtcttttagggtgtttattttc 339  Q
     ||||||| ||| | |||||||||||||||||||    
T  53823184 atcctcaggggtattttttagggtgtttattttc 53823151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 321 - 365
Target Start/End: Original strand, 28967209 - 28967253
Alignment:
Q  321 ttttagggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||    
T  28967209 ttttagggtgtttattttcaggtgttccgcctatatacagcgcct 28967253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 310
Target Start/End: Complemental strand, 43373910 - 43373864
Alignment:
Q  264 aggagtcagttttaggcggtgatgtatattttggtgagtgttgtcct 310  Q
    |||||||||||||||| |||||||| |||||||||| ||||||||||    
T  43373910 aggagtcagttttagggggtgatgtttattttggtgggtgttgtcct 43373864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 358
Target Start/End: Original strand, 48098645 - 48098677
Alignment:
Q  326 gggtgtttattttcgggtgttccgcctatatac 358  Q
    |||||||||||||||||||||||||||||||||    
T  48098645 gggtgtttattttcgggtgttccgcctatatac 48098677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 259
Target Start/End: Complemental strand, 8706061 - 8705952
Alignment:
Q  148 gtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttaca 247  Q
    |||||||||||| ||||||| || ||  |||||||| ||||||||| ||||| |||  |||| ||||||||||||||   || ||||||  |||||||||    
T  8706061 gtggctcagcttgggtgttggggtctaagagtttta-ttttgaggg-tgttctttgtgggtgggtagtgacgatgggcagtggtggatactgtgtttaca 8705964  T
Q  248 gtgctcgttttt 259  Q
    ||||| ||||||    
T  8705963 gtgcttgttttt 8705952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 358
Target Start/End: Complemental strand, 2061627 - 2061542
Alignment:
Q  273 ttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatac 358  Q
    ||||||| |||||  | ||||||| || |||||| |||||| ||| | |||||| ||||||||| || | ||||||||||||||||    
T  2061627 ttttaggtggtgacttgtattttgatgggtgttgccctcaggggtattttttagtgtgtttattatcagatgttccgcctatatac 2061542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 265
Target Start/End: Original strand, 20464796 - 20464869
Alignment:
Q  192 gggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaag 265  Q
    |||||||  |||| ||||||||||||||||||| | || |||||| ||||||||||| | | |||||| |||||    
T  20464796 gggtgttatttgggggtgagtagtgacgatgggcggtggtggataccgtgtttacagggtttgtttttttgaag 20464869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 363
Target Start/End: Original strand, 25754199 - 25754251
Alignment:
Q  310 tcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgc 363  Q
    |||||||||| ||||| ||||||||||||| | ||||||| |||||||||||||    
T  25754199 tcagaggtgt-ttttatggtgtttattttcagatgttccgtctatatacggcgc 25754251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 30964624 - 30964702
Alignment:
Q  171 actgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgc 251  Q
    ||||||||||||| ||||||||| ||||| |||  |||||||||||| |||||| | || || ||||||| ||||||||||    
T  30964624 actgggagtttta-ttttgaggg-tgttctttgtgggtgagtagtgatgatgggcggtggtgaatatcgtatttacagtgc 30964702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 77 - 257
Target Start/End: Original strand, 14879526 - 14879708
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 176  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||| | ||||||||| | | |||||    
T  14879526 tttctttcggtggataggaggtcgagaggtggtggaagcttaatgatctttcagataggagcttttcggatgtggctcgggtttggtgttcaagtctggg 14879625  T
Q  177 agttttaattttgaggggtgtt---cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttt 257  Q
    ||||| ||||||||||||||||   | || | ||||| ||||||||||| ||| ||||||||||||| ||| ||||| ||||||    
T  14879626 agttt-aattttgaggggtgtttttctttcggggtgaatagtgacgatgtgtggtgttggatatcgttttttcagtggtcgttt 14879708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 79 - 250
Target Start/End: Complemental strand, 23328337 - 23328167
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 178  Q
    ||||||||||||| |||||||||||||| |||||||||   || || ||| | |||||||||||||||||||||||||||| |||||||| | |||||||    
T  23328337 tctttcggtggatcggaggtcgagaggttgtggaagctccttgttcattcggttaggagcttttcgaatgtggctcagcttgggtgttgaagtctgggag 23328238  T
Q  179 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtg 250  Q
    |||| |||||||| ||||||| |||| ||||||||||||||||||||| |  ||||||| ||| ||||||||    
T  23328237 tttt-attttgagtggtgttctttgggggtgagtagtgacgatgggtggttgtggatattgtgcttacagtg 23328167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 88 - 308
Target Start/End: Original strand, 37123482 - 37123703
Alignment:
Q  88 ggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattt 187  Q
    |||| |||| |||| ||||||||||||||| ||||||||||||  | ||||||||||| ||||||||||||||| ||||  |||||| |||||| |||||    
T  37123482 ggatcggagttcgataggtggtggaagctgtatgatctttcagacatgagcttttcga-tgtggctcagctttgatgttctggactgagagttt-aattt 37123579  T
Q  188 tgaggggtgttcgt---tggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtg 284  Q
     ||||||||||| |   ||| ||||||||||||| |  |||| ||||||||||||| ||||||||| ||||||| |||||| ||||  |||||   ||||    
T  37123580 ggaggggtgttcatctttggcggtgagtagtgacaacaggtggtgttggatatcgtttttacagtggtcgttttcgtgaagaagtctattttatatggtg 37123679  T
Q  285 atgtatattttggtgagtgttgtc 308  Q
    |||| |||||||||| ||||||||    
T  37123680 atgtgtattttggtgggtgttgtc 37123703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 77 - 363
Target Start/End: Complemental strand, 28937705 - 28937427
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 176  Q
    ||||||||||||||| ||||||| |||| |||||||||||||||||| ||||||  |||||||||| | |||||||||| ||||| |||| ||| || ||    
T  28937705 tttctttcggtggatcggaggtcaagagatggtggaagctgaatgatgtttcagggaggagctttttggatgtggctca-ctttgatgttcaggtctagg 28937607  T
Q  177 agttttaattttgaggggtg----ttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcag 272  Q
    || |||  |||| |||||||    ||  |||| ||||||||||| ||||||||| | ||||||||||| ||||||||| ||  ||| ||||||| ||| |    
T  28937606 ag-tttgttttttaggggtgttttttacttggaggtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcactttcgtgaaggggtctg 28937508  T
Q  273 ttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgc 363  Q
    ||||||| ||        ||||||||| |||||||| |  | ||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  28937507 ttttaggtgg--------attttggtgggtgttgtcat-tggggtgt-ttttagggtgtttattttcgggtgttccgcttatatacggcgc 28937427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 97 - 365
Target Start/End: Original strand, 4170855 - 4171122
Alignment:
Q  97 gtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtg 196  Q
    |||| ||||||||||||||| ||||||||||  | ||||||||||    ||||||||||||||||||||| ||||||| |||||||| ||| ||||||||    
T  4170855 gtcgggaggtggtggaagcttaatgatctttggg-taggagctttggagatgtggctcagctttggtgttaaggactgagagttttacttt-gaggggtg 4170952  T
Q  197 ttcgttg---gtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatatt 293  Q
    ||  | |   | |||||||||||||||||| ||  |||||||||| | | |||| || || |||| |||||||||||  ||||||| | ||| |||||||    
T  4170953 tttttagaagggggtgagtagtgacgatggatg--gttggatatcatttatacaatggtcattttcgtgaaggagtctattttaggtgatgacgtatatt 4171050  T
Q  294 ttg-gtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
    ||  ||| ||||||||||||  | ||| ||||||||||||||||||| ||||||||||||||||||| |||||    
T  4171051 ttttgtgggtgttgtcctcaatgatgt-ttttagggtgtttattttcaggtgttccgcctatatacgacgcct 4171122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 79 - 250
Target Start/End: Original strand, 45398890 - 45399060
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 178  Q
    ||||||| ||||| |||||||||||||| |||||||||| ||| || ||| | || |||||||||||||||||| || ||| |||||||| |  ||||||    
T  45398890 tctttcgatggatcggaggtcgagaggttgtggaagctgcatgttcattcggttatgagcttttcgaatgtggcgcaacttaggtgttgaagtttgggag 45398989  T
Q  179 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtg 250  Q
    || || ||||| |||||||||||||| |||||||||||||||||| ||||  ||||||| ||||||||||||    
T  45398990 ttcta-ttttgtggggtgttcgttgggggtgagtagtgacgatggatgattgtggatattgtgtttacagtg 45399060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 107 - 359
Target Start/End: Complemental strand, 50519047 - 50518798
Alignment:
Q  107 ggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt---cgttg 203  Q
    ||||||||||||||| |||||  | |||||| |||| || |||||||||||||||||||| |||||  ||| ||| | |||| |||||||||   | |||    
T  50519047 ggtggaagctgaatggtcttttggttaggagttttt-gattgtggctcagctttggtgttcaggacgaggaattt-attttttaggggtgtttttctttg 50518950  T
Q  204 gtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtg 303  Q
    | |||||||||||||||||| |   ||| |||||||| ||||||||| | || |  ||||||||||| |||||||  ||||| || ||||||| || |||    
T  50518949 gaggtgagtagtgacgatggatc--gttagatatcgtttttacagtggtggtatc-gtgaaggagtctgttttagatggtgaggtgtattttgttgggtg 50518853  T
Q  304 ttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacg 359  Q
    | |||||||  ||||| |||||||||||||||||||||||||||||||||||||||    
T  50518852 tggtcctcatgggtgt-ttttagggtgtttattttcgggtgttccgcctatatacg 50518798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 79 - 250
Target Start/End: Complemental strand, 40023559 - 40023389
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 178  Q
    |||||||||||||  |||| || ||||| |||||||||| ||| || ||| | |||||||||||||||||||||||||||  |||||||  | |||||||    
T  40023559 tctttcggtggatcagaggacgggaggttgtggaagctgcatgttcattcggttaggagcttttcgaatgtggctcagctagggtgttgtagtctgggag 40023460  T
Q  179 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtg 250  Q
    |||| ||||||||||| |||| || | | |||||||||||||||| || |  |||||| |||||||||||||    
T  40023459 tttt-attttgaggggcgttcttttgggatgagtagtgacgatggatggttgtggataccgtgtttacagtg 40023389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 79 - 288
Target Start/End: Original strand, 43012469 - 43012677
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactggga 177  Q
    |||||||||| ||  ||||||| ||||| ||||||| || |||||| ||| |  ||| ||| |||||| ||||||||||||| ||||||| || || |||    
T  43012469 tctttcggtgaatcagaggtcgcgaggttgtggaagttgcatgatcgttcggtcaggtgctcttcgaaatgtggctcagcttgggtgttggggtctagga 43012568  T
Q  178 gttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagtttta 277  Q
    |||||||||| ||||| ||||| |||| ||||||||||| ||||||  |  | |||||| |||||||||| |||| ||||||||||||||||| ||||||    
T  43012569 gttttaattt-gaggg-tgttctttggaggtgagtagtggcgatggacgggggtggataccgtgtttacaatgcttgtttttgtgaaggagtctgtttta 43012666  T
Q  278 ggcggtgatgt 288  Q
    |  ||||||||    
T  43012667 gatggtgatgt 43012677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 80 - 285
Target Start/End: Original strand, 7104936 - 7105140
Alignment:
Q  80 ctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttgg-tgttgaggactgggag 178  Q
    |||| ||||||| | |||| |||||||||||||||||| |||||  ||| | || ||||||||||||| |||||||| ||| | ||||  ||||||||||    
T  7104936 cttttggtggatcgaaggttgagaggtggtggaagctgtatgatgcttc-gttatgagcttttcgaatatggctcagtttttgatgttagggactgggag 7105034  T
Q  179 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttag 278  Q
    ||||| |||| |||||||||  || | ||||||||||||||||||||| || ||||||  || |||| |||||| |||||  ||||| |||| |||||||    
T  7105035 tttta-ttttaaggggtgtttctttggggtgagtagtgacgatgggtggtggtggatactgtttttatagtgcttgttttcttgaagaagtctgttttag 7105133  T
Q  279 gcggtga 285  Q
    | |||||    
T  7105134 gtggtga 7105140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 77 - 365
Target Start/End: Original strand, 25647776 - 25648061
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgagg-actgg 175  Q
    ||||||| ||||||| |||||||||||||||||| ||| ||||||||||||| | || |||||||||| | ||||||||| ||||||| | ||| | |||    
T  25647776 tttcttttggtggatcggaggtcgagaggtggtgaaagttgaatgatctttcggttatgagcttttcggacgtggctcagttttggtgctcaggaagtgg 25647875  T
Q  176 gagttttaattttgaggggtg---ttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcag 272  Q
    | |  ||| |||| |||||||   ||  |||| |||||||||||| ||||| ||  |||||||||||| ||| ||||| | | ||| |||| |||||  |    
T  25647876 ggg--ttattttttaggggtgtttttatttgggggtgagtagtgatgatggatg--gttggatatcgt-ttttcagtggt-ggtttcgtgatggagtatg 25647969  T
Q  273 ttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
    ||||| | |||||  | |  ||||||| |||| |||||||   |||| ||||||||||||||||||||||||||||| |||||||| ||||||    
T  25647970 ttttatgtggtgacatgttatttggtgggtgtggtcctcatgtgtgt-ttttagggtgtttattttcgggtgttccgtctatatactgcgcct 25648061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 78 - 250
Target Start/End: Complemental strand, 39021267 - 39021094
Alignment:
Q  78 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatcttt-cagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 176  Q
    |||||| ||||||| |||||||||||| |||||| |||||| |||||||| | | || ||| |||||| |||||||| |||||||||||||||||||| |    
T  39021267 ttcttttggtggatcggaggtcgagagatggtggtagctgattgatcttttcggatatgagtttttcggatgtggcttagctttggtgttgaggactgag 39021168  T
Q  177 agttttaattttgaggggtg-ttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtg 250  Q
    || ||| ||||||| | ||| ||| ||||  |||||||||||||||| | |  || ||||||||| |||||||||    
T  39021167 ag-tttcattttgacgcgtgtttctttgggtgtgagtagtgacgatgagaggcgtgggatatcgtttttacagtg 39021094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 206 - 361
Target Start/End: Complemental strand, 48893214 - 48893060
Alignment:
Q  206 ggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgtt 305  Q
    ||||||||||||||| || |||  |||||||| || ||||| ||  |||||||||| ||||||||  ||||||| |||||  | |||||||||| |||||    
T  48893214 ggtgagtagtgacgacggatgacattggatattgtttttaccgtaatcgtttttgtaaaggagtctcttttaggtggtgacatgtattttggtgggtgtt 48893115  T
Q  306 gtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggc 361  Q
    ||| |||| ||||| |||||  |||||||||||||| |||||| | ||||||||||    
T  48893114 gtcttcaggggtgt-ttttaaagtgtttattttcggatgttcctcttatatacggc 48893060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 258
Target Start/End: Original strand, 20611876 - 20612054
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactggg 176  Q
    ||||||||||||| |||||||| |||||  |||  |||||||||||| ||| | |||| ||| |||||| |||| |||||||| ||||||| || || ||    
T  20611876 tctttcggtggatcggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggtgctcttcgaaatgtgactcagcttgggtgttg-ggtctagg 20611974  T
Q  177 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttt 258  Q
    ||||||| || |||||| ||||| |||  ||||||||||||||||||| |||| ||||||  |||||||||||||| |||||    
T  20611975 agtttta-ttctgaggg-tgttctttgtgggtgagtagtgacgatgggcgatggtggatactgtgtttacagtgcttgtttt 20612054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 288
Target Start/End: Original strand, 53247993 - 53248200
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactggg 176  Q
    |||||||||||||||||||||| |||||  |||  || || |||||| ||| | || | ||| |||||| |||||||||| || ||||||| || ||| |    
T  53247993 tctttcggtggattggaggtcgcgaggtttgtgatagttgtatgatccttcggttatgtgctcttcgaaatgtggctcagtttgggtgttggggtctgag 53248092  T
Q  177 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagtttt 276  Q
    |||||| |||||||| | ||||| |||  ||||||||||||||||||| | || ||| || ||||||||||||||| |||||| |   |||||| |||||    
T  53248093 agtttttattttgagag-tgttctttgtgggtgagtagtgacgatgggcggtggtggttaccgtgtttacagtgcttgttttttt---ggagtctgtttt 53248188  T
Q  277 aggcggtgatgt 288  Q
    ||| ||||||||    
T  53248189 aggtggtgatgt 53248200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 79 - 259
Target Start/End: Original strand, 47235791 - 47235971
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactggg 176  Q
    |||||||||||||  ||||||| |||||  |||  ||||| |||||| ||| | |||| ||| |||||| ||||| ||||||| ||||||| || ||| |    
T  47235791 tctttcggtggatcagaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtggttcagcttgggtgttggggtctgcg 47235890  T
Q  177 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 259  Q
    ||||||| ||||||||| ||||| |||  ||||||||||||||||||  | || |||||| ||||||||||||||| ||||||    
T  47235891 agtttta-ttttgaggg-tgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgttttt 47235971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 166
Target Start/End: Complemental strand, 14755255 - 14755166
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgtt 166  Q
    ||||||||| ||||| |||||||||||| ||||||||| ||||||||||||| |  | |||||| | | |||||||||||||||||||||    
T  14755255 tttctttcgatggatcggaggtcgagagatggtggaagttgaatgatctttcggggatgagcttgttggatgtggctcagctttggtgtt 14755166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 79 - 288
Target Start/End: Original strand, 19176596 - 19176806
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatc--tttcagctaggagcttttcg-aatgtggctcagctttggtgttgaggactgg 175  Q
    ||||| ||||||| ||||||||  |||| |||||||||| ||||||  |||| |  ||| ||| |||| ||||||||||||||| ||||| | || ||||    
T  19176596 tcttttggtggatcggaggtcgcaaggttgtggaagctgcatgatccttttcggtcaggtgctcttcgtaatgtggctcagcttgggtgtcggggtctgg 19176695  T
Q  176 gagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttt 275  Q
    | |||||| ||||||||| ||||| || | |||||||||||||||||| || || ||||||  |||||||| ||||| |||||| |   |||||| ||||    
T  19176696 gtgtttta-ttttgaggg-tgttctttaggggtgagtagtgacgatggatggtggtggatactgtgtttactgtgcttgttttttttttggagtctgttt 19176793  T
Q  276 taggcggtgatgt 288  Q
    |||| ||| ||||    
T  19176794 taggtggttatgt 19176806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 357
Target Start/End: Original strand, 14194154 - 14194300
Alignment:
Q  206 ggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgtt 305  Q
    |||||||||||||||||| ||  ||||||||||||  || |||||  || ||| |||| |||||| |||||||| ||||| || |||||||||| ||||     
T  14194154 ggtgagtagtgacgatggatg--gttggatatcgttatt-cagtgg-cgatttcgtgatggagtctgttttaggtggtgacgtgtattttggtgggtgtg 14194249  T
Q  306 gtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatata 357  Q
    |||||||   |||| ||||||| ||||||||||||| |||||||||||||||    
T  14194250 gtcctcatgagtgt-ttttaggatgtttattttcggatgttccgcctatata 14194300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 79 - 259
Target Start/End: Complemental strand, 34475742 - 34475564
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactggg 176  Q
    |||||||||||||||||||||| |||||  |||  ||||| |||||| ||| | |||| ||| |||||| |||| |||||||| ||||||| ||  || |    
T  34475742 tctttcggtggattggaggtcgcgaggtttgtgatagctgtatgatccttcggttaggtgctcttcgaaatgtgactcagcttaggtgttggggtatgag 34475643  T
Q  177 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 259  Q
    ||||||    || | |||||||| |||  ||||||||||||||||||| | || |||||| |||||||||| |||| ||||||    
T  34475642 agtttt----tttaagggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacattgcttgttttt 34475564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 252
Target Start/End: Complemental strand, 2392494 - 2392321
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactggg 176  Q
    ||||||||||||| |||||||| |||||  |||  ||||| |||||| ||| | ||||| || ||| || ||||||||||||| ||||||| || || ||    
T  2392494 tctttcggtggatcggaggtcgcgaggtttgtgctagctgcatgatccttcggttaggatctcttcaaaatgtggctcagcttgggtgttggggtctagg 2392395  T
Q  177 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgct 252  Q
    ||||||| |||  |||  ||||  |||  ||||||||||||||||||| | || |||||| |||||||||||||||    
T  2392394 agttttattttgtagg--tgttatttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtgct 2392321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 312
Target Start/End: Complemental strand, 25594406 - 25594304
Alignment:
Q  208 tgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgt 307  Q
    ||||||||| ||||||||| | ||||||||||| ||| ||||| ||||||| ||||||||||  ||||||||  ||||||| |||| ||||| |||||||    
T  25594406 tgagtagtggcgatgggtggt-ttggatatcgttttttcagtggtcgtttt-gtgaaggagtatgttttaggtagtgatgtttattgtggtgggtgttgt 25594309  T
Q  308 cctca 312  Q
    |||||    
T  25594308 cctca 25594304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 270
Target Start/End: Complemental strand, 9583972 - 9583852
Alignment:
Q  147 tgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttac 246  Q
    |||||||| |||| ||| ||| || |||||||||||| ||||||||  ||||| |||  |||||||||||||||| || | || ||||||||||||||||    
T  9583972 tgtggctctgcttgggttttggggtctgggagtttta-ttttgagga-tgttctttgc-ggtgagtagtgacgataggcggtggtggatatcgtgtttac 9583876  T
Q  247 agtgctcgtttttgtgaaggagtc 270  Q
     ||||| |||||| ||||||||||    
T  9583875 ggtgcttgtttttttgaaggagtc 9583852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 357
Target Start/End: Complemental strand, 33143939 - 33143663
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 176  Q
    |||||||||||||||  ||||||| ||||||||||||||||| |||||| | |  |||||| ||||    ||||| ||||||||||||||  ||| ||||    
T  33143939 tttctttcggtggatcagaggtcgcgaggtggtggaagctgattgatctcttatataggagttttttcgttgtggatcagctttggtgttttggaatggg 33143840  T
Q  177 agttttaattttgaggggt--gttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagtt 274  Q
    | ||    || ||||||||   ||  ||   ||||||||||||||| || ||  |||||||||||| | | ||||| | ||||| ||||||||||  |||    
T  33143839 attt----ttctgaggggttgttttcttaagggtgagtagtgacgacggatggggttggatatcgtttgttcagtggtggttttcgtgaaggagtttgtt 33143744  T
Q  275 ttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatata 357  Q
    ||||| ||||| || | || |||||  |||| |||||   || || |||| |||||||| |||||||||||||||||||||||    
T  33143743 ttaggtggtgacgtgttttatggtggatgttatcctcttgggagt-tttttgggtgttt-ttttcgggtgttccgcctatata 33143663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 365
Target Start/End: Complemental strand, 14280343 - 14280252
Alignment:
Q  272 gttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
    |||||||| ||||| || |||||| ||| ||||||||||||| | | | ||| || ||||||| ||||||||||||||||||||||||||||||    
T  14280343 gttttaggtggtgacgtgtattttagtgggtgttgtcctcag-gatat-tttcagagtgtttactttcgggtgttccgcctatatacggcgcct 14280252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 362
Target Start/End: Original strand, 14893264 - 14893305
Alignment:
Q  321 ttttagggtgtttattttcgggtgttccgcctatatacggcg 362  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  14893264 ttttagggtgtttattttcaggtgttccgcctatatacggcg 14893305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 357
Target Start/End: Original strand, 41039463 - 41039527
Alignment:
Q  292 ttttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatata 357  Q
    |||||||| |||||||| |||  ||||| ||||||||||||||||||| |||||||||||||||||    
T  41039463 ttttggtgggtgttgtcttcacgggtgt-ttttagggtgtttattttctggtgttccgcctatata 41039527  T

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Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 145 - 252
Target Start/End: Complemental strand, 2394190 - 2394085
Alignment:
Q  145 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 244  Q
    ||||||||||||||| ||||||| || || ||||||||| |||  |||  ||||  |||  ||||||||||||||||||| | || |||||| |||||||    
T  2394190 aatgtggctcagcttgggtgttggggtctaggagttttattttgtagg--tgttatttgtgggtgagtagtgacgatgggcggtggtggataccgtgttt 2394093  T
Q  245 acagtgct 252  Q
    ||||||||    
T  2394092 acagtgct 2394085  T

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Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 228 - 360
Target Start/End: Original strand, 12086483 - 12086615
Alignment:
Q  228 tgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagg 327  Q
    ||||| ||||||| ||||||||| |||||||  ||||    || |||||||| |||||||| |||||||||| |||| ||| |  | ||| ||||||| |    
T  12086483 tgttgaatatcgtttttacagtgatcgttttcttgaatacatctgttttaggtggtgatgtttattttggtgggtgtggtcttagggggtatcttttaag 12086582  T
Q  328 gtgtttattttcgggtgttccgcctatatacgg 360  Q
     ||||||||||||  |||||||||| |||||||    
T  12086583 atgtttattttcgaatgttccgcctttatacgg 12086615  T

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Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 21342629 - 21342733
Alignment:
Q  79 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 178  Q
    ||||||| |||||  ||||||||||||| ||||||||||  || || ||| | ||| |||||||||||||||||||  ||| |||||||| | ||| |||    
T  21342629 tctttcgatggatcagaggtcgagaggttgtggaagctgcttgttcattcggttagaagcttttcgaatgtggctcgacttgggtgttgaagtctgagag 21342728  T
Q  179 tttta 183  Q
    |||||    
T  21342729 tttta 21342733  T

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Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 145 - 259
Target Start/End: Complemental strand, 30352359 - 30352249
Alignment:
Q  145 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 244  Q
    ||||||||||||||| ||||||| || || ||||||||   ||| |||| ||||| |||  | ||||||||||||||||||| || |||||| |||||||    
T  30352359 aatgtggctcagcttgggtgttggggtctcggagtttt---ttttaggg-tgttctttgtggatgagtagtgacgatgggtggtggtggataccgtgttt 30352264  T
Q  245 acagtgctcgttttt 259  Q
    ||||| || ||||||    
T  30352263 acagtacttgttttt 30352249  T

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Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 163
Target Start/End: Original strand, 14194040 - 14194109
Alignment:
Q  93 ggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggt 163  Q
    ||||||||||||||| ||||||||||||  |||||| | ||||||||||||| | ||||||||| ||||||    
T  14194040 ggaggtcgagaggtg-tggaagctgaattgtctttcggttaggagcttttcggacgtggctcagttttggt 14194109  T

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Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 46358376 - 46358328
Alignment:
Q  78 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctt 126  Q
    ||||||| ||||||||||||| ||||||||||||||||| | |||||||    
T  46358376 ttctttcagtggattggaggttgagaggtggtggaagcttattgatctt 46358328  T

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Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 310
Target Start/End: Complemental strand, 1652691 - 1652648
Alignment:
Q  267 agtcagttttaggcggtgatgtatattttggtgagtgttgtcct 310  Q
    ||||||||||||| |||||||| |||||||||| ||||||||||    
T  1652691 agtcagttttagggggtgatgtttattttggtgggtgttgtcct 1652648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 224
Target Start/End: Original strand, 17551113 - 17551190
Alignment:
Q  145 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatggg 224  Q
    |||||||||||| || ||||||| || ||| |||||||| ||||||||| ||||| |||  |||||||||||||||||||    
T  17551113 aatgtggctcagtttgggtgttggggtctgagagtttta-ttttgaggg-tgttctttgtcggtgagtagtgacgatggg 17551190  T

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Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 222
Target Start/End: Original strand, 31482977 - 31483119
Alignment:
Q  79 tctttcggtggattggaggtcgagagg-tggtggaagctgaatgatctttcagctaggagcttttcg-aatgtggctcagctttggtgttgaggactggg 176  Q
    |||||||||||||||||||||| |||| | |||  ||||| |||||| ||| | |||| ||| |||| ||||||||||||||| ||||||| ||  || |    
T  31482977 tctttcggtggattggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtggctcagcttaggtgttggggtttgag 31483076  T
Q  177 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatg 222  Q
    |||||   |||| | |||||||| |||  ||| |||||||||||||    
T  31483077 agttt---tttttaagggtgttctttgtgggttagtagtgacgatg 31483119  T

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Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 358
Target Start/End: Complemental strand, 46358135 - 46358092
Alignment:
Q  315 ggtgtcttttagggtgtttattttcgggtgttccgcctatatac 358  Q
    ||||||||||| ||||||||||||| |||||| |||||||||||    
T  46358135 ggtgtcttttaaggtgtttattttcaggtgtttcgcctatatac 46358092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 1652628 - 1652579
Alignment:
Q  315 ggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
    |||||||||  |||||||||||| ||||||||||||||||||||| |||||    
T  1652628 ggtgtctttgtgggtgtttattt-cgggtgttccgcctatatacgacgcct 1652579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 25594255 - 25594217
Alignment:
Q  321 ttttagggtgtttattttcgggtgttccgcctatatacg 359  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  25594255 ttttatggtgtttactttcgggtgttccgcctatatacg 25594217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 359
Target Start/End: Original strand, 32010117 - 32010159
Alignment:
Q  317 tgtcttttagggtgtttattttcgggtgttccgcctatatacg 359  Q
    ||||||||| ||||||||||||| ||| |||||||||||||||    
T  32010117 tgtcttttaaggtgtttattttcaggtattccgcctatatacg 32010159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 258
Target Start/End: Complemental strand, 37999125 - 37998971
Alignment:
Q  102 gaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtg-ttcg 200  Q
    ||||||||||||||| | ||||||||  | ||||||||||| | | |||| ||| |||||||||| ||||| ||||  ||||||||| | ||||| ||      
T  37999125 gaggtggtggaagctaattgatcttttggataggagctttttggaggtggatcaactttggtgtttaggac-gggaagtttaattttaatgggtgttttt 37999027  T
Q  201 ttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttt 258  Q
    ||  | |||||| ||||||||| |||  |||||||||||| || |||||| |||||||    
T  37999026 ttttttgtgagtggtgacgatgagtg--gttggatatcgttttaacagtggtcgtttt 37998971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 297
Target Start/End: Original strand, 32010027 - 32010072
Alignment:
Q  252 tcgtttttgtgaaggagtcagttttaggcggtgatgtatattttgg 297  Q
    ||||||| ||||||||||| |||||||| |||||||| ||||||||    
T  32010027 tcgttttcgtgaaggagtctgttttaggtggtgatgtttattttgg 32010072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 257
Target Start/End: Original strand, 45163983 - 45164126
Alignment:
Q  113 agctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgag 211  Q
    ||||| |||||| ||| | |||| ||| |||||| ||||||| ||||| ||||||| || || ||||||||| ||||||||| ||||  |||  |||||     
T  45163983 agctgcatgatccttcggttaggtgctcttcgaaatgtggcttagcttgggtgttggggtctaggagtttta-ttttgaggg-tgttatttgtaggtgat 45164080  T
Q  212 tagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttt 257  Q
    ||||||||||||| | || || ||| |||||||||| |||| ||||    
T  45164081 tagtgacgatgggcggtgatgaataccgtgtttacaatgcttgttt 45164126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 27399218 - 27399270
Alignment:
Q  260 gtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctca 312  Q
    ||||||||| | |||||||| | |||||| |||||||||| ||||||||||||    
T  27399218 gtgaaggagcctgttttaggtgatgatgtttattttggtgggtgttgtcctca 27399270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 77 - 295
Target Start/End: Original strand, 19473 - 19687
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatc-tttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgg 175  Q
    ||||||||||||||| |||||||||||| ||||||||||||||| ||| |||| |  |||||||||||||||||||||| |||||||||||||||| |      
T  19473 tttctttcggtggatcggaggtcgagagttggtggaagctgaataatcttttcggacaggagcttttcgaatgtggctctgctttggtgttgaggatt-- 19570  T
Q  176 gagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttt 275  Q
    ||  |||| |||||| |||| ||  |||| || |||||||||||||| |||  |||||||||||| |||| || | ||||||||| ||||||||  ||||    
T  19571 gaagtttatttttgaagggtatttcttgg-ggcgagtagtgacgatgtgtg--gttggatatcgtttttatagaggtcgtttttgagaaggagtttgttt 19667  T
Q  276 taggcggtgatgtatatttt 295  Q
    |||| |||||||| ||||||    
T  19668 taggtggtgatgtgtatttt 19687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 77 - 365
Target Start/End: Complemental strand, 20701794 - 20701500
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 176  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||| ||||| |||| | |||| ||    
T  20701794 tttctttcggtggatcggaggtcgagaggtagtggaagctgaatgatctttcggataggagcttttcgaatgtggctcaactttgttgttcaagactagg 20701695  T
Q  177 agttttaattttgaggggtg----ttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcag 272  Q
    || |||  |||| | |||||    ||  |||| ||||||||||||||||||||  | ||||||||||| ||||||||| | | ||| ||||| | ||| |    
T  20701694 ag-tttgtttttaaagggtgttttttttttgggggtgagtagtgacgatgggtagtattggatatcgtttttacagtggttgctttcgtgaatgggtctg 20701596  T
Q  273 ttttaggcggtgatgtatat-----tttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
    || |||| ||||| || | |     |||| || |||||||||||   ||||  |||||| |||||||||| | |||||||||||||||||| ||||||    
T  20701595 ttataggtggtgaagtgttttagggtttgatgggtgttgtcctcgtgggtg--ttttagtgtgtttatttccaggtgttccgcctatatacagcgcct 20701500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 77 - 259
Target Start/End: Complemental strand, 3880589 - 3880404
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 176  Q
    |||||||| |||||| |||||||||| ||||||||||| ||||| ||||||| | || |||||||| | ||||||||||||||||||||| | |||| ||    
T  3880589 tttctttccgtggatcggaggtcgagtggtggtggaagttgaataatctttcggatatgagctttttggatgtggctcagctttggtgttcaagacttgg 3880490  T
Q  177 agttttaattttgaggggtg----ttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 259  Q
    || |||||||||||||||||    ||| | || |||||||||||||||  | || ||||||||||||| |||| |||| ||||||||    
T  3880489 ag-tttaattttgaggggtgttttttcttagggggtgagtagtgacgacagatggtgttggatatcgtttttatagtggtcgttttt 3880404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 77 - 359
Target Start/End: Complemental strand, 15120588 - 15120311
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttc-agctaggagcttttcgaatgtggctcagctttggtgttgaggactgg 175  Q
    ||||||| ||||||| |||||||||||||||||||||||||  ||||||||  || ||  || |||||| | ||||||   ||||||||||||||||||     
T  15120588 tttcttttggtggatcggaggtcgagaggtggtggaagctggttgatctttttagatattagattttcggacgtggctttactttggtgttgaggactgc 15120489  T
Q  176 gagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttt 275  Q
    | |||| |||||| |||| ||||  |||  |||||||||||||||||| || |||||||||| ||    | |||  |  |||||||||| ||||| ||||    
T  15120488 gggttt-aatttttagggatgtttcttgagggtgagtagtgacgatggatggtgttggatattgt----aaagtcgtt-tttttgtgaatgagtctgttt 15120395  T
Q  276 taggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacg 359  Q
    |||| |||||||| ||||||||||  |||||||||||  | ||| |||||||||||||||| || | ||||| ||||| |||||    
T  15120394 taggtggtgatgtgtattttggtggatgttgtcctcatggatgttttttagggtgtttattgtcagatgttctgcctacatacg 15120311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 138 - 247
Target Start/End: Original strand, 13423603 - 13423716
Alignment:
Q  138 cttttcgaatgtggctcagctttggtgttgaggactgggagttttaattt---tgaggggtg-ttcgttggtggtgagtagtgacgatgggtgatgttgg 233  Q
    ||||||| ||||||||||||||||||||||||||||  |||||| | |||   ||||||||| ||| |||| |||||||||||| |||||||| ||| ||    
T  13423603 cttttcggatgtggctcagctttggtgttgaggacttagagtttaattttgactgaggggtgtttcattgggggtgagtagtgaagatgggtgttgtggg 13423702  T
Q  234 atatcgtgtttaca 247  Q
    || |||| ||||||    
T  13423703 atgtcgtttttaca 13423716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 17278215 - 17278165
Alignment:
Q  315 ggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 365  Q
    ||||||||||| | ||||||||||||||||||||||||||||||| |||||    
T  17278215 ggtgtcttttatgatgtttattttcgggtgttccgcctatatacgacgcct 17278165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 311
Target Start/End: Complemental strand, 32935305 - 32935099
Alignment:
Q  102 gaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgt 201  Q
    |||||||||||||||| ||||||||||    | ||| |||||| ||||  ||||||||||||| |||| |||| ||| ||| |||| ||||| ||||  |    
T  32935305 gaggtggtggaagctgcatgatctttcgaacatgagtttttcggatgtaactcagctttggtgatgagcactgtgag-tttcatttagagggatgttttt 32935207  T
Q  202 tggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgag 301  Q
    ||| ||| |||||||| |||||||| |  || ||||||| |||  || |  |||||| || ||||||||  ||||||| |||| ||| |||||||||| |    
T  32935206 tgg-ggtcagtagtgatgatgggtggttatgtatatcgt-ttttgagggggcgttttcgttaaggagtctattttaggtggtggtgtttattttggtggg 32935109  T
Q  302 tgttgtcctc 311  Q
    ||||||||||    
T  32935108 tgttgtcctc 32935099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 259
Target Start/End: Original strand, 10541993 - 10542105
Alignment:
Q  145 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 244  Q
    ||||||||||||||| ||||||| || |||| |||||||  ||||  |||| ||| |||  ||||||||||||||||||| | || |||||| ||| |||    
T  10541993 aatgtggctcagcttgggtgttggggtctggaagtttta--tttggagggtattctttgtgggtgagtagtgacgatgggcggtggtggataccgtattt 10542090  T
Q  245 acagtgctcgttttt 259  Q
    | |||||| ||||||    
T  10542091 aaagtgcttgttttt 10542105  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 252
Target Start/End: Original strand, 14663238 - 14663343
Alignment:
Q  145 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 244  Q
    |||||||||| |||| | ||||| ||  ||||||||||| ||||||||  ||||| |||  ||||||||||||||||||| | || ||||||| ||||||    
T  14663238 aatgtggctcggcttggatgttggggtttgggagtttta-ttttgagga-tgttctttgcgggtgagtagtgacgatgggcggtggtggatattgtgttt 14663335  T
Q  245 acagtgct 252  Q
    ||||||||    
T  14663336 acagtgct 14663343  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 362
Target Start/End: Original strand, 6860348 - 6860408
Alignment:
Q  303 gttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccg--cctatatacggcg 362  Q
    ||||||| || |||||| |||||||||||||||||| ||||||||||  |||||||||||||    
T  6860348 gttgtccgcataggtgt-ttttagggtgtttatttttgggtgttccgcccctatatacggcg 6860408  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 116
Target Start/End: Original strand, 20500011 - 20500049
Alignment:
Q  78 ttctttcggtggattggaggtcgagaggtggtggaagct 116  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  20500011 ttctttcgatggattggaggttgagaggtggtggaagct 20500049  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 358
Target Start/End: Original strand, 20500282 - 20500323
Alignment:
Q  316 gtgtcttttagggtgtttattttcgggtgttccgcctatatac 358  Q
    |||||||||| |||||||||||| |||||||||||||||||||    
T  20500282 gtgtcttttatggtgtttatttt-gggtgttccgcctatatac 20500323  T

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Target: scaffold0119 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 77 - 295
Target Start/End: Complemental strand, 42129 - 41915
Alignment:
Q  77 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatcttt-cagctaggagcttttcgaatgtggctcagctttggtgttgaggactgg 175  Q
    |||||||| |||||| |||||||||||| ||||||||||||||| |||||| | | ||||||||||||||||||||||| |||||||||||||||| |      
T  42129 tttctttcagtggatcggaggtcgagagttggtggaagctgaataatcttttcggataggagcttttcgaatgtggctctgctttggtgttgaggatt-- 42032  T
Q  176 gagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttt 275  Q
    ||  |||| |||| | |||| ||  |||| || ||||||||||||||||||  |||||||||||| |||| || | ||||||  | |||||| |  ||||    
T  42031 gaagtttatttttaaagggtatttcttgg-ggcgagtagtgacgatgggtg--gttggatatcgtttttatagaggtcgtttccgagaaggaatttgttt 41935  T
Q  276 taggcggtgatgtatatttt 295  Q
    |||| |||||||| ||||||    
T  41934 taggtggtgatgtgtatttt 41915  T

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Target: scaffold1384 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 201 - 365
Target Start/End: Complemental strand, 1522 - 1354
Alignment:
Q  201 ttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtga 300  Q
    |||| ||| ||||||||||| | ||| ||||||||||||| ||||||||| | ||| | ||| |||||||||||||||| ||||| || |||||| |||     
T  1522 ttgggggtcagtagtgacgacgtgtggtgttggatatcgtttttacagtggttgttctcgtgtaggagtcagttttaggtggtgacgtgtatttttgtgg 1423  T
Q  301 g---tgttgtcctcagaggtgtcttttagggtgttta-ttttcgggtgttccgcctatatacggcgcct 365  Q
    |   ||||||||| || ||||| ||||| |||||||| ||||||||||||| |||||||||||||||||    
T  1422 gttttgttgtccttaggggtgttttttatggtgtttatttttcgggtgttctgcctatatacggcgcct 1354  T

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Target: scaffold0343 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 145 - 265
Target Start/End: Original strand, 5867 - 5985
Alignment:
Q  145 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 244  Q
    ||||||||||||||| ||||||| |  |||||||||||| ||||||||| ||||  |||  |||||||||||| |||||| | || |||||| | |||||    
T  5867 aatgtggctcagcttgggtgttgggatctgggagtttta-ttttgaggg-tgttttttgtgggtgagtagtgatgatgggaggtggtggataccatgttt 5964  T
Q  245 acagtgctcgtttttgtgaag 265  Q
    || ||||| |||||| |||||    
T  5965 acggtgcttgtttttttgaag 5985  T

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Target: scaffold1613 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 359
Target Start/End: Complemental strand, 746 - 704
Alignment:
Q  317 tgtcttttagggtgtttattttcgggtgttccgcctatatacg 359  Q
    ||||||||| |||||||||||||||||||||| | ||||||||    
T  746 tgtcttttatggtgtttattttcgggtgttccacatatatacg 704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 312
Target Start/End: Complemental strand, 916 - 790
Alignment:
Q  184 attttgaggggtgtt-cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcgg 282  Q
    |||| |||||||||| |||||| | ||||||||||||||| ||| |  |||||||||| ||| ||||| || ||   ||||| ||||| |||||||| ||    
T  916 atttagaggggtgttacgttgg-gatgagtagtgacgatgagtggttatggatatcgt-tttccagtgatcattcc-gtgaaagagtctgttttaggtgg 820  T
Q  283 tgatgtatattttggtgagtgttgtcctca 312  Q
    |||||| ||||||||||  |||||||||||    
T  819 tgatgtttattttggtgtatgttgtcctca 790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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