View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6391_low_3 (Length: 348)
Name: NF6391_low_3
Description: NF6391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6391_low_3 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 29819671 - 29820000
Alignment:
| Q |
19 |
ccagtttatcttggattttacgtagaggcacacttcttannnnnnnaatggcactatgccaaagatcaacatttcttccataaagataggaaccaaacac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29819671 |
ccagtttatcttggattttacgtagaggcacacttcttatttttttaatggcactatgccaaagatcaacatttcttccataaagataggaaccaaacac |
29819770 |
T |
|
| Q |
119 |
ctcaagtgccaatggaagaccaccagtatagtccaccacttctttggacaaatccaaatagccttcttgtggtttatctcctttaaaggctttcaaacaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29819771 |
ctcaagtgccaatggaagaccaccagtatagtccaccacttctttggacaaatccaaatagccttcttgtggtttatctcctttaaaggctttcaaacaa |
29819870 |
T |
|
| Q |
219 |
aagagattaagagcttcattttggaataacatccaaacctcataagttttatgtactccatgtgtcattaacaagtgtttatctctcgttgtgattatta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29819871 |
aagagattaagagcttcattttggaataacatccaaacctcataagttttatgtactccatgtgtcattaacaagtgtttatctctcgttgtgattatta |
29819970 |
T |
|
| Q |
319 |
ctctacttcccggaccaaaccagtcttgct |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
29819971 |
ctctacttcccggaccaaaccagtcttgct |
29820000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 348
Target Start/End: Original strand, 29827915 - 29828243
Alignment:
| Q |
20 |
cagtttatcttggattttacgtagaggcacacttcttannnnnnnaatggcactatgccaaagatcaacatttcttccataaagataggaaccaaacacc |
119 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
29827915 |
cagtttatcttggatttcacgtagaggagcacttcttatatttttaatagcactatgccaaagatcaacacttcttccataaagataggaacctaacacc |
29828014 |
T |
|
| Q |
120 |
tcaagtgccaatggaagaccaccagtatagtccaccacttctttggacaaatccaaatagccttcttgtggtttatctcctttaaaggctttcaaacaaa |
219 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29828015 |
tcaagtgccaatggaagaccaccagcatattccaccacttctttagacaaatccaaatagccttcttgtggtttatctcctttaaaggctttcaaacaaa |
29828114 |
T |
|
| Q |
220 |
agagattaagagcttcattttggaataacatccaaacctcataagttttatgtactccatgtgtcattaacaagtgtttatctctcgttgtgattattac |
319 |
Q |
| |
|
||| |||||| ||||| |||||||||| ||||| ||||||||||| || ||||||||||||||| || ||| ||||||||||||| |||||||||||||| |
|
|
| T |
29828115 |
agacattaagggcttcgttttggaatagcatcccaacctcataaggttgatgtactccatgtgttatcaaccagtgtttatctcttgttgtgattattac |
29828214 |
T |
|
| Q |
320 |
tctacttcccggaccaaaccagtcttgct |
348 |
Q |
| |
|
||||||||| ||||||||||| ||||||| |
|
|
| T |
29828215 |
tctacttcctggaccaaaccaatcttgct |
29828243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 69 - 346
Target Start/End: Complemental strand, 29572311 - 29572034
Alignment:
| Q |
69 |
gcactatgccaaagatcaacatttcttccataaagataggaaccaaacacctcaagtgccaatggaagaccaccagtatagtccaccacttctttggaca |
168 |
Q |
| |
|
||||||||||||| ||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
29572311 |
gcactatgccaaacatcaatatttcttccatacagataggaacctaacacctcaagtgccaatggaagaccaccacaatagtccaccacttctttggata |
29572212 |
T |
|
| Q |
169 |
aatccaaatagccttcttgtggtttatctcctttaaaggctttcaaacaaaagagattaagagcttcattttggaataacatccaaacctcataagtttt |
268 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| || |||| || | ||||||| | | | ||| ||||| |
|
|
| T |
29572211 |
agtccaaatacccttcttgtggtttatctcctttaaaggctttcaaacaaaagagaacaagggcatcatgtttgcataacattccagttttataggtttt |
29572112 |
T |
|
| Q |
269 |
atgtactccatgtgtcattaacaagtgtttatctctcgttgtgattattactctacttcccggaccaaaccagtcttg |
346 |
Q |
| |
|
|||||||||||||||||||| |||||| || ||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29572111 |
atgtactccatgtgtcattagcaagtgcttgtctcttgttgtgattattactctacttcccggaccaaaccaatcttg |
29572034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 69 - 348
Target Start/End: Original strand, 11123939 - 11124218
Alignment:
| Q |
69 |
gcactatgccaaagatcaacatttcttccataaagataggaaccaaacacctcaagtgccaatggaagaccaccagtatagtccaccacttctttggaca |
168 |
Q |
| |
|
||||||||||||| |||||| ||||||||| ||||| ||||| || ||||||||||| ||||||||||| | ||||| || |||||||||||| ||| |
|
|
| T |
11123939 |
gcactatgccaaacctcaacagttcttccatgaagatgtgaacctaatacctcaagtgctaatggaagacctcttgtatattcaaccacttctttgcaca |
11124038 |
T |
|
| Q |
169 |
aatccaaatagccttcttgtggtttatctcctttaaaggctttcaaacaaaagagattaagagcttcattttggaataacatccaaacctcataagtttt |
268 |
Q |
| |
|
| |||||| |||||| |||| | | ||||||||||||||||||| ||||| ||||| |||||||||| | ||| | ||| |||||||| |
|
|
| T |
11124039 |
agctcaaatactcttctttaggttgaatttctttaaaggctttcaaacagaagagcttaagtgcttcattttttactaagcctttagccttataagtttc |
11124138 |
T |
|
| Q |
269 |
atgtactccatgtgtcattaacaagtgtttatctctcgttgtgattattactctacttcccggaccaaaccagtcttgct |
348 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||| |||||||||| ||||||||||| ||||||||||| ||||||| |
|
|
| T |
11124139 |
atgcactccatgtgtcattaacaagtgcttatctctacttgtgattataactctacttcctggaccaaaccattcttgct |
11124218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 340
Target Start/End: Original strand, 6589823 - 6589865
Alignment:
| Q |
298 |
tatctctcgttgtgattattactctacttcccggaccaaacca |
340 |
Q |
| |
|
||||||| ||||||||||||| |||||| |||||||||||||| |
|
|
| T |
6589823 |
tatctcttgttgtgattattattctactccccggaccaaacca |
6589865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 340
Target Start/End: Complemental strand, 6713992 - 6713950
Alignment:
| Q |
298 |
tatctctcgttgtgattattactctacttcccggaccaaacca |
340 |
Q |
| |
|
||||||| |||||||| ||||||||||| |||||||||||||| |
|
|
| T |
6713992 |
tatctcttgttgtgatgattactctactccccggaccaaacca |
6713950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 340
Target Start/End: Complemental strand, 8412999 - 8412959
Alignment:
| Q |
300 |
tctctcgttgtgattattactctacttcccggaccaaacca |
340 |
Q |
| |
|
||||| |||||||| |||| ||||||||||||||||||||| |
|
|
| T |
8412999 |
tctcttgttgtgatgattattctacttcccggaccaaacca |
8412959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University