View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6391_low_4 (Length: 311)
Name: NF6391_low_4
Description: NF6391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6391_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 29247643 - 29247360
Alignment:
| Q |
1 |
cacaagaaaaacatacattagaaaaatgcacccagcaaagagttgcatatagaaataagttttaggatgcttcttataccaagtcaatattttaaggaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29247643 |
cacaagaaaaacatacattagaaaaatgcacccagcaaagagttgcatatagaaataagttttaggatgcttcttataccaagtcaatattttaaggaac |
29247544 |
T |
|
| Q |
101 |
ttctaaagtacactaacaatagcctatttaactgataaaacagttattggtcagaatgccatgcaaataaaagtacaaaaatcatgtcaatttctaatta |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29247543 |
ttctaaagtacactaacaatagcctattcaactgataaaacagttattggtcagaatgccatgcaaataaaagtacaaaaatcatgtcaatttctaatta |
29247444 |
T |
|
| Q |
201 |
aagttgtagtacttgacactaaaagtggaccacaaaaacatatgcaagtgcaacagcaaattaaaataactaatagccccaatg |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29247443 |
aagttgtagtacttgacactaaaagtggaccacaaaaacatatgcaagtgcaacagcaaattaaaataactaatagccccaatg |
29247360 |
T |
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