View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6392_high_101 (Length: 210)

Name: NF6392_high_101
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6392_high_101
NF6392_high_101
[»] chr7 (33 HSPs)
chr7 (1-158)||(14109027-14109182)
chr7 (1-158)||(14418984-14419139)
chr7 (15-167)||(4857195-4857347)
chr7 (14-167)||(46458682-46458835)
chr7 (2-166)||(38406013-38406177)
chr7 (38-166)||(14107827-14107955)
chr7 (38-166)||(14417784-14417912)
chr7 (67-164)||(38408296-38408393)
chr7 (1-166)||(40930413-40930578)
chr7 (22-90)||(35315199-35315267)
chr7 (18-164)||(43930316-43930462)
chr7 (16-121)||(13286965-13287070)
chr7 (1-79)||(4167533-4167611)
chr7 (5-119)||(24495011-24495125)
chr7 (38-172)||(40926512-40926646)
chr7 (16-116)||(49162282-49162382)
chr7 (87-166)||(4974091-4974170)
chr7 (44-166)||(46674933-46675055)
chr7 (58-167)||(25153652-25153761)
chr7 (14-163)||(25154905-25155054)
chr7 (102-163)||(48671076-48671137)
chr7 (49-165)||(4858348-4858464)
chr7 (43-167)||(19278347-19278471)
chr7 (14-78)||(26406208-26406272)
chr7 (102-166)||(46457065-46457129)
chr7 (44-167)||(22744740-22744863)
chr7 (43-166)||(43007647-43007770)
chr7 (38-144)||(14206690-14206796)
chr7 (38-144)||(14215380-14215486)
chr7 (38-166)||(13446651-13446779)
chr7 (121-166)||(43931942-43931987)
chr7 (14-119)||(44113471-44113576)
chr7 (102-166)||(45719610-45719674)
[»] chr1 (22 HSPs)
chr1 (4-167)||(49141455-49141618)
chr1 (1-167)||(44977215-44977381)
chr1 (1-167)||(52742932-52743098)
chr1 (1-71)||(9633865-9633935)
chr1 (1-121)||(14764269-14764389)
chr1 (4-111)||(51218925-51219032)
chr1 (1-166)||(50678361-50678523)
chr1 (1-136)||(26056103-26056238)
chr1 (1-90)||(27689354-27689443)
chr1 (14-78)||(51726813-51726877)
chr1 (18-113)||(36509859-36509954)
chr1 (14-61)||(37624539-37624586)
chr1 (81-163)||(29264870-29264951)
chr1 (44-166)||(47560134-47560256)
chr1 (14-167)||(21276988-21277141)
chr1 (1-113)||(23082082-23082194)
chr1 (43-166)||(3979311-3979434)
chr1 (44-166)||(3978039-3978161)
chr1 (38-164)||(52741485-52741611)
chr1 (1-90)||(30551545-30551634)
chr1 (44-136)||(13641282-13641374)
chr1 (35-111)||(35683105-35683181)
[»] chr6 (10 HSPs)
chr6 (4-165)||(18139446-18139607)
chr6 (14-166)||(31738358-31738510)
chr6 (19-165)||(33801991-33802137)
chr6 (14-167)||(293609-293763)
chr6 (16-165)||(27440146-27440295)
chr6 (1-83)||(13507127-13507209)
chr6 (44-166)||(33807684-33807806)
chr6 (14-121)||(14328743-14328850)
chr6 (14-121)||(14421753-14421860)
chr6 (44-136)||(22299902-22299994)
[»] scaffold0015 (1 HSPs)
scaffold0015 (1-168)||(207754-207921)
[»] chr8 (36 HSPs)
chr8 (1-168)||(21961816-21961983)
chr8 (1-165)||(37276199-37276363)
chr8 (1-167)||(10052098-10052264)
chr8 (5-143)||(7486095-7486233)
chr8 (14-128)||(13367019-13367133)
chr8 (1-111)||(44103252-44103362)
chr8 (1-136)||(117073-117208)
chr8 (1-111)||(39325790-39325900)
chr8 (1-73)||(39546633-39546705)
chr8 (67-164)||(7487409-7487506)
chr8 (14-163)||(19913490-19913639)
chr8 (1-166)||(36756059-36756224)
chr8 (5-111)||(13513470-13513576)
chr8 (5-111)||(13603003-13603109)
chr8 (18-136)||(24069419-24069537)
chr8 (14-176)||(36070163-36070325)
chr8 (14-111)||(21670114-21670211)
chr8 (35-166)||(29738286-29738417)
chr8 (5-79)||(41522648-41522722)
chr8 (96-166)||(41866889-41866959)
chr8 (1-90)||(13363534-13363623)
chr8 (14-166)||(35943902-35944055)
chr8 (44-165)||(36940032-36940153)
chr8 (14-166)||(16363781-16363933)
chr8 (75-166)||(10053774-10053865)
chr8 (1-144)||(12281736-12281878)
chr8 (48-167)||(38591010-38591129)
chr8 (44-166)||(31623901-31624023)
chr8 (1-78)||(36938764-36938841)
chr8 (43-167)||(41867914-41868038)
chr8 (1-56)||(21267237-21267292)
chr8 (14-136)||(44606164-44606286)
chr8 (98-167)||(37323342-37323411)
chr8 (16-85)||(39220755-39220824)
chr8 (70-167)||(39544924-39545021)
chr8 (14-78)||(2421262-2421326)
[»] chr4 (31 HSPs)
chr4 (1-166)||(39592245-39592410)
chr4 (1-136)||(35787821-35787956)
chr4 (1-166)||(86798-86963)
chr4 (15-166)||(6616181-6616332)
chr4 (4-167)||(47668556-47668719)
chr4 (19-143)||(11094544-11094668)
chr4 (38-166)||(39590936-39591064)
chr4 (38-166)||(21104303-21104431)
chr4 (44-167)||(29686250-29686373)
chr4 (43-166)||(33377362-33377485)
chr4 (14-111)||(36604810-36604907)
chr4 (1-166)||(29687934-29688095)
chr4 (14-121)||(17319082-17319189)
chr4 (14-144)||(29663660-29663789)
chr4 (1-79)||(38418973-38419051)
chr4 (14-167)||(11114949-11115102)
chr4 (43-164)||(55953850-55953971)
chr4 (45-167)||(28103486-28103608)
chr4 (80-166)||(35789625-35789711)
chr4 (37-166)||(11113737-11113866)
chr4 (98-166)||(37558993-37559061)
chr4 (18-70)||(41401677-41401729)
chr4 (38-110)||(52981143-52981215)
chr4 (18-113)||(34438454-34438549)
chr4 (48-166)||(15787505-15787623)
chr4 (34-144)||(30683016-30683126)
chr4 (43-113)||(34439658-34439728)
chr4 (45-167)||(52658905-52659027)
chr4 (75-128)||(96711-96764)
chr4 (18-166)||(15786947-15787095)
chr4 (1-61)||(44302820-44302880)
[»] chr3 (23 HSPs)
chr3 (1-167)||(17350058-17350224)
chr3 (1-163)||(39133015-39133177)
chr3 (15-166)||(25583109-25583260)
chr3 (14-111)||(7483494-7483591)
chr3 (12-166)||(8371215-8371369)
chr3 (1-79)||(11219512-11219590)
chr3 (1-163)||(19622003-19622165)
chr3 (16-165)||(53808314-53808463)
chr3 (35-167)||(26798896-26799028)
chr3 (67-166)||(19622941-19623040)
chr3 (43-166)||(51825619-51825742)
chr3 (45-166)||(49122002-49122123)
chr3 (43-167)||(54653964-54654088)
chr3 (14-128)||(47765472-47765585)
chr3 (1-90)||(34902950-34903038)
chr3 (18-128)||(21127958-21128068)
chr3 (16-166)||(51400210-51400360)
chr3 (38-107)||(29537135-29537204)
chr3 (14-78)||(23559902-23559966)
chr3 (43-111)||(32973189-32973257)
chr3 (1-61)||(32979188-32979248)
chr3 (98-166)||(41387486-41387554)
chr3 (43-167)||(42632700-42632824)
[»] chr2 (29 HSPs)
chr2 (66-164)||(4701508-4701606)
chr2 (14-166)||(10367234-10367386)
chr2 (4-167)||(23177667-23177831)
chr2 (4-167)||(23588924-23589088)
chr2 (14-119)||(26205055-26205160)
chr2 (1-113)||(14714540-14714652)
chr2 (1-79)||(7983651-7983729)
chr2 (1-166)||(29424568-29424733)
chr2 (17-166)||(37869012-37869161)
chr2 (14-166)||(12959674-12959826)
chr2 (16-166)||(7036961-7037111)
chr2 (14-125)||(14509245-14509356)
chr2 (14-111)||(4512156-4512253)
chr2 (1-61)||(21010454-21010514)
chr2 (16-76)||(35799597-35799657)
chr2 (11-70)||(32614476-32614535)
chr2 (1-111)||(12852936-12853046)
chr2 (14-164)||(28109838-28109988)
chr2 (43-136)||(2305565-2305658)
chr2 (102-163)||(10368442-10368503)
chr2 (16-113)||(41296425-41296522)
chr2 (67-111)||(3665274-3665318)
chr2 (21-112)||(8537061-8537152)
chr2 (38-165)||(23178875-23179002)
chr2 (38-165)||(23590132-23590259)
chr2 (44-129)||(35801044-35801129)
chr2 (1-50)||(45047453-45047502)
chr2 (98-166)||(4829460-4829528)
chr2 (102-166)||(12958412-12958475)
[»] chr5 (19 HSPs)
chr5 (14-162)||(40058017-40058165)
chr5 (68-166)||(41905170-41905268)
chr5 (38-166)||(5384339-5384467)
chr5 (14-166)||(19525257-19525409)
chr5 (43-163)||(10085843-10085963)
chr5 (58-166)||(18677971-18678079)
chr5 (1-136)||(18693723-18693858)
chr5 (38-164)||(1273086-1273212)
chr5 (18-128)||(42510147-42510257)
chr5 (44-165)||(40059327-40059448)
chr5 (1-136)||(21387662-21387797)
chr5 (44-166)||(1663182-1663304)
chr5 (16-166)||(5382937-5383087)
chr5 (1-79)||(7426723-7426801)
chr5 (102-167)||(19523977-19524042)
chr5 (45-164)||(12933748-12933867)
chr5 (102-164)||(12947909-12947971)
chr5 (85-166)||(6629726-6629807)
chr5 (67-127)||(15510285-15510345)
[»] scaffold0098 (1 HSPs)
scaffold0098 (1-79)||(40990-41068)
[»] scaffold0003 (1 HSPs)
scaffold0003 (16-165)||(47066-47215)
[»] scaffold1974 (1 HSPs)
scaffold1974 (4-166)||(587-749)
[»] scaffold1878 (1 HSPs)
scaffold1878 (4-166)||(525-687)
[»] scaffold0290 (1 HSPs)
scaffold0290 (4-166)||(9437-9599)
[»] scaffold0007 (1 HSPs)
scaffold0007 (44-164)||(145868-145988)
[»] scaffold0084 (1 HSPs)
scaffold0084 (4-136)||(13163-13295)
[»] scaffold0122 (1 HSPs)
scaffold0122 (14-73)||(16033-16092)
[»] scaffold0045 (1 HSPs)
scaffold0045 (1-161)||(77135-77297)
[»] scaffold0051 (2 HSPs)
scaffold0051 (1-61)||(39857-39917)
scaffold0051 (98-136)||(22153-22190)
[»] scaffold0046 (1 HSPs)
scaffold0046 (74-166)||(24844-24936)
[»] scaffold0024 (1 HSPs)
scaffold0024 (38-166)||(72979-73107)
[»] scaffold0025 (1 HSPs)
scaffold0025 (20-164)||(56675-56819)


Alignment Details
Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 14109027 - 14109182
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaaca 100  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||| | |||    
T  14109027 cacctttaaacatggttcaccttagacatttgatgttaaaaactaacggagaggactaaaacggtaaacggcaaaagacat--gggaccagtttgagaca 14109124  T
Q  101 ttttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatat 158  Q
    ||||||||||||| || |||||||||||| |||||| | |||||  ||||||||||||    
T  14109125 ttttatagttaagggaccaaagtgaaaattaaaaataagttaagggaccaaatgatat 14109182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 14418984 - 14419139
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaaca 100  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||| | |||    
T  14418984 cacctttaaacatggttcaccttagacatttgatgttaaaaactaacggagaggactaaaacggtaaacggcaaaagacat--gggaccagtttgagaca 14419081  T
Q  101 ttttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatat 158  Q
    ||||||||||||| || |||||||||||| |||||| | |||||  ||||||||||||    
T  14419082 ttttatagttaagggaccaaagtgaaaattaaaaataagttaagggaccaaatgatat 14419139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 15 - 167
Target Start/End: Complemental strand, 4857347 - 4857195
Alignment:
Q  15 gttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaaga 114  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||  |  |||||||  |  | |||||||||||||| |     
T  4857347 gttcaccttagacatttgatgttaaaaactaacggagaggactaaaacagtaaacggcagaagatttgtgggaccaaatcgagacattttatagttaggg 4857248  T
Q  115 gatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcca 167  Q
    || ||||||||||| ||||||| | |||||  | |||||||| ||||| ||||    
T  4857247 gaccaaagtgaaaaccaaaaataagttaagggatcaaatgatgtattaggcca 4857195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 167
Target Start/End: Original strand, 46458682 - 46458835
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaag 113  Q
    |||||||||||||||||| | ||||||| | |||||||||||| |||| ||||||||| ||||||  || |||||||  || | ||| ||||||||||||    
T  46458682 ggttcaccttagacatttaaggttaaaaacaaacggagaggaccaaaatggtaaacggaagaagatttatgggaccaaattgagacactttatagttaag 46458781  T
Q  114 agatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcca 167  Q
     || |||| |||||||||||||||| |||||  |||||| ||| ||||||||||    
T  46458782 ggaccaaattgaaaatcaaaaattacttaagggaccaaacgatgtattaagcca 46458835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 2 - 166
Target Start/End: Complemental strand, 38406177 - 38406013
Alignment:
Q  2 acctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacat 101  Q
    ||||||||| | ||||||||||||||||||||||||||||  ||||||| ||||| ||||| ||||||| |||||||  || || |||||||| | |||     
T  38406177 acctttaaatatggttcaccttagacatttgatgttaaaaattaacggaaaggaccaaaacagtaaacgtcagaagatttatggaaccagtttgagacac 38406078  T
Q  102 tttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
    |||||||||| | || |||| |||||| ||||||| ||||||   ||||||| || |||||||||    
T  38406077 tttatagttaggggaccaaaatgaaaaccaaaaataaattaaaggaccaaataatgtattaagcc 38406013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 38 - 166
Target Start/End: Complemental strand, 14107955 - 14107827
Alignment:
Q  38 aaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaatt 137  Q
    |||| |||||||||||||| |||||||| |||| ||||||| ||||||||||| ||| | ||| |||||||||||| || |||| |||||| |||||||     
T  14107955 aaaaactaacggagaggaccaaaacggtgaacgacagaagatataagggaccactttgagacactttatagttaagggaccaaaatgaaaaccaaaaata 14107856  T
Q  138 aattaagtaaccaaatgatatattaagcc 166  Q
    | |||| | |||||||||| |||||||||    
T  14107855 agttaaatgaccaaatgatgtattaagcc 14107827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 38 - 166
Target Start/End: Complemental strand, 14417912 - 14417784
Alignment:
Q  38 aaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaatt 137  Q
    |||| |||||||||||||| |||||||| |||| ||||||| ||||||||||| ||| | ||| |||||||||||| || |||| |||||| |||||||     
T  14417912 aaaaactaacggagaggaccaaaacggtgaacgacagaagatataagggaccactttgagacactttatagttaagggaccaaaatgaaaaccaaaaata 14417813  T
Q  138 aattaagtaaccaaatgatatattaagcc 166  Q
    | |||| | |||||||||| |||||||||    
T  14417812 agttaaatgaccaaatgatgtattaagcc 14417784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 67 - 164
Target Start/End: Original strand, 38408296 - 38408393
Alignment:
Q  67 aacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaag 164  Q
    |||||||||||||||||||||||| ||| | ||| ||||||||||   || ||||||||||||||||||| |||||||  ||||||||||||||||||    
T  38408296 aacggcagaagacataagggaccaatttgagacactttatagttagaggaccaaagtgaaaatcaaaaataaattaagggaccaaatgatatattaag 38408393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 40930578 - 40930413
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaaca 100  Q
    |||||| || || ||| ||||||||| |||||||||||||| ||||  |||||||||||||||||||||  || ||||  || |||||||  || |||||    
T  40930578 caccttgaatcatggtccaccttagatatttgatgttaaaaactaatagagaggactaaaacggtaaacatcaaaagatttatgggaccaaattgaaaca 40930479  T
Q  101 ttttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
     |||||||||| | || ||||||||||| ||||||| ||| |||  | |||| ||| |||||||||    
T  40930478 ctttatagttaggggaccaaagtgaaaaccaaaaataaatcaagggatcaaacgatgtattaagcc 40930413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 35315199 - 35315267
Alignment:
Q  22 ttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggacca 90  Q
    |||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||||| || |||||||    
T  35315199 ttagacatttgatgttaaaaactaacagagaggactaaaacagtaaacgacagaagacttatgggacca 35315267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 43930462 - 43930316
Alignment:
Q  18 caccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagat 117  Q
    |||||||||||||| | |||||||  |||| |||||||| ||||  ||||||| |||||||  ||  ||||||  || | || ||| ||||||| | ||     
T  43930462 caccttagacatttaaggttaaaaattaacagagaggaccaaaatagtaaacgacagaagatttataggaccaaattgagacgtttaatagttaggggac 43930363  T
Q  118 caaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaag 164  Q
    ||||||||||||||||||| | |||||  ||||||||||||||||||    
T  43930362 caaagtgaaaatcaaaaataagttaagggaccaaatgatatattaag 43930316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 13286965 - 13287070
Alignment:
Q  16 ttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagag 115  Q
    |||| ||||||||||| | ||||||| |||||| ||||||| ||||  |||||| ||| ||||||||||||||||  || ||||| || ||||||||| |    
T  13286965 ttcatcttagacatttaaggttaaaaactaacgaagaggaccaaaatagtaaacagcataagacataagggaccaaattgaaacacttaatagttaaggg 13287064  T
Q  116 atcaaa 121  Q
    ||||||    
T  13287065 atcaaa 13287070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 4167611 - 4167533
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagac 79  Q
    |||||||||||| ||||||||||||| ||||||||||||||  | || || | ||||||||| ||||||| ||||||||    
T  4167611 cacctttaaacatggttcaccttagaaatttgatgttaaaaattgacagaaatgactaaaacagtaaacgacagaagac 4167533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 119
Target Start/End: Original strand, 24495011 - 24495125
Alignment:
Q  5 tttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacatttt 104  Q
    |||||| | ||||||| |||||||||||||||||||| |||||||||||||| |||   |  ||| | |||||||||||||||||| ||| | |  ||||    
T  24495011 tttaaatatggttcactttagacatttgatgttaaaaactaacggagaggaccaaacgaggtaacagaagaagacataagggaccaatttgagaggtttt 24495110  T
Q  105 atagttaagagatca 119  Q
     |||||||| |||||    
T  24495111 ttagttaagggatca 24495125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 172
Target Start/End: Original strand, 40926512 - 40926646
Alignment:
Q  38 aaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaatt 137  Q
    ||||| ||||||||||||| |||||||||||||| |||| |  ||  ||||||  || | ||| |||||||||| | || ||||||||||| |||||||     
T  40926512 aaaagttaacggagaggaccaaaacggtaaacggtagaaaatttataggaccaaattgagacactttatagttaggggaccaaagtgaaaaccaaaaata 40926611  T
Q  138 aattaagtaaccaaatgatatattaagccactaaa 172  Q
    | |||||  || ||||||| |||||||||| ||||    
T  40926612 agttaagggactaaatgatgtattaagccaataaa 40926646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 49162382 - 49162282
Alignment:
Q  16 ttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagag 115  Q
    |||| |||||| |||| | ||||||| |||||| || |||| ||||  | ||||||||||| ||||||||||||| ||| |||| |||| ||||||||||    
T  49162382 ttcatcttagatatttaaggttaaaaactaacgaagtggaccaaaataggaaacggcagaatacataagggaccaattttaaacgttttttagttaagag 49162283  T
Q  116 a 116  Q
    |    
T  49162282 a 49162282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 4974091 - 4974170
Alignment:
Q  87 accagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
    |||| |||||||| ||| ||||||||||||||||| |||||||  ||||| |||||||  || ||||||| |||||||||    
T  4974091 accaatttaaaacgtttaatagttaagagatcaaattgaaaattgaaaataaattaagggactaaatgatctattaagcc 4974170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 44 - 166
Target Start/End: Original strand, 46674933 - 46675055
Alignment:
Q  44 taacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaattaa 143  Q
    ||||||||||||| ||||  |||||||||| ||||  || |||||||  |  | ||| |||||||||||| ||||||| |||||| ||||||| | ||||    
T  46674933 taacggagaggaccaaaatagtaaacggcaaaagatttatgggaccaaatcgagacactttatagttaagggatcaaattgaaaaccaaaaataagttaa 46675032  T
Q  144 gtaaccaaatgatatattaagcc 166  Q
    |  | |||||||| |||||||||    
T  46675033 gggatcaaatgatgtattaagcc 46675055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 167
Target Start/End: Complemental strand, 25153761 - 25153652
Alignment:
Q  58 aaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgata 157  Q
    |||||||||||||| ||||||  || |||||||  || | ||| |||||||||| | || |||| |||||||| ||||| | |||||  ||||||||||     
T  25153761 aaaacggtaaacggaagaagatttatgggaccaaattgagacactttatagttaggggaccaaattgaaaatcgaaaataagttaagggaccaaatgatg 25153662  T
Q  158 tattaagcca 167  Q
    ||||||||||    
T  25153661 tattaagcca 25153652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 163
Target Start/End: Original strand, 25154905 - 25155054
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaag 113  Q
    |||||||||||||||||| | ||||||| | |||||||| ||| |||| | ||||| | ||||||  || | ||  |  || | ||| ||||||||||||    
T  25154905 ggttcaccttagacatttaaggttaaaaacaaacggagatgaccaaaatgataaacagaagaagatttatgagattaaattgagacactttatagttaag 25155004  T
Q  114 agatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaa 163  Q
     ||||||| |||||| ||||||| | |||||  |||||||||| ||||||    
T  25155005 ggatcaaattgaaaaccaaaaataagttaagggaccaaatgatgtattaa 25155054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 163
Target Start/End: Complemental strand, 48671137 - 48671076
Alignment:
Q  102 tttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaa 163  Q
    |||||||||||||||||||| | |||| ||||||| |||||||  |||||||||| ||||||    
T  48671137 tttatagttaagagatcaaattaaaaaccaaaaataaattaagagaccaaatgatgtattaa 48671076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 4858348 - 4858464
Alignment:
Q  49 gagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaac 148  Q
    ||||||| |||||  ||||||  |||||||  || |||||||  || | |||||||||||||| | ||||||||||||||  |||||| | |||||  ||    
T  4858348 gagaggattaaaatagtaaacaacagaagatttatgggaccaaattgagacattttatagttaggggatcaaagtgaaaactaaaaataagttaagggac 4858447  T
Q  149 caaatgatatattaagc 165  Q
    |||||||| ||||||||    
T  4858448 caaatgatgtattaagc 4858464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 167
Target Start/End: Complemental strand, 19278471 - 19278347
Alignment:
Q  43 ctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaatta 142  Q
    |||||| ||||||| ||||  |||||||||||||||  || |||||||  || | ||| |||||| ||||| || |||| |||||  ||||||| | |||    
T  19278471 ctaacgaagaggaccaaaatagtaaacggcagaagaattatgggaccaaattgagacactttataattaagggaccaaaatgaaatccaaaaataagtta 19278372  T
Q  143 agtaaccaaatgatatattaagcca 167  Q
    ||  |||||||||| ||||||||||    
T  19278371 agggaccaaatgatgtattaagcca 19278347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 26406272 - 26406208
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 78  Q
    |||||||||||||||||| | |||||||  ||||||||| ||| |||| | ||||||||||||||    
T  26406272 ggttcaccttagacatttaaggttaaaaaataacggagatgaccaaaatgttaaacggcagaaga 26406208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 46457129 - 46457065
Alignment:
Q  102 tttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
    |||||||||||| ||||||| |||||| ||||||| | ||||| ||||||| ||| |||||||||    
T  46457129 tttatagttaagggatcaaattgaaaaccaaaaataagttaaggaaccaaacgatgtattaagcc 46457065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 167
Target Start/End: Complemental strand, 22744863 - 22744740
Alignment:
Q  44 taacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaattaa 143  Q
    ||||||||| ||| ||||  |||||||||| ||||  ||  ||||||  || ||||| |||||||||| | ||  ||| |||||||||||||| | ||||    
T  22744863 taacggagaagaccaaaatagtaaacggcataagatttataggaccaaattgaaacactttatagttaggggactaaattgaaaatcaaaaataagttaa 22744764  T
Q  144 gtaaccaaatgatatattaagcca 167  Q
    |  |||||||||| ||||||||||    
T  22744763 gggaccaaatgatgtattaagcca 22744740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 166
Target Start/End: Original strand, 43007647 - 43007770
Alignment:
Q  43 ctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaatta 142  Q
    ||||||||||| |||||||  ||||||| || ||||| || |||||||  || | ||| ||||||||||   || |||| |||||||||||||| | ||     
T  43007647 ctaacggagagaactaaaatagtaaacgacataagacttatgggaccaaattgagacactttatagttagaggaccaaattgaaaatcaaaaataagttg 43007746  T
Q  143 agtaaccaaatgatatattaagcc 166  Q
    |   ||||||||||||||||||||    
T  43007747 aaggaccaaatgatatattaagcc 43007770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 14206796 - 14206690
Alignment:
Q  38 aaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaatt 137  Q
    |||| |||||||||| ||  ||||  ||||||| |||||||  ||  ||||||  || |||||||||||||||| | || ||||||||||| |||||||     
T  14206796 aaaaactaacggagatgagcaaaatagtaaacgacagaagatttataggaccaaattgaaacattttatagttaggcgaccaaagtgaaaaccaaaaata 14206697  T
Q  138 aattaag 144  Q
    |||||||    
T  14206696 aattaag 14206690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 14215486 - 14215380
Alignment:
Q  38 aaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaatt 137  Q
    |||| |||||||||| ||  ||||  ||||||| |||||||  ||  ||||||  || |||||||||||||||| | || ||||||||||| |||||||     
T  14215486 aaaaactaacggagatgagcaaaatagtaaacgacagaagatttataggaccaaattgaaacattttatagttaggcgaccaaagtgaaaaccaaaaata 14215387  T
Q  138 aattaag 144  Q
    |||||||    
T  14215386 aattaag 14215380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 166
Target Start/End: Original strand, 13446651 - 13446779
Alignment:
Q  38 aaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagtt-aagagatcaaagtgaaaatcaaaaat 136  Q
    |||| |||||||||||||| || |   ||||||||||||||  || |||||||  || | ||| | ||||||| |||| | ||||||||||| |||||||    
T  13446651 aaaaactaacggagaggaccaatataataaacggcagaagatttatgggaccaaattgagacactatatagttgaaga-accaaagtgaaaaccaaaaat 13446749  T
Q  137 taattaagtaaccaaatgatatattaagcc 166  Q
     | |||||| |||||||||| |||||||||    
T  13446750 aagttaagtgaccaaatgatgtattaagcc 13446779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 43931942 - 43931987
Alignment:
Q  121 agtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
    ||||||||| |||||| ||||||| ||||||||||| |||||||||    
T  43931942 agtgaaaataaaaaataaattaaggaaccaaatgatgtattaagcc 43931987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 44113576 - 44113471
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaag 113  Q
    ||||||||||||| ||||   ||||||| |||||| || |||| ||||  |  |||||||||| ||||||||||||| ||| | || |||| ||||||||    
T  44113576 ggttcaccttagatatttatggttaaaaactaacgaagtggaccaaaataggtaacggcagaatacataagggaccaatttgagacgttttttagttaag 44113477  T
Q  114 agatca 119  Q
     |||||    
T  44113476 ggatca 44113471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 45719674 - 45719610
Alignment:
Q  102 tttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
    |||||||||| | ||||||| |||||||||||||| ||||||   ||||||  ||||||||||||    
T  45719674 tttatagttaggggatcaaactgaaaatcaaaaataaattaaaggaccaaagcatatattaagcc 45719610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 2e-35; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 4 - 167
Target Start/End: Original strand, 49141455 - 49141618
Alignment:
Q  4 ctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattt 103  Q
    ||||||| | |||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||| |  || ||||||| ||| ||||| ||    
T  49141455 ctttaaatatggttcaccttagacatttgatgttaaaaactaacggagatgactaaaatggtaaacggcagaaaaattatgggaccaatttgaaacactt 49141554  T
Q  104 tatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcca 167  Q
     ||||||||| |||| ||||||||| ||||||| ||||||   |||||| ||| ||||||||||    
T  49141555 aatagttaagggatcgaagtgaaaaccaaaaataaattaaaggaccaaacgatgtattaagcca 49141618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 44977381 - 44977215
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaaca 100  Q
    |||||||||| | |||||||||||||||||||||||||||| ||||| |||| ||| |||   |  |||||||||||||||||||||||||||||| |||    
T  44977381 cacctttaaatatggttcaccttagacatttgatgttaaaaactaacagagatgaccaaatgaggtaacggcagaagacataagggaccagtttaagaca 44977282  T
Q  101 ttttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcca 167  Q
     |||||||||| | || ||||||||||| ||||||| | |||||  ||||||| || ||||||||||    
T  44977281 ctttatagttaggggaccaaagtgaaaaccaaaaataagttaagggaccaaataatgtattaagcca 44977215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 52742932 - 52743098
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaaca 100  Q
    |||||||||||| ||||||||||| |||||||||||||||| |||||||||||||| | ||| ||||||| || || || |||||||||| ||| | |||    
T  52742932 cacctttaaacatggttcaccttaaacatttgatgttaaaaactaacggagaggaccataacagtaaacgacataaaacctaagggaccaatttgagaca 52743031  T
Q  101 ttttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcca 167  Q
     |||||||||| | || |||||||||||| |||||| |  ||||  |||||||||| ||||||||||    
T  52743032 ctttatagttaggggaccaaagtgaaaatgaaaaataagctaagggaccaaatgatgtattaagcca 52743098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 9633935 - 9633865
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacgg 71  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||||||  ||||| ||||||||    
T  9633935 cacctttaaacatggttcaccttagacatttgatgttaaaaactaacggagaggatcaaaactgtaaacgg 9633865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 14764389 - 14764269
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaaca 100  Q
    |||||||||| | ||||||||||| |||||| ||||||||| ||||| |||| ||||||||| ||||||| |||||||| || | |||||  |||| |||    
T  14764389 cacctttaaataaggttcaccttaaacatttaatgttaaaaactaacagagatgactaaaacagtaaacgacagaagacttatgagaccaaattaacaca 14764290  T
Q  101 ttttatagttaagagatcaaa 121  Q
     || ||| ||||| |||||||    
T  14764289 cttaataattaagggatcaaa 14764269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 51218925 - 51219032
Alignment:
Q  4 ctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattt 103  Q
    ||||||| | ||||||| |||||||||||||||||||| |||||||||||||| ||    || ||||| |||||||||||||||||| ||| | || |||    
T  51218925 ctttaaatatggttcactttagacatttgatgttaaaaactaacggagaggaccaattgagttaacggaagaagacataagggaccaatttgagacgttt 51219024  T
Q  104 tatagtta 111  Q
    | ||||||    
T  51219025 tttagtta 51219032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 50678523 - 50678361
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaaca 100  Q
    |||||||||| | |||||||||||||  ||||||||||||| ||||| |||||||| ||||  |  ||||||||| ||  |||||  |||  || | |||    
T  50678523 cacctttaaatatggttcaccttagagttttgatgttaaaaactaacagagaggaccaaaagaggtaacggcaga-gatttaagg--ccaaattgagaca 50678427  T
Q  101 ttttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
    ||||||||||||| ||||||| ||||| |||||||| | |||||  ||||||| || |||||||||    
T  50678426 ttttatagttaagggatcaaaatgaaattcaaaaataagttaagggaccaaatcatgtattaagcc 50678361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 26056103 - 26056238
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaaca 100  Q
    |||||||||| | ||||||| |||||| ||||||||||||| |||||||||||||| ||||  ||||||| || ||||  || |||||||  || | |||    
T  26056103 cacctttaaatatggttcactttagacttttgatgttaaaatctaacggagaggaccaaaatagtaaacgacaaaagatttatgggaccaaattgagaca 26056202  T
Q  101 ttttatagttaagagatcaaagtgaaaatcaaaaat 136  Q
     |||||||||| | || |||| |||||  |||||||    
T  26056203 ctttatagttaggggaccaaaatgaaatccaaaaat 26056238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 27689443 - 27689354
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggacca 90  Q
    |||||||||| | ||||||| ||||||||||| |||||||| |||||||||||||| ||||  |  |||| ||||| ||||||| |||||    
T  27689443 cacctttaaatatggttcactttagacatttggtgttaaaaactaacggagaggaccaaaagaggtaacgacagaaaacataagagacca 27689354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 51726813 - 51726877
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 78  Q
    |||||||||||||||||| | ||||||| ||||||| |||||||||||  ||||||| |||||||    
T  51726813 ggttcaccttagacatttaaggttaaaaactaacggtgaggactaaaatagtaaacgacagaaga 51726877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 36509954 - 36509859
Alignment:
Q  18 caccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaag 113  Q
    |||| ||||||||||| ||||||| ||||||||||| || ||||  |||||||||||||||  || || ||||  || ||||| ||||||||||||    
T  36509954 caccatagacatttgaggttaaaaactaacggagagaaccaaaatagtaaacggcagaagatttatggaaccaaattgaaacactttatagttaag 36509859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 37624539 - 37624586
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaa 61  Q
    ||||||| |||||||||||||||||||| |||||||||||||| ||||    
T  37624539 ggttcactttagacatttgatgttaaaaactaacggagaggaccaaaa 37624586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 163
Target Start/End: Complemental strand, 29264951 - 29264870
Alignment:
Q  81 taagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaa 163  Q
    ||||||||||  |||| ||||||||||||||   ||||||| |||||||||||||| | |||||  |||||||||||||||||    
T  29264951 taagggaccaaattaagacattttatagttagaggatcaaattgaaaatcaaaaataagttaag-gaccaaatgatatattaa 29264870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 47560256 - 47560134
Alignment:
Q  44 taacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaattaa 143  Q
    ||||||||| ||| ||||| ||||||||||||| |  ||| ||| ||  || ||||| |||||||||| | || ||||||||||||| ||||| |  |||    
T  47560256 taacggagatgaccaaaacagtaaacggcagaatatttaaaggatcaaattgaaacactttatagttaggggaccaaagtgaaaatcgaaaataaggtaa 47560157  T
Q  144 gtaaccaaatgatatattaagcc 166  Q
    |  |||||||||| |||||||||    
T  47560156 gggaccaaatgatgtattaagcc 47560134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 167
Target Start/End: Complemental strand, 21277141 - 21276988
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaag 113  Q
    |||||||||||||||||| | || |||| |||| ||||||||  ||||  |||||||||||||||  || |||||||  || | | | |||||||||| |    
T  21277141 ggttcaccttagacatttaaggtcaaaaactaatggagaggatcaaaatagtaaacggcagaagatttatgggaccaaattgagatactttatagttagg 21277042  T
Q  114 agatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcca 167  Q
      | |||| |||||| ||||||| | |||||  ||||||| || ||||||||||    
T  21277041 caaccaaattgaaaaccaaaaataagttaagggaccaaataatgtattaagcca 21276988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 23082082 - 23082194
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaaca 100  Q
    |||||||||| | ||||||| ||||| ||||| |||||||| |||||||| ||||| ||||  |  |||| ||||| | |||||||||||  || ||||     
T  23082082 cacctttaaatatggttcactttagatatttggtgttaaaaactaacggaaaggaccaaaagaggcaacgacagaaaatataagggaccaaattgaaacg 23082181  T
Q  101 ttttatagttaag 113  Q
    |||| ||||||||    
T  23082182 ttttttagttaag 23082194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 166
Target Start/End: Original strand, 3979311 - 3979434
Alignment:
Q  43 ctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaatta 142  Q
    |||||||||||||| ||||  |||||||||||||||  || |||||||  || | ||| |||||||||||| || |||| |||||  ||||||| | |||    
T  3979311 ctaacggagaggaccaaaatagtaaacggcagaagaattatgggaccaaattgagacactttatagttaagggaccaaaatgaaatccaaaaataagtta 3979410  T
Q  143 agtaaccaaatgatatattaagcc 166  Q
    ||  ||||||| || ||| |||||    
T  3979411 agggaccaaataatgtatcaagcc 3979434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 3978161 - 3978039
Alignment:
Q  44 taacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaattaa 143  Q
    ||||||||||||| ||||  ||||||| |||||||  || |||| ||  || | ||| |||||||||||  || |||| ||||| |||||||| | ||||    
T  3978161 taacggagaggaccaaaatagtaaacgacagaagaattatgggatcaaattgagacactttatagttaaaggaccaaaatgaaattcaaaaataagttaa 3978062  T
Q  144 gtaaccaaatgatatattaagcc 166  Q
    |  |||||||||| |||||||||    
T  3978061 gggaccaaatgatgtattaagcc 3978039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 164
Target Start/End: Complemental strand, 52741611 - 52741485
Alignment:
Q  38 aaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaatt 137  Q
    |||| |||| ||||||||| |||||  |||| | |||||||||||||||| || ||| | ||| ||||||||||   || |||| | ||||  ||||||     
T  52741611 aaaaactaatggagaggaccaaaacaataaatgacagaagacataagggatcaatttgagacactttatagttagaggaccaaaataaaaacgaaaaata 52741512  T
Q  138 aattaagtaaccaaatgatatattaag 164  Q
    | |||||  ||||||||||||||||||    
T  52741511 agttaagggaccaaatgatatattaag 52741485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 30551545 - 30551634
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggacca 90  Q
    ||||||| || | ||||||| |||||||||||||| ||||| |||||||||| ||| ||||  |  ||||  |||| |||||||||||||    
T  30551545 caccttttaatatggttcactttagacatttgatgctaaaaactaacggagatgaccaaaagaggtaacgatagaaaacataagggacca 30551634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 136
Target Start/End: Complemental strand, 13641374 - 13641282
Alignment:
Q  44 taacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaat 136  Q
    ||||||||| ||| ||||  |||||||||||||||  || |||||||  || | ||| |||||||||| | || ||||||||||| |||||||    
T  13641374 taacggagatgaccaaaatagtaaacggcagaagatttatgggaccaaattgagacactttatagttaggggaccaaagtgaaaaccaaaaat 13641282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 35683181 - 35683105
Alignment:
Q  35 gttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagtta 111  Q
    |||||||  ||||||||||||| ||||  |  ||||||||||||||||||||||||  || | ||| ||||||||||    
T  35683181 gttaaaatgtaacggagaggaccaaaagaggtaacggcagaagacataagggaccaaattgagacactttatagtta 35683105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 4 - 165
Target Start/End: Original strand, 18139446 - 18139607
Alignment:
Q  4 ctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattt 103  Q
    ||||||||| |||||||||||||||||||||||||||| |||| ||||||||| |||||  |||||||||||||| ||||||||||| ||| | ||| ||    
T  18139446 ctttaaacatggttcaccttagacatttgatgttaaaaactaatggagaggaccaaaacaataaacggcagaagatataagggaccaatttgagacactt 18139545  T
Q  104 tatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagc 165  Q
    ||||||||   ||||||||||||||   ||||| | |||||  |||||||||| ||||||||    
T  18139546 tatagttagaggatcaaagtgaaaacggaaaataagttaagggaccaaatgatgtattaagc 18139607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 14 - 166
Target Start/End: Complemental strand, 31738510 - 31738358
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaag 113  Q
    ||||||| |||||||||| | ||||||| |||||||||||||| |||| ||||||| ||||||||| || |||||||  || ||||| |||||||||| |    
T  31738510 ggttcacattagacatttaaggttaaaaactaacggagaggaccaaaatggtaaaccgcagaagacttatgggaccaaattgaaacactttatagttagg 31738411  T
Q  114 agatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
     || |||| |||||| ||||||| | |||||  |||||| ||| |||||||||    
T  31738410 ggaccaaattgaaaaccaaaaataagttaagggaccaaaggatgtattaagcc 31738358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 33801991 - 33802137
Alignment:
Q  19 accttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatc 118  Q
    |||||||| |||||||||||||| |||||||||||||| || |||||||||  |||||||  || |||| ||  |||| ||| |||||||||| | || |    
T  33801991 accttagatatttgatgttaaaaactaacggagaggaccaatacggtaaactacagaagatttatgggatcaaattaagacactttatagttaggggacc 33802090  T
Q  119 aaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagc 165  Q
    |||||||||| ||||||| | |||||  |||||||||| ||||||||    
T  33802091 aaagtgaaaaccaaaaataagttaagggaccaaatgatgtattaagc 33802137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 167
Target Start/End: Original strand, 293609 - 293763
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaag 113  Q
    |||||||||||||||||| | |||||||   |||||||||||| |||| |||||||| |||||||| || | |||||  || ||||| |||||| ||| |    
T  293609 ggttcaccttagacatttaaggttaaaaataaacggagaggaccaaaatggtaaacgacagaagacttatgagaccaaattgaaacactttataattagg 293708  T
Q  114 agatcaaagtgaaaa-tcaaaaattaattaagtaaccaaatgatatattaagcca 167  Q
    |||||||| ||||||   |||||| |||||||  ||||||| |||||||||||||    
T  293709 agatcaaattgaaaacaaaaaaataaattaagagaccaaataatatattaagcca 293763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 16 - 165
Target Start/End: Original strand, 27440146 - 27440295
Alignment:
Q  16 ttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagag 115  Q
    |||||||||||||||| | |||||||  ||||||||||||| ||||  |||||||| ||||||  || |||||||  || | ||| |||| ||||||| |    
T  27440146 ttcaccttagacatttaaagttaaaaattaacggagaggaccaaaatagtaaacggaagaagatttatgggaccaaattgagacaatttaaagttaaggg 27440245  T
Q  116 atcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagc 165  Q
    |||||| ||||| |||||||| | |||||  |||||||||| ||||||||    
T  27440246 atcaaaatgaaattcaaaaataagttaagggaccaaatgatgtattaagc 27440295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 13507127 - 13507209
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataa 83  Q
    |||||||||| | ||||||||||| |||||||||||||||| ||||| |||| ||||| ||  |  |||| ||||||||||||    
T  13507127 cacctttaaatatggttcaccttaaacatttgatgttaaaaactaacagagatgactagaagagataacgacagaagacataa 13507209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 33807806 - 33807684
Alignment:
Q  44 taacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaattaa 143  Q
    ||||||||||||| ||||||||||||||||||| |  || || | ||  || | ||| |||||||||||| || ||||||||||| ||||||| | ||||    
T  33807806 taacggagaggaccaaaacggtaaacggcagaaaatttatggcatcaaattgagacactttatagttaagggaccaaagtgaaaaccaaaaataagttaa 33807707  T
Q  144 gtaaccaaatgatatattaagcc 166  Q
    |  | ||||| || |||||||||    
T  33807706 gggatcaaataatgtattaagcc 33807684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 14328743 - 14328850
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaag 113  Q
    |||||||||||||||||| | |||||||  ||||||||||||| ||||  ||||||| || ||||  || | |||||  |||| ||| || |||||||||    
T  14328743 ggttcaccttagacatttaaggttaaaaagtaacggagaggaccaaaatagtaaacgacaaaagaattatgagaccaaattaagacacttaatagttaag 14328842  T
Q  114 agatcaaa 121  Q
     |||||||    
T  14328843 ggatcaaa 14328850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 14421753 - 14421860
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaag 113  Q
    |||||||||||||||||| | |||||||  ||||||||||||| ||||  ||||||| || ||||  || | |||||  |||| ||| || |||||||||    
T  14421753 ggttcaccttagacatttaaggttaaaaagtaacggagaggaccaaaatagtaaacgacaaaagaattatgagaccaaattaagacacttaatagttaag 14421852  T
Q  114 agatcaaa 121  Q
     |||||||    
T  14421853 ggatcaaa 14421860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 136
Target Start/End: Original strand, 22299902 - 22299994
Alignment:
Q  44 taacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaat 136  Q
    ||||||||| ||| ||||  |||||||||||||||  || |||||||  || | ||| |||||||||| | || ||||||||||| |||||||    
T  22299902 taacggagatgaccaaaatagtaaacggcagaagatttatgggaccaaattgagacactttatagttaggggaccaaagtgaaaaccaaaaat 22299994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 207754 - 207921
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaaca 100  Q
    |||||||||||| ||||||||| |||||||||||||||||| |||||||||||||| ||||  |  ||||| ||||||||||||||| || ||| | ||     
T  207754 cacctttaaacatggttcacctaagacatttgatgttaaaaactaacggagaggaccaaaagagataacggaagaagacataagggatcaatttgagacg 207853  T
Q  101 ttttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagccac 168  Q
    |||| || ||| ||||| ||| ||||| |||||||| |||||||  |||||||||| |||||||||||    
T  207854 ttttttaattaggagattaaaatgaaagtcaaaaataaattaagggaccaaatgatgtattaagccac 207921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 6e-33; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 21961983 - 21961816
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaaca 100  Q
    |||||||||||| ||||||||| |||||||||||||||||| |||||||||||||| ||||  |  ||||| ||||||||||||||| || ||| | ||     
T  21961983 cacctttaaacatggttcacctaagacatttgatgttaaaaactaacggagaggaccaaaagagataacggaagaagacataagggatcaatttgagacg 21961884  T
Q  101 ttttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagccac 168  Q
    |||| || ||| ||||| ||| ||||| |||||||| |||||||  |||||||||| |||||||||||    
T  21961883 ttttttaattaggagattaaaatgaaagtcaaaaataaattaagggaccaaatgatgtattaagccac 21961816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 37276199 - 37276363
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaaca 100  Q
    |||||||||| | |||||||||||||| ||||||||||||| ||||| |||||||| || |   ||||||||| ||||  || |||||||  || | |||    
T  37276199 cacctttaaatatggttcaccttagacttttgatgttaaaaactaacagagaggaccaatataataaacggcaaaagatttatgggaccaaattgagaca 37276298  T
Q  101 ttttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagc 165  Q
     |||||||||||| |||||||||||||||||||||| |||||||  |||||||||| ||||||||    
T  37276299 ctttatagttaagggatcaaagtgaaaatcaaaaataaattaagggaccaaatgatgtattaagc 37276363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 10052264 - 10052098
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaaca 100  Q
    |||||||||| | |||||| ||||||||||| ||||||||| |||| ||||| ||| ||||  |  ||||||||| |||||||||||||| ||| | |||    
T  10052264 cacctttaaatatggttcatcttagacatttaatgttaaaaactaaaggagatgaccaaaagaggtaacggcagatgacataagggaccaatttgagaca 10052165  T
Q  101 ttttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcca 167  Q
     |||||| ||| | || ||||||||||||||| ||| | |||||  |||||||||||||||||||||    
T  10052164 ctttataattaggggaccaaagtgaaaatcaagaataagttaagggaccaaatgatatattaagcca 10052098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 5 - 143
Target Start/End: Complemental strand, 7486233 - 7486095
Alignment:
Q  5 tttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacatttt 104  Q
    |||||||| ||||||| |||||||||||||||||||| |||||||||||||| ||||  |||||| ||| ||||  || |||||||  || || || |||    
T  7486233 tttaaacatggttcactttagacatttgatgttaaaaactaacggagaggaccaaaatagtaaacagcaaaagatttatgggaccaaattgaagcacttt 7486134  T
Q  105 atagttaagagatcaaagtgaaaatcaaaaattaattaa 143  Q
    ||||||||| ||||||| |||||| ||||||| ||||||    
T  7486133 atagttaagggatcaaaatgaaaaccaaaaataaattaa 7486095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 14 - 128
Target Start/End: Original strand, 13367019 - 13367133
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaag 113  Q
    |||||||||||||||||| | ||||||| |||||||||||||| ||||  |||||||||||||||  || |||||||  |||||||| ||||||||||||    
T  13367019 ggttcaccttagacatttaaggttaaaaactaacggagaggaccaaaatagtaaacggcagaagatttatgggaccaaattaaaacactttatagttaag 13367118  T
Q  114 agatcaaagtgaaaa 128  Q
     || |||||||||||    
T  13367119 ggaccaaagtgaaaa 13367133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 44103252 - 44103362
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaaca 100  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||  | |||||| |||||||||||| ||||| ||| | ||     
T  44103252 cacctttaaacatggttcaccttagacatttgatgttaaaaactaacggagaggaccaaaagaggaaacggaagaagacataagagaccaatttgagacg 44103351  T
Q  101 ttttatagtta 111  Q
    |||| ||||||    
T  44103352 ttttttagtta 44103362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 117208 - 117073
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaaca 100  Q
    |||||||||||| |  ||||||||||||||||||||||||| |||||||||||||| |||||  |||||| |||||||  || |||| ||  || |||||    
T  117208 cacctttaaacatgactcaccttagacatttgatgttaaaaactaacggagaggaccaaaacaataaacgacagaagatttatgggatcaaattgaaaca 117109  T
Q  101 ttttatagttaagagatcaaagtgaaaatcaaaaat 136  Q
    ||||||| ||| | || |||| |||||| |||||||    
T  117108 ttttataattaggggaccaaaatgaaaaccaaaaat 117073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 39325790 - 39325900
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaaca 100  Q
    ||||||||||||  ||||||||||||||||||||||||||| ||| | |||| ||||||||  |  ||||| |||| ||||||||||||| ||||||||     
T  39325790 cacctttaaacatagttcaccttagacatttgatgttaaaaactagcagagatgactaaaagaggtaacggaagaaaacataagggaccaatttaaaacg 39325889  T
Q  101 ttttatagtta 111  Q
    |||| ||||||    
T  39325890 ttttttagtta 39325900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 39546633 - 39546705
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggca 73  Q
    |||||||||||| |||||| |||| |||||||||||||||| |||||||||| ||| ||||||||||||||||    
T  39546633 cacctttaaacatggttcatcttaaacatttgatgttaaaaactaacggagatgaccaaaacggtaaacggca 39546705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 164
Target Start/End: Original strand, 7487409 - 7487506
Alignment:
Q  67 aacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaag 164  Q
    ||||||||||||| ||||||| | |||||| |||||||||||||| | ||||||||||||||  |||||| ||||||   |||||||||| |||||||    
T  7487409 aacggcagaagacttaagggatccgtttaagacattttatagttaggggatcaaagtgaaaacgaaaaataaattaaaggaccaaatgatgtattaag 7487506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 19913639 - 19913490
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaag 113  Q
    ||||||||||||| |||| | ||||||| |||||||||||||| |||| | ||||| ||||||||| || |||||||  || ||||| ||||||||||      
T  19913639 ggttcaccttagaaatttaaggttaaaaactaacggagaggaccaaaatgataaaccgcagaagacttatgggaccaaattgaaacactttatagttaga 19913540  T
Q  114 agatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaa 163  Q
     || |||| ||||| |||||||| | |||||  |||||| ||| ||||||    
T  19913539 ggaccaaattgaaattcaaaaataagttaagggaccaaaggatgtattaa 19913490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 36756224 - 36756059
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaaca 100  Q
    |||||||||| | | ||||||||||| |||||||||||||| |||||||||| ||| ||||  ||||||| || ||||  || | |||||| || |||||    
T  36756224 cacctttaaatatgattcaccttagaaatttgatgttaaaaactaacggagatgaccaaaatagtaaacgacataagatttatgtgaccagattgaaaca 36756125  T
Q  101 ttttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
     |||||||||| | || |||| | ||||  |||||| | |||||  |||||||||| |||||||||    
T  36756124 ctttatagttatgggaccaaattaaaaactaaaaataagttaagggaccaaatgatgtattaagcc 36756059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 13513576 - 13513470
Alignment:
Q  5 tttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacatttt 104  Q
    |||||| | |||||| |||| ||||||||||||||||||||||||||||||| ||||  |  ||| | |||||||||||||||||| ||| | || ||||    
T  13513576 tttaaatatggttcatcttatacatttgatgttaaaagctaacggagaggaccaaaagaggtaacagaagaagacataagggaccaatttgagacgtttt 13513477  T
Q  105 atagtta 111  Q
     ||||||    
T  13513476 ttagtta 13513470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 13603109 - 13603003
Alignment:
Q  5 tttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacatttt 104  Q
    |||||| | |||||| |||| ||||||||||||||||||||||||||||||| ||||  |  ||| | |||||||||||||||||| ||| | || ||||    
T  13603109 tttaaatatggttcatcttatacatttgatgttaaaagctaacggagaggaccaaaagaggtaacagaagaagacataagggaccaatttgagacgtttt 13603010  T
Q  105 atagtta 111  Q
     ||||||    
T  13603009 ttagtta 13603003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 24069419 - 24069537
Alignment:
Q  18 caccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagat 117  Q
    ||||||||||||||  |||||||| |  ||||| ||||| |||| ||||||||||||||||  || |||||||  || | ||| |||||||||||| |||    
T  24069419 caccttagacatttagtgttaaaaacagacggaaaggaccaaaatggtaaacggcagaagagttatgggaccaaattgagacactttatagttaagggat 24069518  T
Q  118 caaagtgaaaatcaaaaat 136  Q
    |||| |||||| |||||||    
T  24069519 caaaatgaaaaccaaaaat 24069537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 176
Target Start/End: Complemental strand, 36070325 - 36070163
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaag 113  Q
    |||||||||||||||||| | || |||  ||||||| |||||| ||||  |||||||||||||||  || |||| ||  || | ||| |||||||||| |    
T  36070325 ggttcaccttagacatttaaggtcaaagactaacggggaggaccaaaatagtaaacggcagaagatttatgggatcaaattgagacactttatagttagg 36070226  T
Q  114 agatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagccactaaattat 176  Q
     || |||| |||||| ||||||| |||||||  | |||||||| |||||||||  ||||||||    
T  36070225 ggaccaaattgaaaaccaaaaataaattaagggatcaaatgatgtattaagcctataaattat 36070163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 21670211 - 21670114
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagtta 111  Q
    ||||||||||||| |||||||||||||| |||||||||| ||| ||||  |  ||||| |||||||||||||||||| ||| | || |||| ||||||    
T  21670211 ggttcaccttagatatttgatgttaaaaactaacggagaagaccaaaagaggtaacggaagaagacataagggaccaatttgagacgttttttagtta 21670114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 35 - 166
Target Start/End: Complemental strand, 29738417 - 29738286
Alignment:
Q  35 gttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaa 134  Q
    ||||||| | |||||||||||| |||| ||||||||||||||||| || | ||| |  || | ||| ||||||||||| ||| |||| ||||||| ||||    
T  29738417 gttaaaaacaaacggagaggaccaaaaaggtaaacggcagaagacttatgagactaaattgagacactttatagttaatagaccaaattgaaaataaaaa 29738318  T
Q  135 attaattaagtaaccaaatgatatattaagcc 166  Q
    || | |||||  |||||| ||| |||||||||    
T  29738317 ataagttaagggaccaaacgatgtattaagcc 29738286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 41522648 - 41522722
Alignment:
Q  5 tttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagac 79  Q
    |||||||| |||||| |||| | ||||||||||||||  | ||||| ||||||||||| ||||||||||||||||    
T  41522648 tttaaacatggttcatcttaaatatttgatgttaaaaattgacggaaaggactaaaacagtaaacggcagaagac 41522722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 41866959 - 41866889
Alignment:
Q  96 aaacattttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
    ||||| |||||||||||| |||||||||||||||||||||| | |||||  |||||||| | |||||||||    
T  41866959 aaacactttatagttaagggatcaaagtgaaaatcaaaaataagttaagggaccaaatggtgtattaagcc 41866889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 13363534 - 13363623
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggacca 90  Q
    |||||||||| | ||||||| ||||||||||| |||||||| |||||||||||||| ||||  |  |||  ||||| |||||||||||||    
T  13363534 cacctttaaatatggttcactttagacatttggtgttaaaaactaacggagaggaccaaaagaggtaaccacagaaaacataagggacca 13363623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 166
Target Start/End: Complemental strand, 35944055 - 35943902
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaaca-ttttatagttaa 112  Q
    |||||||||||||||||| | ||||||| |||||||||| ||| ||||  |||||| ||| ||||  || |||||||  || | ||| ||||||| ||||    
T  35944055 ggttcaccttagacatttaaagttaaaaactaacggagatgaccaaaatagtaaactgcataagatttatgggaccaaattgagacatttttataattaa 35943956  T
Q  113 gagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
    | || |||| |||||| ||||||| | |||||  |||||| ||| |||||||||    
T  35943955 gggaccaaaatgaaaaccaaaaataagttaagggaccaaacgatgtattaagcc 35943902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 165
Target Start/End: Original strand, 36940032 - 36940153
Alignment:
Q  44 taacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaattaa 143  Q
    ||||||||| ||| ||||  |||||||||||||||  || |  ||||  || ||||| |||||||||| | |||||||||||||| ||||||| | ||||    
T  36940032 taacggagatgaccaaaatagtaaacggcagaagatttatgataccaaattgaaacactttatagttaggggatcaaagtgaaaaccaaaaataagttaa 36940131  T
Q  144 gtaaccaaatgatatattaagc 165  Q
    |  |||||||||| ||||||||    
T  36940132 gggaccaaatgatgtattaagc 36940153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 166
Target Start/End: Original strand, 16363781 - 16363933
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaag 113  Q
    |||||||||||||||||| | ||||| | |||||||||||||| ||||  |||||| ||||| ||  || |||| ||  || | | | ||||||||||      
T  16363781 ggttcaccttagacatttaaagttaataactaacggagaggaccaaaatagtaaacagcagacgatttatgggatcaaattgagatactttatagttaga 16363880  T
Q  114 agatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
     || ||||||||||| ||||||| | |||||  ||||||| ||||||||||||    
T  16363881 ggaccaaagtgaaaaccaaaaataagttaagggaccaaattatatattaagcc 16363933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 166
Target Start/End: Original strand, 10053774 - 10053865
Alignment:
Q  75 aagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
    ||||||||||||||||  || | ||| |||||||||||| || ||||||||||| ||||||| | |||||  || ||||||| |||||||||    
T  10053774 aagacataagggaccaacttgagacactttatagttaagggaccaaagtgaaaaccaaaaataagttaagggactaaatgatgtattaagcc 10053865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 12281736 - 12281878
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaaca 100  Q
    |||||| || || ||| ||| ||||| |||||||||||||| |||||||||||||  |||||||||||| | |||| |  || | ||| |  || | |||    
T  12281736 caccttgaatcatggtccacattagatatttgatgttaaaaactaacggagaggatcaaaacggtaaac-gtagaaaatttacgagacaaaattgagaca 12281834  T
Q  101 ttttatagttaagagatcaaagtgaaaatcaaaaattaattaag 144  Q
     |||||||||| | || ||||||||||||||||||| |||||||    
T  12281835 atttatagttacgggaccaaagtgaaaatcaaaaataaattaag 12281878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 167
Target Start/End: Original strand, 38591010 - 38591129
Alignment:
Q  48 ggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaa 147  Q
    ||||||||| ||||  |||||||||| ||||  || |||||||  || | ||| |||||||||| | || |||| |||||||||||||| | |||||  |    
T  38591010 ggagaggaccaaaatagtaaacggcataagatttatgggaccaaattgagacactttatagttaggggaccaaattgaaaatcaaaaataagttaaggga 38591109  T
Q  148 ccaaatgatatattaagcca 167  Q
    ||||||||| ||||||||||    
T  38591110 ccaaatgatgtattaagcca 38591129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 31624023 - 31623901
Alignment:
Q  44 taacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaattaa 143  Q
    ||||||||||||||||||   |||||| || ||||  || |||||||  || ||||| |||||||||| | || |||| |||||| ||||||| | ||||    
T  31624023 taacggagaggactaaaataataaacgacataagatttatgggaccaaattgaaacactttatagttaggggaccaaattgaaaaccaaaaataagttaa 31623924  T
Q  144 gtaaccaaatgatatattaagcc 166  Q
    |  |||||||||| |||||||||    
T  31623923 gggaccaaatgatgtattaagcc 31623901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 36938841 - 36938764
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 78  Q
    |||||||||| | ||||||| ||||| ||||||||||||||  |||| |||| ||| ||||  |||||||||||||||    
T  36938841 cacctttaaatatggttcactttagatatttgatgttaaaaattaacagagaagaccaaaatagtaaacggcagaaga 36938764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 167
Target Start/End: Original strand, 41867914 - 41868038
Alignment:
Q  43 ctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaatta 142  Q
    |||||||||||||||||||    |||||||| || |  || |||||||  || | ||| |||||||||| | || |||||||||||  |||||| |||||    
T  41867914 ctaacggagaggactaaaataaaaaacggcataaaatttatgggaccaaattgagacactttatagttaggggaccaaagtgaaaactaaaaataaatta 41868013  T
Q  143 agtaaccaaatgatatattaagcca 167  Q
    ||  |||||||||| ||||||||||    
T  41868014 agggaccaaatgatgtattaagcca 41868038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 21267292 - 21267237
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggac 56  Q
    |||||| || || ||| ||||||||| |||||||||||||| ||||||||||||||    
T  21267292 caccttgaatcatggtccaccttagatatttgatgttaaaaactaacggagaggac 21267237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 136
Target Start/End: Complemental strand, 44606286 - 44606164
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaag 113  Q
    |||||||||||||||||| | ||||||| |||| ||||||||  ||||   ||||| | ||||||  || |||||||  || ||||| | |||||||| |    
T  44606286 ggttcaccttagacatttaaggttaaaaactaatggagaggatcaaaataataaacagaagaagatttatgggaccaaattgaaacactatatagttagg 44606187  T
Q  114 agatcaaagtgaaaatcaaaaat 136  Q
     || ||||||||||| |||||||    
T  44606186 ggaccaaagtgaaaaccaaaaat 44606164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 37323411 - 37323342
Alignment:
Q  98 acattttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcca 167  Q
    |||||||||||||| |  | |||| |||||| ||||||| |||||||  |||||||||| ||||||||||    
T  37323411 acattttatagttagggaaccaaattgaaaaccaaaaataaattaagggaccaaatgatgtattaagcca 37323342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 39220824 - 39220755
Alignment:
Q  16 ttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagg 85  Q
    |||||||||||||||| | ||||||| ||||| ||||  || ||||  |||||||||||||||| |||||    
T  39220824 ttcaccttagacatttaaggttaaaaactaacagagataacgaaaatagtaaacggcagaagacttaagg 39220755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 167
Target Start/End: Complemental strand, 39545021 - 39544924
Alignment:
Q  70 ggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcca 167  Q
    ||||||| |||||||||||  |||| | ||| |||||||||||| || || ||||||||   ||||| | |||||  |||||||||| ||||||||||    
T  39545021 ggcagaaaacataagggacttgtttgagacactttatagttaagcgaccagagtgaaaacagaaaataagttaagggaccaaatgatgtattaagcca 39544924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 2421262 - 2421326
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 78  Q
    |||||||||||||||||| | ||||||| |||||  ||||||| ||||   ||||||||||||||    
T  2421262 ggttcaccttagacatttaaggttaaaaactaacaaagaggaccaaaataataaacggcagaaga 2421326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 9e-32; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 39592245 - 39592410
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaaca 100  Q
    |||||||||||| || |||||||||||||||||||||||||  |||||||||| || ||||| ||||||| |||||||||||| |||||| ||| | |||    
T  39592245 cacctttaaacatggctcaccttagacatttgatgttaaaaattaacggagagaaccaaaacagtaaacgacagaagacataatggaccaatttgagaca 39592344  T
Q  101 ttttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
     |||||||||| | ||  ||||||||||   ||||| | |||||  ||||||||||||||||||||    
T  39592345 ctttatagttaggggactaaagtgaaaacataaaataagttaagggaccaaatgatatattaagcc 39592410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 35787956 - 35787821
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaaca 100  Q
    |||||||||||| | || ||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||  || |||||||  || |||||    
T  35787956 cacctttaaacatgatttaccttagacatttgatgttaaaaactaacggagaggaccaaaacggtaaacgacagaagatttatgggaccaaattgaaaca 35787857  T
Q  101 ttttatagttaagagatcaaagtgaaaatcaaaaat 136  Q
    |||||||||||   || ||||||||||| |||||||    
T  35787856 ttttatagttagaggaccaaagtgaaaaccaaaaat 35787821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 86963 - 86798
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaaca 100  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||| ||| ||||| ||||||||||||| |  || |||||||  || | |      
T  86963 cacctttaaacatggttcaccttagacatttgatgttaaaaactaacggagaagaccaaaacagtaaacggcagaatatttatgggaccaaattgagatg 86864  T
Q  101 ttttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
     |||||||||| |  | |||||||||||  |||||| |||||||  || ||||||| |||||||||    
T  86863 ctttatagttagggaaccaaagtgaaaactaaaaataaattaagagactaaatgatgtattaagcc 86798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 166
Target Start/End: Original strand, 6616181 - 6616332
Alignment:
Q  15 gttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaaga 114  Q
    ||||||||| ||||||||||||||||| |||| ||||||||| |||||  |||||| ||||| | ||||||||||| ||| | ||| |||||||||| |     
T  6616181 gttcacctttgacatttgatgttaaaaactaaaggagaggaccaaaacaataaacgacagaatatataagggaccaatttgagacactttatagttaggg 6616280  T
Q  115 gatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
    || |||||||||||   ||||| | |||||  |||||||||| |||||||||    
T  6616281 gaccaaagtgaaaacggaaaataagttaagggaccaaatgatgtattaagcc 6616332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 167
Target Start/End: Original strand, 47668556 - 47668719
Alignment:
Q  4 ctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattt 103  Q
    |||||| || |||| |||||||| |||||||||||||| ||||| |||||||| |||||  ||||||||||| || ||||||||||| ||| | ||| ||    
T  47668556 ctttaaccatggtttaccttagatatttgatgttaaaaactaacagagaggaccaaaacaataaacggcagatgatataagggaccaatttgagacactt 47668655  T
Q  104 tatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcca 167  Q
    |||||||| | || |||||||||||   ||||| | ||||   |||||||||| ||||||||||    
T  47668656 tatagttaggggaccaaagtgaaaacagaaaataagttaaaggaccaaatgatgtattaagcca 47668719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 11094668 - 11094544
Alignment:
Q  19 accttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatc 118  Q
    ||||||||||||||||||||||| |||||| ||||||| ||||| ||||||||||||| |  ||  ||||||  |||| ||| |||||||||| |||| |    
T  11094668 accttagacatttgatgttaaaaactaacgaagaggaccaaaacagtaaacggcagaaaatttataggaccaaattaagacactttatagttaggagacc 11094569  T
Q  119 aaagtgaaaatcaaaaattaattaa 143  Q
    ||||| |||| ||||||| ||||||    
T  11094568 aaagtaaaaaccaaaaataaattaa 11094544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 38 - 166
Target Start/End: Complemental strand, 39591064 - 39590936
Alignment:
Q  38 aaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaatt 137  Q
    |||| ||||| | |||||||||||| ||||||| |||| | |||||||||||||||| | ||| |||||||||| | || ||||||||||| |||||||     
T  39591064 aaaaactaactgcgaggactaaaacagtaaacgacagatggcataagggaccagtttgagacactttatagttaggggaccaaagtgaaaaccaaaaata 39590965  T
Q  138 aattaagtaaccaaatgatatattaagcc 166  Q
    | |||||  |||||||||| |||||||||    
T  39590964 agttaagggaccaaatgatgtattaagcc 39590936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 38 - 166
Target Start/End: Original strand, 21104303 - 21104431
Alignment:
Q  38 aaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaatt 137  Q
    |||||| |||||| ||||| |||| |||||||| ||||||||||| | |||||  || | ||| |||||||||| | || |||| ||||||  ||||||     
T  21104303 aaaagcaaacggaaaggaccaaaatggtaaacgacagaagacatatgagaccaaattgagacactttatagttaggggaccaaaatgaaaacaaaaaata 21104402  T
Q  138 aattaagtaaccaaatgatatattaagcc 166  Q
    | ||||| |||||||||||||||||||||    
T  21104403 atttaaggaaccaaatgatatattaagcc 21104431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 44 - 167
Target Start/End: Complemental strand, 29686373 - 29686250
Alignment:
Q  44 taacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaattaa 143  Q
    ||||||||||||| ||||  |  |||| || |||||||||||||||| ||| | ||| |||||||||||| || ||||||||||| ||||||| | ||||    
T  29686373 taacggagaggaccaaaagaggtaacgacataagacataagggaccaatttgagacaatttatagttaagggaccaaagtgaaaaccaaaaataagttaa 29686274  T
Q  144 gtaaccaaatgatatattaagcca 167  Q
    |  || ||||||| ||||||||||    
T  29686273 gggactaaatgatgtattaagcca 29686250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 43 - 166
Target Start/End: Original strand, 33377362 - 33377485
Alignment:
Q  43 ctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaatta 142  Q
    |||||||||||||| ||||  |||||||||||||||  || |||||||  || | ||| |||||||||| | || |||| |||||||||||||| | |||    
T  33377362 ctaacggagaggaccaaaatagtaaacggcagaagatttatgggaccaaattgagacactttatagttaggggaccaaattgaaaatcaaaaataagtta 33377461  T
Q  143 agtaaccaaatgatatattaagcc 166  Q
    ||  |||||||||| |||||||||    
T  33377462 agggaccaaatgatgtattaagcc 33377485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 36604810 - 36604907
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagtta 111  Q
    |||||| |||||| ||||||| |||||| |||||||||||||| ||||  |  ||||| |||||||||||||||||| ||||| || |||| ||||||    
T  36604810 ggttcatcttagatatttgatattaaaaactaacggagaggaccaaaagaggtaacggaagaagacataagggaccaatttaagacgttttttagtta 36604907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 29687934 - 29688095
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaaca 100  Q
    |||||||||| | ||||| || ||||||||||||||||||| |||| ||||| ||| ||||  |  |||| || |||||||||||||  ||||||| |||    
T  29687934 cacctttaaatatggttcgccgtagacatttgatgttaaaaactaaaggagatgaccaaaagaggtaacgacaaaagacataagggatgagtttaagaca 29688033  T
Q  101 ttttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
     |||||||    | || ||||||||||| ||||||| | |||||  ||||||| || |||||||||    
T  29688034 ctttatag----gggaccaaagtgaaaaccaaaaataagttaagggaccaaataatgtattaagcc 29688095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 17319189 - 17319082
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaag 113  Q
    |||||||||||||||||| | ||||||| ||||||| || ||| ||||  ||||||| |||||||  || || ||||  || ||||| ||||||||||||    
T  17319189 ggttcaccttagacatttaaggttaaaaactaacggtgaagaccaaaatagtaaacgccagaagatttatggaaccaaattgaaacactttatagttaag 17319090  T
Q  114 agatcaaa 121  Q
    ||||||||    
T  17319089 agatcaaa 17319082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 29663789 - 29663660
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaag 113  Q
    |||||||||||||||||| |||||||||   |||||| | ||  |||| ||||||||||||||||  || |||||||  || | ||| ||||||||| ||    
T  29663789 ggttcaccttagacatttaatgttaaaattaaacggaaaagatcaaaatggtaaacggcagaagagttatgggaccaaattgagacaatttatagtt-ag 29663691  T
Q  114 agatcaaagtgaaaatcaaaaattaattaag 144  Q
     ||||||| |||||| ||||||| |||||||    
T  29663690 ggatcaaaatgaaaaccaaaaataaattaag 29663660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 38418973 - 38419051
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagac 79  Q
    ||||| |||| | |||||| |||| || ||| ||||||||| |||||||||| ||||||||| ||||||||||||||||    
T  38418973 cacctataaatatggttcatcttaaacgtttaatgttaaaaactaacggagatgactaaaacagtaaacggcagaagac 38419051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 167
Target Start/End: Original strand, 11114949 - 11115102
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaag 113  Q
    |||||| ||||||||||| | ||||||| |||||||||||| | |||| |||||||| |||||||  || |||||||  || | | | |||||||||| |    
T  11114949 ggttcagcttagacatttaaggttaaaaactaacggagaggtccaaaatggtaaacgacagaagagttatgggaccaaattgagatactttatagttagg 11115048  T
Q  114 agatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcca 167  Q
     || |||| ||||||   ||||| | |||||  |||||||||| ||||||||||    
T  11115049 ggaccaaaatgaaaactgaaaataagttaagggaccaaatgatgtattaagcca 11115102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 164
Target Start/End: Original strand, 55953850 - 55953971
Alignment:
Q  43 ctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaatta 142  Q
    ||||||| |||||| ||||  |||||||||| ||||  || |||||||  || | |||||||||||||| | || |||| |||||||||||||| | |||    
T  55953850 ctaacggggaggaccaaaatagtaaacggcataagatttacgggaccaaattgagacattttatagttatgggaccaaattgaaaatcaaaaataagtta 55953949  T
Q  143 agtaaccaaatgatatattaag 164  Q
    ||  | ||||||||||||||||    
T  55953950 agggatcaaatgatatattaag 55953971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 45 - 167
Target Start/End: Original strand, 28103486 - 28103608
Alignment:
Q  45 aacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaattaag 144  Q
    |||||| ||||| |||| ||||||||||||||| | || |||||||  || | ||| |||||||||||| || |||| |||||  ||||||| | |||||    
T  28103486 aacggaaaggaccaaaatggtaaacggcagaagtcttatgggaccaaattgagacactttatagttaagggaccaaaatgaaatccaaaaataagttaag 28103585  T
Q  145 taaccaaatgatatattaagcca 167  Q
      |||||||||| | ||||||||    
T  28103586 ggaccaaatgatgtgttaagcca 28103608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 80 - 166
Target Start/End: Original strand, 35789625 - 35789711
Alignment:
Q  80 ataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
    |||||||| |||||| ||||| |||||||||| | || ||||||||||| ||||||| | |||||  || ||||||| |||||||||    
T  35789625 ataagggatcagtttgaaacactttatagttacgggaccaaagtgaaaaccaaaaataagttaagagactaaatgatgtattaagcc 35789711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 166
Target Start/End: Complemental strand, 11113866 - 11113737
Alignment:
Q  37 taaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaat 136  Q
    ||||| |||||||| | ||| |||| ||||||||||||||||  || | |||||  || | ||| |||||||||||| ||  ||| |||||| | |||||    
T  11113866 taaaaactaacggaaatgaccaaaatggtaaacggcagaagagttatgagaccaaattgagacactttatagttaagggactaaaatgaaaaccgaaaat 11113767  T
Q  137 taattaagtaaccaaatgatatattaagcc 166  Q
     | |||||| |||||||||| |||||||||    
T  11113766 aagttaagtgaccaaatgatgtattaagcc 11113737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 37559061 - 37558993
Alignment:
Q  98 acattttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
    |||||||||||||| | || |||| |||||| ||||||| | ||||| ||||||||||| |||||||||    
T  37559061 acattttatagttaggggaccaaattgaaaaccaaaaataagttaaggaaccaaatgatgtattaagcc 37558993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 41401677 - 41401729
Alignment:
Q  18 caccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacg 70  Q
    ||||||||||||||||||||||||  ||| ||||||||  |||||||||||||    
T  41401677 caccttagacatttgatgttaaaaattaatggagaggatcaaaacggtaaacg 41401729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 52981143 - 52981215
Alignment:
Q  38 aaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagtt 110  Q
    |||| ||||| | |||||| ||||| ||||||  ||||||||||||||||||||||| ||||| || ||||||    
T  52981143 aaaaactaactgcgaggaccaaaacagtaaacaacagaagacataagggaccagtttgaaacacttgatagtt 52981215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 34438549 - 34438454
Alignment:
Q  18 caccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaag 113  Q
    |||| ||||||||||| ||||||| ||||| ||||| || ||||  |||||||||||||||  || |||||||  || | ||| ||||||||||||    
T  34438549 caccatagacatttgaggttaaaaactaacagagagaaccaaaatagtaaacggcagaagatttatgggaccaaattgagacactttatagttaag 34438454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 166
Target Start/End: Original strand, 15787505 - 15787623
Alignment:
Q  48 ggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaa 147  Q
    ||||||||| |||| ||||||||||| || |  || |||||||  || | ||| |||||||||| | || |||| ||||||  |||||| ||||||| ||    
T  15787505 ggagaggaccaaaatggtaaacggcaaaaaagttatgggaccaaattgagacactttatagttaggggaccaaaatgaaaacaaaaaataaattaaggaa 15787604  T
Q  148 ccaaatgatatattaagcc 166  Q
      |||||||||||||||||    
T  15787605 aaaaatgatatattaagcc 15787623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 30683016 - 30683126
Alignment:
Q  34 tgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaa 133  Q
    |||||||| |||||||||| ||| ||||   | |||||| |||||  || |||||||  || | ||| |||||||||||| || |||| |||||||||||    
T  30683016 tgttaaaaactaacggagaagaccaaaagaattaacggccgaagatttatgggaccaaattgagacactttatagttaagggaccaaaatgaaaatcaaa 30683115  T
Q  134 aattaattaag 144  Q
    ||| |||||||    
T  30683116 aataaattaag 30683126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 34439658 - 34439728
Alignment:
Q  43 ctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaag 113  Q
    |||||||||| ||| ||||  |||||||||||||||  || |||||||  || ||||||||||||||||||    
T  34439658 ctaacggagatgaccaaaatagtaaacggcagaagatttatgggaccaaattgaaacattttatagttaag 34439728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 167
Target Start/End: Complemental strand, 52659027 - 52658905
Alignment:
Q  45 aacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaattaag 144  Q
    |||||| | |||||||  ||||||||||||||||  ||  | ||||  || |||||||||||||||| | || |||||||||||| |||||| | |||||    
T  52659027 aacggaaatgactaaactggtaaacggcagaagatttatagaaccaaattgaaacattttatagttaggggaccaaagtgaaaataaaaaataagttaag 52658928  T
Q  145 taaccaaatgatatattaagcca 167  Q
      ||||||  || ||||||||||    
T  52658927 ggaccaaaacatgtattaagcca 52658905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 96711 - 96764
Alignment:
Q  75 aagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaa 128  Q
    |||||||||||||||| ||||| ||| |||||||||| | || |||||||||||    
T  96711 aagacataagggaccaatttaagacactttatagttaggggaccaaagtgaaaa 96764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 15787095 - 15786947
Alignment:
Q  18 caccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagat 117  Q
    |||||||||||||| | |||||||  ||||||||||||  | || | |||||||||||| |  || |||||||  || | ||| |||||||||| | ||     
T  15787095 caccttagacatttaaggttaaaaattaacggagaggatcataatgataaacggcagaaaagttatgggaccaaattgagacagtttatagttaggggaa 15786996  T
Q  118 caaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
    |||| ||||||  |||||| | ||||   |||||||||| |||||||||    
T  15786995 caaaatgaaaacaaaaaataagttaatggaccaaatgatgtattaagcc 15786947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 44302880 - 44302820
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaa 61  Q
    |||||||||| |  ||||||||||| | ||| ||||||||| |||||||||||||| ||||    
T  44302880 cacctttaaatatagttcaccttagtcttttaatgttaaaaactaacggagaggaccaaaa 44302820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 17350058 - 17350224
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaaca 100  Q
    |||||||||| | |||||||||||||||||||||||||||| |||||||||||||| ||||  |  ||| | ||||||||||||||||||  || | |||    
T  17350058 cacctttaaatatggttcaccttagacatttgatgttaaaaactaacggagaggaccaaaagaggtaacaggagaagacataagggaccaaattgagaca 17350157  T
Q  101 ttttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcca 167  Q
     |||||||||| | || |||| |||||| ||||||| | |||||  |||||||||| ||||||||||    
T  17350158 ctttatagttaggggaacaaattgaaaaccaaaaataagttaagggaccaaatgatgtattaagcca 17350224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 39133177 - 39133015
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaaca 100  Q
    |||||||||| | |||||||||||||||||||||||||||| ||||| |||||||| ||||  |  ||||  ||||||||||||||||||  || | |||    
T  39133177 cacctttaaatatggttcaccttagacatttgatgttaaaaactaacagagaggaccaaaagaggtaacgagagaagacataagggaccaaattgagaca 39133078  T
Q  101 ttttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaa 163  Q
     |||||||||| | || |||| |||||| ||||||| | |||||  | |||||||| ||||||    
T  39133077 ctttatagttaggggaccaaattgaaaaccaaaaataagttaagagatcaaatgatgtattaa 39133015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 166
Target Start/End: Complemental strand, 25583260 - 25583109
Alignment:
Q  15 gttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaaga 114  Q
    |||| |||||||||||| | |||||||  |||| |||||||| ||||  |||||||||||||||| || |||||||  || | || ||| ||||||| |     
T  25583260 gttcgccttagacatttaaggttaaaaattaacagagaggaccaaaatagtaaacggcagaagacttatgggaccaaattgagacgtttaatagttaggg 25583161  T
Q  115 gatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
    || ||||||||||||||||||| | |||||  || ||||||| |||||||||    
T  25583160 gaccaaagtgaaaatcaaaaataagttaagggactaaatgatgtattaagcc 25583109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 7483494 - 7483591
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagtta 111  Q
    ||||||||||||| |||||||||||||| |||||||||| ||| ||||  |  ||||| |||||||||||||||||| ||||| || |||| ||||||    
T  7483494 ggttcaccttagatatttgatgttaaaaactaacggagatgaccaaaagaggtaacggaagaagacataagggaccaatttaagacgttttttagtta 7483591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 166
Target Start/End: Complemental strand, 8371369 - 8371215
Alignment:
Q  12 acggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagtta 111  Q
    ||||||| | ||||| |||||||||||||| |||||||||||||| ||||  |||||| ||||||||  || || ||||  || | ||||||||||||||    
T  8371369 acggttcgctttagatatttgatgttaaaaactaacggagaggaccaaaatagtaaactgcagaagatttatggaaccaaattgagacattttatagtta 8371270  T
Q  112 agagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
     | || |||| ||||||  |||||| | |||||  | |||||||| |||||||||    
T  8371269 ggggaccaaaatgaaaacaaaaaataagttaagggatcaaatgatgtattaagcc 8371215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 11219590 - 11219512
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagac 79  Q
    |||||||||| | |||||||||||||  ||||||||||||| |||||||||| ||| ||||  ||||||||||||||||    
T  11219590 cacctttaaatatggttcaccttagaattttgatgttaaaatctaacggagatgaccaaaatagtaaacggcagaagac 11219512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 19622165 - 19622003
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaaca 100  Q
    ||||||||||||  |||||||||| |||||||||||| ||| |||||||||||||| ||| | |||||  ||||||||  || | ||| |  || | |||    
T  19622165 cacctttaaacatagttcaccttaaacatttgatgttgaaaactaacggagaggaccaaaccagtaaatagcagaagatttatgagactaaattgagaca 19622066  T
Q  101 ttttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaa 163  Q
     |||||||||| | || ||||||||||| ||||||| | ||||   |||||||||| ||||||    
T  19622065 ctttatagttaggggaccaaagtgaaaaccaaaaataacttaaaggaccaaatgatgtattaa 19622003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 53808463 - 53808314
Alignment:
Q  16 ttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagag 115  Q
    ||||||||||| |||||||||||||| |||| ||||| ||| ||||  ||||||| || ||||  || |||||||| || | ||| |||||||||| |||    
T  53808463 ttcaccttagaaatttgatgttaaaaactaatggagatgaccaaaatagtaaacgacataagatttatgggaccagattgagacactttatagttaggag 53808364  T
Q  116 atcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagc 165  Q
    | |||| | |||| | ||||| | |||||  |||||||||| ||||||||    
T  53808363 accaaattcaaaaccgaaaataagttaagggaccaaatgatgtattaagc 53808314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 167
Target Start/End: Original strand, 26798896 - 26799028
Alignment:
Q  35 gttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaa 134  Q
    ||||||| |||||||||||||| |||| |||||||||  |||||  || |||||||  || | |||||||||||||| | || |||| | |||| |||||    
T  26798896 gttaaaaactaacggagaggaccaaaatggtaaacggaggaagaattatgggaccaaattgagacattttatagttaggggaccaaaataaaaaccaaaa 26798995  T
Q  135 attaattaagtaaccaaatgatatattaagcca 167  Q
    || | |||||  |||||||||| ||||||||||    
T  26798996 ataagttaagagaccaaatgatgtattaagcca 26799028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 67 - 166
Target Start/End: Original strand, 19622941 - 19623040
Alignment:
Q  67 aacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
    |||| ||||||||||||||||||||||| | ||| |||||||||| |||| |||||||||||  |||||| | |||||  | ||| |||| |||||||||    
T  19622941 aacgacagaagacataagggaccagtttgagacactttatagttaggagaccaaagtgaaaacaaaaaataagttaagggagcaagtgatgtattaagcc 19623040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 43 - 166
Target Start/End: Original strand, 51825619 - 51825742
Alignment:
Q  43 ctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaatta 142  Q
    |||||||| | ||| ||||  ||||||| |||||||  || |||||||  || ||||| |||||||||||| || ||||||||||  ||||||| | |||    
T  51825619 ctaacggatatgaccaaaatagtaaacgacagaagatttatgggaccaaattgaaacactttatagttaagggaccaaagtgaaatccaaaaataagtta 51825718  T
Q  143 agtaaccaaatgatatattaagcc 166  Q
    ||  ||||||||||||||||||||    
T  51825719 agggaccaaatgatatattaagcc 51825742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 166
Target Start/End: Original strand, 49122002 - 49122123
Alignment:
Q  45 aacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaattaag 144  Q
    |||||| | ||| |||| |||||||||||||| || || | |||||  || | ||| ||||||||||||||| |||| |||||| ||||||| | ||||     
T  49122002 aacggaaaagaccaaaatggtaaacggcagaaaacttatgagaccaaattgagacactttatagttaagagaccaaaatgaaaaccaaaaataagttaaa 49122101  T
Q  145 taaccaaatgatatattaagcc 166  Q
      ||||||||||||||||||||    
T  49122102 ggaccaaatgatatattaagcc 49122123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 167
Target Start/End: Original strand, 54653964 - 54654088
Alignment:
Q  43 ctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaatta 142  Q
    |||||||||||||| ||||  ||||||| |||||||  || |||||||  || | ||| |||||||||||| || |||| |||||  ||||||| | |||    
T  54653964 ctaacggagaggaccaaaatagtaaacgacagaagaattatgggaccaaattgagacactttatagttaagggaccaaaatgaaatccaaaaataagtta 54654063  T
Q  143 agtaaccaaatgatatattaagcca 167  Q
    ||  |||||||||| ||||||||||    
T  54654064 agggaccaaatgatgtattaagcca 54654088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 128
Target Start/End: Complemental strand, 47765585 - 47765472
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaag 113  Q
    ||||||||| ||| |||||||||||||| |||||||||| ||| |||||  |||||  | ||||| |||||||| || ||| | ||| ||||||||| ||    
T  47765585 ggttcacctaagatatttgatgttaaaaactaacggagatgaccaaaacaataaacaacggaagatataagggatcaatttgagacactttatagtt-ag 47765487  T
Q  114 agatcaaagtgaaaa 128  Q
     || |||||||||||    
T  47765486 ggaccaaagtgaaaa 47765472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 34902950 - 34903038
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggacca 90  Q
    |||||||||| | ||||||| ||||||||||| |||||||| |||||||||| ||| ||||  || |||| ||||| ||||||| |||||    
T  34902950 cacctttaaatatggttcactttagacatttggtgttaaaaactaacggagatgaccaaaagagt-aacgacagaaaacataagagacca 34903038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 21128068 - 21127958
Alignment:
Q  18 caccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagat 117  Q
    ||||||||||||||   ||||||| |  ||||| | ||| |||| ||||||||||||||||  || |||||||  || | ||| || |||||||||||||    
T  21128068 caccttagacatttagggttaaaaacagacggaaatgaccaaaatggtaaacggcagaagagttatgggaccaaattgacacacttaatagttaagagat 21127969  T
Q  118 caaagtgaaaa 128  Q
    |||| ||||||    
T  21127968 caaactgaaaa 21127958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 51400360 - 51400210
Alignment:
Q  16 ttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagag 115  Q
    ||||||| |||||||| ||||||||| | |||||| ||||| |||| |||| ||||| ||| |  || ||||| |  || | ||| |||||||||| |      
T  51400360 ttcacctaagacatttaatgttaaaaacaaacggaaaggaccaaaatggtatacggctgaaaatttatgggactaaattgagacactttatagttaggga 51400261  T
Q  116 atcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
    ||||||||||||| ||||||| | |||||  ||||||  || |||||||||    
T  51400260 atcaaagtgaaaaccaaaaataagttaagggaccaaaacatgtattaagcc 51400210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 29537135 - 29537204
Alignment:
Q  38 aaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttata 107  Q
    |||| |||||||||||||| ||||  |||||||||||||||  || ||||| |  |||||||||||||||    
T  29537135 aaaaactaacggagaggaccaaaattgtaaacggcagaagatttatgggacgaaattaaaacattttata 29537204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 23559966 - 23559902
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaaga 78  Q
    |||||| |||||||| || | ||||||| |||||||||||||| ||||  ||||||| |||||||    
T  23559966 ggttcatcttagacaattaaggttaaaaactaacggagaggaccaaaatagtaaacgacagaaga 23559902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 32973257 - 32973189
Alignment:
Q  43 ctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagtta 111  Q
    |||||||||||||| ||||  |  ||||||||||||||||||||||||  || | ||| ||||||||||    
T  32973257 ctaacggagaggacaaaaagaggtaacggcagaagacataagggaccaaattgagacactttatagtta 32973189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 32979248 - 32979188
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaa 61  Q
    |||||||||| |  ||||||||||| | ||| ||||||||| |||||||||||||| ||||    
T  32979248 cacctttaaatatagttcaccttagtcttttaatgttaaaaactaacggagaggaccaaaa 32979188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 41387486 - 41387554
Alignment:
Q  98 acattttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
    |||||||||||||| | || |||| |||||| ||||||| | |||||  |||||||||| |||||||||    
T  41387486 acattttatagttaggggaccaaattgaaaaccaaaaataagttaagggaccaaatgatgtattaagcc 41387554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 167
Target Start/End: Complemental strand, 42632824 - 42632700
Alignment:
Q  43 ctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaatta 142  Q
    |||||||||||||||||||  ||||||| || ||||  || |||| ||  || | ||| |||||||||| | || |||| |||||| ||||| | | |||    
T  42632824 ctaacggagaggactaaaatagtaaacgacataagatttatgggatcaaattgagacactttatagttaggggaccaaattgaaaaccaaaagtaagtta 42632725  T
Q  143 agtaaccaaatgatatattaagcca 167  Q
    ||  |||||||||| ||||||||||    
T  42632724 agggaccaaatgatgtattaagcca 42632700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 1e-27; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 4701508 - 4701606
Alignment:
Q  66 aaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaag 164  Q
    |||||||||||||||||||||| |||||| | ||| |||||||||| | |||||||||||||||||||||| |||||||  ||||||||||||||||||    
T  4701508 aaacggcagaagacataagggatcagtttgagacactttatagttaggggatcaaagtgaaaatcaaaaataaattaagggaccaaatgatatattaag 4701606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 14 - 166
Target Start/End: Complemental strand, 10367386 - 10367234
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaag 113  Q
    |||||||||||||||||| | ||||||| | |||||||| |||||||| ||||||||||||||||| || | ||| |  || | ||| ||||||||||||    
T  10367386 ggttcaccttagacatttaaggttaaaaacaaacggagacgactaaaaaggtaaacggcagaagacttatgagactaaattgagacactttatagttaag 10367287  T
Q  114 agatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
    | | |||| |||||||||||||| | ||||| |||||||  ||||||||||||    
T  10367286 aaaccaaattgaaaatcaaaaataagttaaggaaccaaacaatatattaagcc 10367234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 167
Target Start/End: Complemental strand, 23177831 - 23177667
Alignment:
Q  4 ctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattt 103  Q
    ||||||| | |||||| ||||||  ||| ||||||||| |||||||||||||| |||| ||||||||||||||||  || |||||||  || | ||| ||    
T  23177831 ctttaaatatggttcatcttagattttttatgttaaaaactaacggagaggaccaaaatggtaaacggcagaagatttatgggaccaaattgagacactt 23177732  T
Q  104 tatagtta-agagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcca 167  Q
    ||||||||  | || |||| |||||| ||||||| |||||||  |||||||||| ||||||||||    
T  23177731 tatagttagggggaccaaaatgaaaaccaaaaataaattaagggaccaaatgatgtattaagcca 23177667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 167
Target Start/End: Complemental strand, 23589088 - 23588924
Alignment:
Q  4 ctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattt 103  Q
    ||||||| | |||||| ||||||  ||| ||||||||| |||||||||||||| |||| ||||||||||||||||  || |||||||  || | ||| ||    
T  23589088 ctttaaatatggttcatcttagattttttatgttaaaaactaacggagaggaccaaaatggtaaacggcagaagatttatgggaccaaattgagacactt 23588989  T
Q  104 tatagtta-agagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcca 167  Q
    ||||||||  | || |||| |||||| ||||||| |||||||  |||||||||| ||||||||||    
T  23588988 tatagttagggggaccaaaatgaaaaccaaaaataaattaagggaccaaatgatgtattaagcca 23588924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 26205160 - 26205055
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaag 113  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||   |  ||||| |||||||||||||||||| ||| | || |||| ||||||||    
T  26205160 ggttcaccttagacatttgatgttaaaaactaacggagaggaccaaacgaggtaacggaagaagacataagggaccaatttgagacgttttttagttaag 26205061  T
Q  114 agatca 119  Q
     |||||    
T  26205060 ggatca 26205055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 14714652 - 14714540
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaaca 100  Q
    |||||||||| | |||||||||||||||||||||||||||| |||||||||||||| ||||  |  ||||| ||||||||||||  |||| ||| ||||     
T  14714652 cacctttaaatatggttcaccttagacatttgatgttaaaaactaacggagaggaccaaaagtggtaacggaagaagacataagcaaccaatttgaaacg 14714553  T
Q  101 ttttatagttaag 113  Q
    ||||  |||||||    
T  14714552 tttttaagttaag 14714540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 7983651 - 7983729
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagac 79  Q
    |||||||||||| ||||||||||||||||||||||||||||  | ||| | ||||||||||| |||||||| |||||||    
T  7983651 cacctttaaacatggttcaccttagacatttgatgttaaaaattgacgaaaaggactaaaacagtaaacggtagaagac 7983729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 29424568 - 29424733
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaaca 100  Q
    |||||||||||| |||||| ||||||||||||||||||  | ||||| |||||||| |||||  |||||||||||| |   |||||||||  || |||||    
T  29424568 cacctttaaacatggttcatcttagacatttgatgttagtaactaacagagaggaccaaaacaataaacggcagaatattcaagggaccaaattgaaaca 29424667  T
Q  101 ttttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
     |||||||||| | || ||| || |||| ||||||| | |||||  ||||||  || |||||||||    
T  29424668 ctttatagttaggggaccaatgtaaaaaccaaaaataagttaagggaccaaacaatgtattaagcc 29424733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 37869012 - 37869161
Alignment:
Q  17 tcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagaga 116  Q
    ||||||||||||||| | ||||||| | |||||||| ||| |||| |||||||| |||||||| || | ||| |  || | ||| |||||||||||| ||    
T  37869012 tcaccttagacatttaaggttaaaaacaaacggagaagaccaaaaaggtaaacgacagaagacttatgagactaaattgagacactttatagttaaggga 37869111  T
Q  117 tcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
     |||| |||||||||||||| | |||||  ||||||  ||||||||||||    
T  37869112 ccaaattgaaaatcaaaaataagttaagggaccaaacaatatattaagcc 37869161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 14 - 166
Target Start/End: Original strand, 12959674 - 12959826
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaag 113  Q
    |||||||||||||||||| | ||||||  | |||||||||||  |||| ||||||||||||||||  ||  |||| |  || | ||| ||||| ||||||    
T  12959674 ggttcaccttagacatttaaggttaaagacaaacggagaggatcaaaaaggtaaacggcagaagatttatcggactaaattgagacactttattgttaag 12959773  T
Q  114 agatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
     || |||| | |||||||||||| | ||||| ||||||| |||||||||||||    
T  12959774 ggaccaaattaaaaatcaaaaataagttaaggaaccaaacgatatattaagcc 12959826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 7037111 - 7036961
Alignment:
Q  16 ttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagag 115  Q
    ||||||||||| |||| | |||||||   |||||| | ||| |||| ||||||||||||||||| || |||||||  || ||||| |||||||||||| |    
T  7037111 ttcaccttagatatttaaggttaaaaataaacggaaatgaccaaaatggtaaacggcagaagacttatgggaccaaattgaaacactttatagttaaggg 7037012  T
Q  116 atcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
    |  |||||||||  ||||||| | ||||   |||||||||| |||||||||    
T  7037011 actaaagtgaaatccaaaaataagttaaaggaccaaatgatgtattaagcc 7036961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 14509356 - 14509245
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaag 113  Q
    |||| ||||||||||||| | |||||||  ||||||||||||| ||||  ||||||| |||||||  || ||||||   |||||||| ||||||||||||    
T  14509356 ggtttaccttagacatttaaggttaaaaattaacggagaggaccaaaatagtaaacgacagaagatttatgggaccgaattaaaacactttatagttaag 14509257  T
Q  114 agatcaaagtga 125  Q
     || ||||||||    
T  14509256 ggaccaaagtga 14509245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 4512253 - 4512156
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagtta 111  Q
    ||||||||||||| |||||||||||||| |||| ||||||||| ||||  |  ||||| |||||||| ||||||||| ||| | || |||| ||||||    
T  4512253 ggttcaccttagatatttgatgttaaaaactaatggagaggaccaaaagaggtaacggaagaagacacaagggaccaatttgagacgttttttagtta 4512156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 21010454 - 21010514
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaa 61  Q
    |||||||||| ||||||||| |||||||||||||||||| | ||||| |||||||| ||||    
T  21010454 cacctttaaatacggttcacattagacatttgatgttaacaactaacagagaggaccaaaa 21010514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 35799657 - 35799597
Alignment:
Q  16 ttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaa 76  Q
    |||||||||||||||| | |||||||||||||||||||||| |||  ||||||||| ||||    
T  35799657 ttcaccttagacatttaaggttaaaagctaacggagaggaccaaagaggtaaacggaagaa 35799597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 32614535 - 32614476
Alignment:
Q  11 cacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacg 70  Q
    ||||||||||||||||||| | | ||||||| | ||||||||||||||||| ||||||||    
T  32614535 cacggttcaccttagacatataaggttaaaaacaaacggagaggactaaaatggtaaacg 32614476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 12853046 - 12852936
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaaca 100  Q
    |||||||||| | |||||||||||||  ||||||||||||| |||||||||| ||| ||||  |||||||  ||||||  || |||||||  || | |||    
T  12853046 cacctttaaatatggttcaccttagatttttgatgttaaaatctaacggagatgaccaaaatagtaaacgatagaagatttatgggaccaaattgagaca 12852947  T
Q  101 ttttatagtta 111  Q
     ||||||||||    
T  12852946 ctttatagtta 12852936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 28109838 - 28109988
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaag 113  Q
    |||||||||||||||||| | |||||||  ||||||||||||| |||| |||||||  ||||| |  || |||||||  || | | | ||||| |||| |    
T  28109838 ggttcaccttagacatttaaggttaaaaaataacggagaggaccaaaatggtaaactacagaaaagttatgggaccaaattgagatactttatcgttatg 28109937  T
Q  114 agatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaag 164  Q
    ||| |||| ||||||  |||||| | |||||  ||||||| ||||||||||    
T  28109938 agaccaaattgaaaacgaaaaataagttaagggaccaaatcatatattaag 28109988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 2305658 - 2305565
Alignment:
Q  43 ctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaat 136  Q
    |||||||||||||| ||||  |  ||||||||||||||||||||||||  || | ||| |||||||||| | ||||||| |||||  |||||||    
T  2305658 ctaacggagaggaccaaaagaggtaacggcagaagacataagggaccaaattgagacactttatagttaggggatcaaaatgaaatccaaaaat 2305565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 10368442 - 10368503
Alignment:
Q  102 tttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaa 163  Q
    |||||||||| | ||||||| |||||||||||||| |||||||  |||||||||| ||||||    
T  10368442 tttatagttaggggatcaaattgaaaatcaaaaataaattaagggaccaaatgatgtattaa 10368503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 41296425 - 41296522
Alignment:
Q  16 ttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaag 113  Q
    ||||| ||||||||||| |||||||| |||||||||||||| ||||  |  |||| || || |||||||||||||  || |||| |||| ||||||||    
T  41296425 ttcactttagacatttggtgttaaaaactaacggagaggaccaaaagagataacgacaaaaaacataagggaccaaattgaaacgttttttagttaag 41296522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 3665318 - 3665274
Alignment:
Q  67 aacggcagaagacataagggaccagtttaaaacattttatagtta 111  Q
    ||||||||||||||||||||||||  || ||||||||||||||||    
T  3665318 aacggcagaagacataagggaccaaattgaaacattttatagtta 3665274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 8537152 - 8537061
Alignment:
Q  21 cttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaa 112  Q
    ||||||||||| | ||||||| |||||||||| ||| ||||  |  |||| ||||| ||||||||||||| ||| | ||||||| |||||||    
T  8537152 cttagacatttaaggttaaaaactaacggagatgaccaaaatagataacgacagaatacataagggaccaatttgagacattttttagttaa 8537061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 165
Target Start/End: Original strand, 23178875 - 23179002
Alignment:
Q  38 aaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaatt 137  Q
    |||| |||||||||| ||| ||||   |||||| | |||||  || ||||||| ||||||||| |||||||||| | || |||||||||||  ||||||     
T  23178875 aaaaactaacggagatgaccaaaataataaacgactgaagatttatgggaccaatttaaaacagtttatagttaggggaccaaagtgaaaactaaaaata 23178974  T
Q  138 aattaagtaaccaaatgatatattaagc 165  Q
    | |||||  ||||||||||  |||||||    
T  23178975 agttaagggaccaaatgatggattaagc 23179002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 165
Target Start/End: Original strand, 23590132 - 23590259
Alignment:
Q  38 aaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaatt 137  Q
    |||| |||||||||| ||| ||||   |||||| | |||||  || ||||||| ||||||||| |||||||||| | || |||||||||||  ||||||     
T  23590132 aaaaactaacggagatgaccaaaataataaacgactgaagatttatgggaccaatttaaaacagtttatagttaggggaccaaagtgaaaactaaaaata 23590231  T
Q  138 aattaagtaaccaaatgatatattaagc 165  Q
    | |||||  ||||||||||  |||||||    
T  23590232 agttaagggaccaaatgatggattaagc 23590259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 35801044 - 35801129
Alignment:
Q  44 taacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaat 129  Q
    ||||||||||||| |||  |||||| |||||||||  || |||||||  || ||||| |||||||||||| ||| ||| |||||||    
T  35801044 taacggagaggaccaaagtggtaaatggcagaagagttaggggaccaaattgaaacactttatagttaagggatgaaaatgaaaat 35801129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 45047502 - 45047453
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacgga 50  Q
    |||||||||| | ||||||||||||||||||||| ||||||  |||||||    
T  45047502 cacctttaaatatggttcaccttagacatttgatattaaaaattaacgga 45047453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 4829528 - 4829460
Alignment:
Q  98 acattttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
    |||||||||||||||| ||  ||||||||||  |||||| | ||||| || |||||||| |||||||||    
T  4829528 acattttatagttaagggactaaagtgaaaacgaaaaataagttaaggaatcaaatgatgtattaagcc 4829460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 12958475 - 12958412
Alignment:
Q  102 tttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
    |||||||||| | ||||||| | |||| ||||||| | ||||| |||||||||||||||||||||    
T  12958475 tttatagttaggggatcaaattaaaaaccaaaaataagttaag-aaccaaatgatatattaagcc 12958412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 162
Target Start/End: Complemental strand, 40058165 - 40058017
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaag 113  Q
    |||||||||||||||||| |  |||||| |||||||||| ||| |||| ||||||||||||||||  || | ||||| ||| ||||| || |||||||||    
T  40058165 ggttcaccttagacatttaagattaaaaactaacggagatgaccaaaatggtaaacggcagaagagttatgagaccaatttgaaacacttaatagttaag 40058066  T
Q  114 agatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatatta 162  Q
     ||||||| |||||| ||||||| | |||||  | |||| |||||||||    
T  40058065 ggatcaaaatgaaaaccaaaaataagttaagagatcaaacgatatatta 40058017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 41905268 - 41905170
Alignment:
Q  68 acggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
    |||| |||||||||||||||||||||||| |||||||||||||| | || |||| |||||| ||||||| | |||||  |||||||||| |||||||||    
T  41905268 acggtagaagacataagggaccagtttaagacattttatagttaggggaccaaaatgaaaaccaaaaataagttaagggaccaaatgatgtattaagcc 41905170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 38 - 166
Target Start/End: Original strand, 5384339 - 5384467
Alignment:
Q  38 aaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaatt 137  Q
    |||| |||||||||||||| ||||  ||||||||  |||||  || |||||||  || | ||| |||||||||| | ||||||| ||||||||||||||     
T  5384339 aaaaactaacggagaggaccaaaatagtaaacggacgaagatttatgggaccaaattgagacactttatagttaggggatcaaattgaaaatcaaaaata 5384438  T
Q  138 aattaagtaaccaaatgatatattaagcc 166  Q
    ||||||| ||||||||||| |||||||||    
T  5384439 aattaaggaaccaaatgatgtattaagcc 5384467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 14 - 166
Target Start/End: Original strand, 19525257 - 19525409
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaag 113  Q
    |||||||| |||| |||| | ||||||| | |||||||||||| |||| ||||||||||||||||| || | |||||  |  | ||| |||||||||| |    
T  19525257 ggttcaccatagaaatttaaggttaaaaacaaacggagaggaccaaaatggtaaacggcagaagacttatgtgaccaaatggagacactttatagttagg 19525356  T
Q  114 agatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
     || |||| |||||| ||||||| | |||||  |||||||||| |||||||||    
T  19525357 ggaccaaattgaaaaccaaaaataagttaagggaccaaatgatgtattaagcc 19525409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 163
Target Start/End: Original strand, 10085843 - 10085963
Alignment:
Q  43 ctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaatta 142  Q
    |||||||||||||| ||||  |||||  ||||||||  || |||||||  || ||||| |||| |||||||||| |||||||||| |||||||| | |||    
T  10085843 ctaacggagaggaccaaaatagtaaatagcagaagatttatgggaccaaattgaaacactttaaagttaagagaccaaagtgaaattcaaaaataagtta 10085942  T
Q  143 agtaaccaaatgatatattaa 163  Q
    ||  |||||||||| ||||||    
T  10085943 agggaccaaatgatgtattaa 10085963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 166
Target Start/End: Complemental strand, 18678079 - 18677971
Alignment:
Q  58 aaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgata 157  Q
    ||||||||||||| |||||||  || |||||||  || | ||| |||||||||| | |||||||||||||| ||||||| | |||||  ||||||||||     
T  18678079 aaaacggtaaacgacagaagatttatgggaccaaattgagacactttatagttaggggatcaaagtgaaaaccaaaaataagttaagggaccaaatgatg 18677980  T
Q  158 tattaagcc 166  Q
    |||||||||    
T  18677979 tattaagcc 18677971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 18693858 - 18693723
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaaca 100  Q
    |||||||| | | |||||||||||||  ||||||||||||| ||||| |||||||| ||||  |  |||| |||||||  || |||||||| || | |||    
T  18693858 cacctttatatatggttcaccttagagttttgatgttaaaaactaacagagaggaccaaaagaggtaacgacagaagatttatgggaccagattgagaca 18693759  T
Q  101 ttttatagttaagagatcaaagtgaaaatcaaaaat 136  Q
    ||||||||||||| || |||| | ||| ||||||||    
T  18693758 ttttatagttaagggaccaaaataaaattcaaaaat 18693723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 164
Target Start/End: Complemental strand, 1273212 - 1273086
Alignment:
Q  38 aaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaatt 137  Q
    |||| ||||||||| |||| ||||  |||||| ||||||||  || |||||||  || | |||||||||||||||  || |||| |||||| |||||||     
T  1273212 aaaaactaacggaggggaccaaaattgtaaactgcagaagatttatgggaccaaattgagacattttatagttaaaggaccaaaatgaaaaccaaaaata 1273113  T
Q  138 aattaagtaaccaaatgatatattaag 164  Q
    |||||||  |||||||||| |||||||    
T  1273112 aattaagggaccaaatgatgtattaag 1273086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 42510257 - 42510147
Alignment:
Q  18 caccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagat 117  Q
    |||| ||||||||||| ||||||| ||||||||||| || ||||  |||||||||||||||  || |||||||  || | ||| |||||||||||| ||     
T  42510257 caccatagacatttgaggttaaaaactaacggagagaaccaaaatagtaaacggcagaagatttatgggaccaaattgagacactttatagttaagggac 42510158  T
Q  118 caaagtgaaaa 128  Q
    |||| ||||||    
T  42510157 caaactgaaaa 42510147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 165
Target Start/End: Original strand, 40059327 - 40059448
Alignment:
Q  44 taacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaattaa 143  Q
    |||||||||  || |||| | ||||||||||||||  ||  |||||| ||||||||| || ||||||| | ||||||| |||||| ||||||| | ||||    
T  40059327 taacggagatcaccaaaatgataaacggcagaagagttattggaccaatttaaaacacttaatagttaggggatcaaaatgaaaaccaaaaataagttaa 40059426  T
Q  144 gtaaccaaatgatatattaagc 165  Q
    |  ||||||| |||||||||||    
T  40059427 gggaccaaattatatattaagc 40059448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 21387797 - 21387662
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaaca 100  Q
    |||||||||| | | |||||||||||  ||||||||||||| ||||| || ||||| ||||  |  ||||||||||||  || |||||||  || | |||    
T  21387797 cacctttaaatatgtttcaccttagagttttgatgttaaaaactaacagacaggaccaaaagaggtaacggcagaagatttatgggaccaaattgagaca 21387698  T
Q  101 ttttatagttaagagatcaaagtgaaaatcaaaaat 136  Q
    ||||||||||| | || |||| ||||| ||||||||    
T  21387697 ttttatagttaggggaccaaaatgaaattcaaaaat 21387662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 1663304 - 1663182
Alignment:
Q  44 taacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaattaa 143  Q
    ||||||||| ||| ||||  |||||||||||||||  ||  ||||||  |||| ||| |||||||||||  |||||||||||||  ||||||| | ||||    
T  1663304 taacggagaagaccaaaatagtaaacggcagaagatttataggaccaaattaagacactttatagttaatggatcaaagtgaaatccaaaaataagttaa 1663205  T
Q  144 gtaaccaaatgatatattaagcc 166  Q
    |  || ||||||| |||||||||    
T  1663204 gggactaaatgatgtattaagcc 1663182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 5383087 - 5382937
Alignment:
Q  16 ttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagag 115  Q
    |||||||||||||||| | ||||||| |||||||||||||  ||||  ||||||| |  ||||  || |||||||  || | ||| |||||| ||| |||    
T  5383087 ttcaccttagacatttaaggttaaaaactaacggagaggatcaaaatagtaaacgaccaaagatttatgggaccaaattgagacactttataattaggag 5382988  T
Q  116 atcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
    | ||||  ||||| ||||||| | |||||  |||||||||| |||||||||    
T  5382987 accaaatagaaaaccaaaaataagttaagggaccaaatgatgtattaagcc 5382937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 7426801 - 7426723
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagac 79  Q
    |||||||||| | | ||||||||||||||||||||||||||  | ||||| |||| |||||| ||||| ||||| ||||    
T  7426801 cacctttaaatatgattcaccttagacatttgatgttaaaaattgacggaaaggaataaaacagtaaatggcagtagac 7426723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 167
Target Start/End: Complemental strand, 19524042 - 19523977
Alignment:
Q  102 tttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcca 167  Q
    |||||||||||| || |||| |||||| ||||||| | |||||  |||||||||||||||||||||    
T  19524042 tttatagttaagggaccaaattgaaaaccaaaaataagttaagggaccaaatgatatattaagcca 19523977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 12933867 - 12933748
Alignment:
Q  45 aacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaattaag 144  Q
    |||||| |||||  ||| ||||||||||||||||| || | || ||  || | ||| |||||||||| | ||||||| |||||| ||||||| | |||||    
T  12933867 aacggaaaggaccgaaatggtaaacggcagaagacttatgagatcaaattgagacactttatagttaggggatcaaaatgaaaaccaaaaataagttaag 12933768  T
Q  145 taaccaaatgatatattaag 164  Q
      || |||||||||||||||    
T  12933767 ggactaaatgatatattaag 12933748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 12947971 - 12947909
Alignment:
Q  102 tttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaag 164  Q
    |||||||||| | ||||||| |||||||||||||| | |||||  || |||||||||||||||    
T  12947971 tttatagttaggggatcaaaatgaaaatcaaaaataagttaagggactaaatgatatattaag 12947909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 166
Target Start/End: Complemental strand, 6629807 - 6629726
Alignment:
Q  85 ggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
    |||||||||| | ||| |||||||||| | || ||||||||||| || |||| | |||||  |||||||||| |||||||||    
T  6629807 ggaccagtttgagacactttatagttaggggaccaaagtgaaaaccacaaataagttaagggaccaaatgatgtattaagcc 6629726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 15510285 - 15510345
Alignment:
Q  67 aacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaa 127  Q
    ||||||||||||||||||||||||  || | ||| |||||||||| | ||||||| |||||    
T  15510285 aacggcagaagacataagggaccaaattgagacactttatagttaggggatcaaaatgaaa 15510345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 41068 - 40990
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagac 79  Q
    |||||||||| | |||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||||| ||||||||    
T  41068 cacctttaaatatggttcaccttagacatttgatgttaaaaactaacagagagaactaaaacagtaaacgacagaagac 40990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 47215 - 47066
Alignment:
Q  16 ttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagag 115  Q
    |||||||||||||||| | |||||||  ||||||||||||| ||||  |||||||| ||||||  || |||||||  || | ||| |||| ||||||| |    
T  47215 ttcaccttagacatttaaagttaaaaattaacggagaggaccaaaatagtaaacggaagaagatttatgggaccaaattgagacaatttaaagttaaggg 47116  T
Q  116 atcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagc 165  Q
    |||||| ||||| |||||||| | |||||  |||||||||| ||||||||    
T  47115 atcaaaatgaaattcaaaaataagttaagggaccaaatgatgtattaagc 47066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1974 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold1974
Description:

Target: scaffold1974; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 4 - 166
Target Start/End: Original strand, 587 - 749
Alignment:
Q  4 ctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattt 103  Q
    ||||||| | |||||||||||||  ||| ||||||||| |||||||||| ||| |||| ||||||||||||||||  || ||||| |  || | ||| ||    
T  587 ctttaaatatggttcaccttagattttttatgttaaaaactaacggagatgaccaaaatggtaaacggcagaagatttatgggactaaattgagacactt 686  T
Q  104 tatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
    |||||||| | || |||||||| ||  |||||| | |||||  |||||||||| |||||||||    
T  687 tatagttaggggaccaaagtgataacaaaaaataagttaagggaccaaatgatgtattaagcc 749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1878 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold1878
Description:

Target: scaffold1878; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 4 - 166
Target Start/End: Complemental strand, 687 - 525
Alignment:
Q  4 ctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattt 103  Q
    ||||||| | |||||||||||||  ||| ||||||||| |||||||||| ||| |||| ||||||||||||||||  || ||||| |  || | ||| ||    
T  687 ctttaaatatggttcaccttagattttttatgttaaaaactaacggagatgaccaaaatggtaaacggcagaagatttatgggactaaattgagacactt 588  T
Q  104 tatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
    |||||||| | || |||||||| ||  |||||| | |||||  |||||||||| |||||||||    
T  587 tatagttaggggaccaaagtgataacaaaaaataagttaagggaccaaatgatgtattaagcc 525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 4 - 166
Target Start/End: Original strand, 9437 - 9599
Alignment:
Q  4 ctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattt 103  Q
    ||||||| | |||||||||||||  ||| ||||||||| |||||||||| ||| |||| ||||||||||||||||  || ||||| |  || | ||| ||    
T  9437 ctttaaatatggttcaccttagattttttatgttaaaaactaacggagatgaccaaaatggtaaacggcagaagatttatgggactaaattgagacactt 9536  T
Q  104 tatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
    |||||||| | || |||||||| ||  |||||| | |||||  |||||||||| |||||||||    
T  9537 tatagttaggggaccaaagtgataacaaaaaataagttaagggaccaaatgatgtattaagcc 9599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 164
Target Start/End: Original strand, 145868 - 145988
Alignment:
Q  44 taacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaattaa 143  Q
    ||||||||| ||| ||||  |||||||||| ||||  ||  ||||||  |||| |||||||||||||| | ||| ||| |||||| ||||||| ||||||    
T  145868 taacggagatgaccaaaatagtaaacggcataagatttattggaccaaattaagacattttatagttaggggattaaattgaaaaccaaaaataaattaa 145967  T
Q  144 gtaaccaaatgatatattaag 164  Q
    | ||||||||||| |||||||    
T  145968 gaaaccaaatgatgtattaag 145988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 136
Target Start/End: Original strand, 13163 - 13295
Alignment:
Q  4 ctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattt 103  Q
    ||||||| | |||||||||||||||||||||||||||| |||| ||| ||||| ||||  |  ||||| ||||||  || ||||| |  || | ||||||    
T  13163 ctttaaatatggttcaccttagacatttgatgttaaaacctaatggataggaccaaaagaggtaacggaagaagagttatgggacgaaattgagacattt 13262  T
Q  104 tatagttaagagatcaaagtgaaaatcaaaaat 136  Q
    |||||||| | || |||| |||||| |||||||    
T  13263 tatagttaggggaccaaactgaaaaccaaaaat 13295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 16092 - 16033
Alignment:
Q  14 ggttcaccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggca 73  Q
    |||||| ||||||||||| | ||||||| |||||||||||||||||||  ||||||||||    
T  16092 ggttcatcttagacatttaaggttaaaaactaacggagaggactaaaatagtaaacggca 16033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 77135 - 77297
Alignment:
Q  1 cacctttaaacacggttcaccttagaca--tttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaa 98  Q
    |||||||||| | |||||||||||||||  |||||||| |||   ||||||||| ||| ||||| |||||||| |||| |  || |||||||  || |||    
T  77135 cacctttaaatatggttcaccttagacacatttgatgtcaaacattaacggagaagaccaaaacagtaaacggtagaatatttatgggaccaaattgaaa 77234  T
Q  99 cattttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatatt 161  Q
    |  |||||||||| |||| |||||||||||  |||||| | |||||  || ||||||| ||||    
T  77235 cgctttatagttaggagaccaaagtgaaaacaaaaaataagttaagagactaaatgatgtatt 77297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 39857 - 39917
Alignment:
Q  1 cacctttaaacacggttcaccttagacatttgatgttaaaagctaacggagaggactaaaa 61  Q
    |||||||||| | | |||||||||||| ||||||||||||| ||||| |||||||| ||||    
T  39857 cacctttaaatatgattcaccttagacttttgatgttaaaaactaacagagaggaccaaaa 39917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 136
Target Start/End: Complemental strand, 22190 - 22153
Alignment:
Q  98 acattttatagttaagagatcaaagtgaaaatcaaaaat 136  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  22190 acattttatagtta-gagatcaaagtgaaaatcaaaaat 22153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 166
Target Start/End: Original strand, 24844 - 24936
Alignment:
Q  74 gaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaattaattaagtaaccaaatgatatattaagcc 166  Q
    |||||||||||||||||  || ||||| |||||| ||| | || |||| |||||| ||||||| |||||||  |||||| ||| |||||||||    
T  24844 gaagacataagggaccaaattgaaacactttataattaggggaccaaactgaaaaccaaaaataaattaagggaccaaacgatgtattaagcc 24936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 166
Target Start/End: Original strand, 72979 - 73107
Alignment:
Q  38 aaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatcaaagtgaaaatcaaaaatt 137  Q
    |||| |||||||||||||| ||||  |  |||| ||||||||||||| ||||| |||   ||| ||||| |||| | || ||||||||||| |||||||     
T  72979 aaaaactaacggagaggaccaaaagaggtaacgacagaagacataagagaccaatttgtgacactttattgttaggggaccaaagtgaaaaccaaaaata 73078  T
Q  138 aattaagtaaccaaatgatatattaagcc 166  Q
    | |||||  || ||||||| |||||||||    
T  73079 agttaagggactaaatgatgtattaagcc 73107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 164
Target Start/End: Original strand, 56675 - 56819
Alignment:
Q  20 ccttagacatttgatgttaaaagctaacggagaggactaaaacggtaaacggcagaagacataagggaccagtttaaaacattttatagttaagagatca 119  Q
    ||||||| |||||||||||||| ||||  |||||||   |||| |||||||||||||||  ||  ||||||  || | ||| |||||| ||| | || ||    
T  56675 ccttagatatttgatgttaaaaactaatagagaggatctaaacagtaaacggcagaagatttataggaccaaattgagacactttataattaggggacca 56774  T
Q  120 aagtgaaaatcaaaaattaa-ttaagtaaccaaatgatatattaag 164  Q
    ||||| |||||||||| ||| |||||  |||||||||| |||||||    
T  56775 aagtg-aaatcaaaaaataagttaagggaccaaatgatttattaag 56819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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