View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_high_13 (Length: 478)
Name: NF6392_high_13
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_high_13 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 18 - 468
Target Start/End: Original strand, 25555863 - 25556313
Alignment:
| Q |
18 |
gaaatatgaagaggaaaaagttaacgagacattaatctaaacaagcttcgctatttgattttctaaatttatgataacaggatatcaatgtcaatatttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25555863 |
gaaatatgaagaggaaaaagttaacgagacattaatctaaacaagcttcgctatttgattttctaaatttatgataacaggatatcaatgtcaatatttt |
25555962 |
T |
|
| Q |
118 |
tctcttaacattccaatgttctctaacaaactttatcagtaagtataaatgtttattataaggtctgagatattcttagcatatggttattgactctcaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25555963 |
tctcttaacattccaatgttctctaacaaactttatcagtaagtataaatgtttattataaggtctgagatattcttagcatatggttattgactctcaa |
25556062 |
T |
|
| Q |
218 |
gttcatgtagtattgtacttaaaatgtttattactacatataagaagttgctttctgttacaagcaggttttgtttattcaaatactcaatgtcgtataa |
317 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25556063 |
gttcatgtaggattgtacttaaaatgtttattactacatataagaagttgctttctgttacaagcaggttttgtttattcaaatactcaatgtcgtataa |
25556162 |
T |
|
| Q |
318 |
ctatccgagtgattaactcgtttttgcttgatgtggtcgattaactaccaccaatactgatcatattgggacttgttttcattttctcttctgctttcga |
417 |
Q |
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|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25556163 |
ctatcagagtgattaactcgtttttgcttgatgtggtcgattaactaccaccaatactgatcatattgggacttgttttcattttctcttctgctttcga |
25556262 |
T |
|
| Q |
418 |
gggacatatggtgatcatcccggggatttcaaacctgatcggtaccctttg |
468 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25556263 |
gggacatatggtgatcatcccggggatttcaaacctgatcggtaccctttg |
25556313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 173 - 464
Target Start/End: Original strand, 14367249 - 14367546
Alignment:
| Q |
173 |
ttataaggtctgagatattcttagcatatggttattgactctcaagttcatgtagtattgtacttaaa-atgtttattactacatataagaagttgcttt |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| | |||||||||||||||| |
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|
| T |
14367249 |
ttataaggtctgagatattcttagcatatggttattgactctcaagttcatgtagtattgtgcttaaagatgtttattacaatatataagaagttgcttc |
14367348 |
T |
|
| Q |
272 |
ctgttacaagcaggttt------tgtttattcaaatactcaatgtcgtataactatccgagtgattaactcgtttttgcttgatgtggtcgattaactac |
365 |
Q |
| |
|
||||||||| || ||| ||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||| ||||| ||||| |
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|
| T |
14367349 |
ctgttacaacaagttttgttttttgtttattcaaatactcaa-gtcgtataactatctgagtgattaactcttttttgcttgatgtggacgattgactac |
14367447 |
T |
|
| Q |
366 |
caccaatactgatcatattgggacttgttttcattttctcttctgctttcgagggacatatggtgatcatcccggggatttcaaacctgatcggtaccc |
464 |
Q |
| |
|
||||||||||||||||||||| || | |||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||| ||| | |||||| |
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|
| T |
14367448 |
caccaatactgatcatattggtaccttgtttcattttcccttcttcttttgagggacatatggtgatcatcccggggatttcaaacgtgagcagtaccc |
14367546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 170 - 464
Target Start/End: Complemental strand, 8855912 - 8855613
Alignment:
| Q |
170 |
ttattataaggtctgagatattcttagcatatggttattgactctcaagttcatgtagtattgtacttaaaatgtttattactacatataagaagttgct |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
8855912 |
ttattataaggtctgagatattcttagcatatggttattgactctcaagttcatgtagtattgtacttaaaatgtttattactatatataagaagttgct |
8855813 |
T |
|
| Q |
270 |
ttctgttacaagcaggttttgttt-------attcaaatactcaatgtcgtataactatccgagtgattaactcgtttttgcttgatgtggtcgattaac |
362 |
Q |
| |
|
|||||||||| ||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
8855812 |
ttctgttaca-gcaagttttgttttttgtttattcaaatactcaa-gtcgtataactatccgagtgattaactcttttttgcttgatgtggtcgattaac |
8855715 |
T |
|
| Q |
363 |
taccaccaatactgatcatattgggacttgttttcattttctcttctgctttcgagggacatatggtgatcatcccggggatttcaaacctgatcggtac |
462 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8855714 |
taccaccaatactgatcatattggtacctgttttcattttctcttctgcttttgagggacatatggtgatcatcccggggatttcaaacctgatcagtac |
8855615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 20010966 - 20010815
Alignment:
| Q |
18 |
gaaatatgaagaggaaaaagttaacgagacattaatctaaacaagcttcgctatttgattttctaaatttatgataacaggatatcaatgtcaatatttt |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
20010966 |
gaaatatgaagatgaaaaagttaacgagacattaatctaaacaagcttcgctatttgattttctaaatttatgataacaggatatcagtgtcaatatttt |
20010867 |
T |
|
| Q |
118 |
tctcttaacattccaatgttctctaacaaactttatcagtaagtataaatgt |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20010866 |
tctcttaacattccaatgttctctaacaaactttatcagtaagtataaatgt |
20010815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 162; Significance: 3e-86; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 173 - 430
Target Start/End: Complemental strand, 19576296 - 19576033
Alignment:
| Q |
173 |
ttataaggtctgagatattcttagcatatggttattgactctcaagttcatgtagtattgtacttaaa-atgtttattactacatataagaagttgcttt |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
19576296 |
ttataaggtctgagatattcttagcatatggttattgactctcaagttcatgtagtattgtgcttaaagatgtttattactatatataagaagttgcttc |
19576197 |
T |
|
| Q |
272 |
ctgttacaagcaggttt------tgtttattcaaatactcaatgtcgtataactatccgagtgattaactcgtttttgcttgatgtggtcgattaactac |
365 |
Q |
| |
|
||||||||| || ||| ||||||||||||||||||| |||||||||||||| || |||||||||| |||||||||||||||||||||| ||||| |
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|
| T |
19576196 |
ctgttacaacaagttttgttttttgtttattcaaatactcaa-gtcgtataactatctgaatgattaactcttttttgcttgatgtggtcgattgactac |
19576098 |
T |
|
| Q |
366 |
caccaatactgatcatattgggacttgttttcattttctcttctgctttcgagggacatatggtg |
430 |
Q |
| |
|
||||||||||||||||||||| || | |||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
19576097 |
caccaatactgatcatattggtaccttgtttcattttctcttcttcttttgagggacatatggtg |
19576033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 22621079 - 22620928
Alignment:
| Q |
18 |
gaaatatgaagaggaaaaagttaacgagacattaatctaaacaagcttcgctatttgattttctaaatttatgataacaggatatcaatgtcaatatttt |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
22621079 |
gaaatatgaagatgaaaaagttaacgagacattaatctaaacaagcttcgctatttgattttctaaatttatgataacaggatatcagtgtcaatatttt |
22620980 |
T |
|
| Q |
118 |
tctcttaacattccaatgttctctaacaaactttatcagtaagtataaatgt |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22620979 |
tctcttaacattccaatgttctctaacaaactttatcagtaagtataaatgt |
22620928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 19007624 - 19007473
Alignment:
| Q |
18 |
gaaatatgaagaggaaaaagttaacgagacattaatctaaacaagcttcgctatttgattttctaaatttatgataacaggatatcaatgtcaatatttt |
117 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
19007624 |
gaaatatgaagatgaaaaagttaatgagacattaatctaaacaagcttcgctatttgattttctaaatttgtgataacaggatttcaatgtcaatatttt |
19007525 |
T |
|
| Q |
118 |
tctcttaacattccaatgttctctaacaaactttatcagtaagtataaatgt |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19007524 |
tctcttaacattccaatgttctctaacaaactttatcagtaaatataaatgt |
19007473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 170 - 361
Target Start/End: Original strand, 26383359 - 26383562
Alignment:
| Q |
170 |
ttattataaggtctgagatattcttagcatatggttattgactctcaagttcatgtagtattgtacttaaaatgtttattactac-------atataaga |
262 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||| |||||||| |
|
|
| T |
26383359 |
ttattatacggtctgagatattcttagcatatggttattgagtctcaagttcatgtagtattgcacttgaaatgtttattactactatttatatataaga |
26383458 |
T |
|
| Q |
263 |
agttgctttctgttacaagcagg-------ttttgtttattcaaatactcaatgtcgtataactatccgagtgattaactcgtttttgcttgatgtggtc |
355 |
Q |
| |
|
|||||||| ||||||| |||| | |||||||||||||||||||||| || |||||||||||| ||| |||||||| |||||||||||||||||| |
|
|
| T |
26383459 |
agttgcttcctgttac-agcaagttttgttttttgtttattcaaatactcaa-gttgtataactatccaagtcattaactcttttttgcttgatgtggtc |
26383556 |
T |
|
| Q |
356 |
gattaa |
361 |
Q |
| |
|
|||||| |
|
|
| T |
26383557 |
gattaa |
26383562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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