View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_high_2 (Length: 745)
Name: NF6392_high_2
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 476; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 222 - 730
Target Start/End: Original strand, 7151256 - 7151766
Alignment:
| Q |
222 |
aaatataactatttgtttggcattaagcacttgtttttgtaacaatacatatatagctttgcattctaatatatgcaataaatccttcatttatttctag |
321 |
Q |
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| T |
7151256 |
aaatataactatttgtttggcattaagcacttgtttttgtaacaatacatatatagctttgcattctaagatatgcaataaatccttcatttatttctag |
7151355 |
T |
|
| Q |
322 |
cttcctataatctaacaaaatgaattatactttatcagcacaaaaactcatgactagatttaattttggaaccttaataatatatatttgattaaagatt |
421 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7151356 |
cttcctataatctaacaaaatgaattatactttatcagcacaaaaactcatgactagatttaattttggaaccttaataatatgtatttgattaaagatt |
7151455 |
T |
|
| Q |
422 |
gtaatatttgcttccaaaagtcgattggaccaaccaataatgtatatagtttctcttagggattgaagactcttaggtgtcgaagaaggcaataaatgga |
521 |
Q |
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| T |
7151456 |
gtaatatttgcttctaaaagtcgattggatcaaccaataatgtatatagtttctcttagggattgaagactcttaggtgtcgaagaaggcaataaatgga |
7151555 |
T |
|
| Q |
522 |
ttaaaagttctttgtattgtgttcttttagacatgcaatactcttgttaggtcttgattttattctgttagacattttcaaatagtataatattcttgta |
621 |
Q |
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| T |
7151556 |
ttaaaagttctttgtattgtgttcttttagacatgcaatactcttgttaggtcttgattttattctgttagacattttcaaatagtataatattcttgta |
7151655 |
T |
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| Q |
622 |
ttatt--tatatatcgacttaatgatcgacttaaaactacattcgctactatttcctctctcaaagcaatatcatcacgacacctttcacttcaccaaaa |
719 |
Q |
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| T |
7151656 |
ttatttatatatatcgacttaatgatcgacttaaaactacattcgctaccatttcctctctcaaagcaatatcatcacgacgcctttcacttcaccaaaa |
7151755 |
T |
|
| Q |
720 |
atcataaaaat |
730 |
Q |
| |
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||||||||||| |
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| T |
7151756 |
atcataaaaat |
7151766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 7151063 - 7151270
Alignment:
| Q |
1 |
gtatgtcattatcttt--atctatatctctcaatataaattatctttggtaatcataaacactctttaatcgaatcaaatcctttgttcttttaccaatt |
98 |
Q |
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| T |
7151063 |
gtatgtcattatctttttatctatatctctcaatataaattatctttggtaatcataaacactctttaatcgaatcaaatcctttgttcttttaccaatt |
7151162 |
T |
|
| Q |
99 |
tattaatattgtaaatacagctcaggatatactacatcatcaaattttcattgcacgtaataaacacattatgaacattggattataaaccataaatata |
198 |
Q |
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| T |
7151163 |
tattaatattgtaaatacagctcaggatatactacatcatcaaattttcattgcacgtaataaacacattatgaacattggattataaaccataaatata |
7151262 |
T |
|
| Q |
199 |
actatttg |
206 |
Q |
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|||||||| |
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| T |
7151263 |
actatttg |
7151270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 252 - 387
Target Start/End: Complemental strand, 2089399 - 2089260
Alignment:
| Q |
252 |
ttgtttttgtaacaatacatatatagctttgcattctaatatatgcaataaatccttcatttatttctagcttcct----ataatctaacaaaatgaatt |
347 |
Q |
| |
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||||||| || |||||||||||||||||||| ||||||| |||| |||||||| | | |||||||||||||||||| |||||||| ||||||||||| |
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| T |
2089399 |
ttgttttcgttacaatacatatatagctttggattctaagatatacaataaattcatgatttatttctagcttcctataaataatctatcaaaatgaatt |
2089300 |
T |
|
| Q |
348 |
atactttatcagcacaaaaactcatgactagatttaattt |
387 |
Q |
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|| ||||||||||||||||||||||| || |||| |||| |
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| T |
2089299 |
atgttttatcagcacaaaaactcatgattaaatttgattt |
2089260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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