View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_high_21 (Length: 449)
Name: NF6392_high_21
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 16 - 442
Target Start/End: Original strand, 35742262 - 35742688
Alignment:
| Q |
16 |
atcttgctatcttcccgcttctcctacattaagattaagattaataacacaaatcaagttactagcttctgagattaacacgcgatacaatgtagttagt |
115 |
Q |
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| T |
35742262 |
atcttgctatcttcccgcttctcctacattaagattaagattaataacgcaaatcaagttactagcttctgagattaacacgcgatacaatgtagttagt |
35742361 |
T |
|
| Q |
116 |
ctaactgtgttttattaatagtaaaaatggtcgaaaatcgaaagtagatttgtagttttaatttgttctaactaactgtgataccttaagtactaactcc |
215 |
Q |
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| T |
35742362 |
ctaactgtgttttattaatagtaaaaatggtcgaaaatcgaaagtagttttgtagttttaatttgttctaactaactgtgataccttaagtactaactcc |
35742461 |
T |
|
| Q |
216 |
atgcaattggaggaaacatccaccattgcttccttgatctttatcaaaatatggaagtcgaattcaatgttgtgactcttaaacttcttagactcatcat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35742462 |
atgcaattggaggaaacatccaccattgcttccttgatctttatcaaaatatggaagttgaattcaatgttgtgactcttaaacttcttagactcatcat |
35742561 |
T |
|
| Q |
316 |
ctttggttcgttccaaagcatctaaatcggttttaatctgcatgcgttggtgcacttcggtggttagaatgttagaaataattgactgcattaggacaca |
415 |
Q |
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| T |
35742562 |
ctttggttcgttccaaagcatctaaatcggttttaatctgcatgcgttgttgcacttcggtggttagaatgttagaaataattgactgcattaggacaca |
35742661 |
T |
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| Q |
416 |
aatataagtacatataaatgatgatgt |
442 |
Q |
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| T |
35742662 |
aatataagtacatataaatgatgatgt |
35742688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 198 - 355
Target Start/End: Complemental strand, 3424689 - 3424532
Alignment:
| Q |
198 |
accttaagtactaactccatgcaattggaggaaacatccaccattgcttccttgatctttatcaaaatatggaagtcgaattcaatgttgtgactcttaa |
297 |
Q |
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||||| ||| |||||||||||||||| || |||||||||||||||||||| || || || | | || | |||||||||||| ||||| || | ||||| |
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| T |
3424689 |
acctttagtgctaactccatgcaatttgaagaaacatccaccattgcttctttaattttgacaaggatgtagaagtcgaattcgatgttatggcccttaa |
3424590 |
T |
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| Q |
298 |
acttcttagactcatcatctttggttcgttccaaagcatctaaatcggttttaatctg |
355 |
Q |
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| T |
3424589 |
atttcttcaattcttcatctttcgttcgctccaaagcatctaattctgttttgatctg |
3424532 |
T |
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