View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_high_34 (Length: 387)
Name: NF6392_high_34
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_high_34 |
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| [»] scaffold0027 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 43289762 - 43289454
Alignment:
| Q |
17 |
atcttcctccgatgaaccttcaacaccagatgaacttggtgaaatagtagaactaccagcattgggaacgagttttgaattacccgacccgagtaatatg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43289762 |
atcttcctccgatgaaccttcaacaccagatgaacttgatgaaatagtagaactaccagcattaggaacgagttttgaattacccgacccgagtaatatg |
43289663 |
T |
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| Q |
117 |
gtattttcagacccatggctttattcacactcttggtataatcttaacagcatttacgatgaaagggattattttatggaggatcagatatcaatgcaac |
216 |
Q |
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| T |
43289662 |
gtattttcagacccatggctttattcacactcttggtataatcttaacagcatttacgatgaaagggattattttatggaggatcagatatcaatgcaac |
43289563 |
T |
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| Q |
217 |
aagacaacaacaactctgaaaatattagtaaatatgattctttctggttttgagggtacttctttgtggtggtggcagcagc---agcattaacgttaat |
313 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||| |
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| T |
43289562 |
aagaaaacaacaactctgaaaatattagtaaatatgattctttctggttttgagggtacttctttgtggcggcagcagcagcagcagcattaacgttaat |
43289463 |
T |
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| Q |
314 |
tacccattg |
322 |
Q |
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| T |
43289462 |
tacccattg |
43289454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 131 - 243
Target Start/End: Complemental strand, 26092928 - 26092816
Alignment:
| Q |
131 |
atggctttattcacactcttggtataatcttaacagcatttacgatgaaagggattattttatggaggatcagatatcaatgcaacaagacaacaacaac |
230 |
Q |
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| T |
26092928 |
atggctttattcacactcttggtataatgttgacaacatttacgataaaagggattattttatggaggatcagatatcgatgcaacaagacaacaacaac |
26092829 |
T |
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| Q |
231 |
tctgaaaatatta |
243 |
Q |
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| T |
26092828 |
tatgaaaatatta |
26092816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 124 - 230
Target Start/End: Original strand, 25994663 - 25994769
Alignment:
| Q |
124 |
cagacccatggctttattcacactcttggtataatcttaacagcatttacgatgaaagggattattttatggaggatcagatatcaatgcaacaagacaa |
223 |
Q |
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|||||||||| |||||||||||||||||||||||| || | ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| | |
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| T |
25994663 |
cagacccatgactttattcacactcttggtataatgttgatagcatttacgatgaaggagattattttatggaggatcagatatcaatgcaacaagacga |
25994762 |
T |
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| Q |
224 |
caacaac |
230 |
Q |
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| T |
25994763 |
cgacaac |
25994769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 141 - 243
Target Start/End: Complemental strand, 49569 - 49467
Alignment:
| Q |
141 |
tcacactcttggtataatcttaacagcatttacgatgaaagggattattttatggaggatcagatatcaatgcaacaagacaacaacaactctgaaaata |
240 |
Q |
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||||| |||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49569 |
tcacattcttggtataatgttgacagcatttacgatgaaatggattattttatggaggatcagatatcaatgcaacaagacaacaacaactctgaaaata |
49470 |
T |
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| Q |
241 |
tta |
243 |
Q |
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||| |
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| T |
49469 |
tta |
49467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 176
Target Start/End: Original strand, 49578 - 49629
Alignment:
| Q |
125 |
agacccatggctttattcacactcttggtataatcttaacagcatttacgat |
176 |
Q |
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||||| ||| |||||||||||||||||||||||| || |||||||||||||| |
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| T |
49578 |
agaccaatgactttattcacactcttggtataatgttgacagcatttacgat |
49629 |
T |
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