View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_high_36 (Length: 379)
Name: NF6392_high_36
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_high_36 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 193 - 366
Target Start/End: Complemental strand, 41153518 - 41153345
Alignment:
| Q |
193 |
tgtctcaatacaaaaaccttctttaagaatctaaatactatattggatcagccctgtcatcattaaatatattaaagtagttaaaatattggtgttgaag |
292 |
Q |
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| T |
41153518 |
tgtctcaatacaaaaaccttctttaagaatctaaatactatattggatcagccctgtcatcattaaatatattaaagtagttaaaatattggtgttgaag |
41153419 |
T |
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| Q |
293 |
cctgtaagtaaaattttatgttggatcattcaataaaaacacaattatccacttcttatatttagtgtgtgttc |
366 |
Q |
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| T |
41153418 |
cctataagtaaaattttatgttggatcattcaataaaaacacaattatccacttcttatatttagtgtgtgttc |
41153345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 41153693 - 41153586
Alignment:
| Q |
18 |
agtttataattgagtttgagatcttataagaagtcttataaactctacgttgttttttataagctccacgttgaagttaatcgaaatacatctagttcgg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41153693 |
agtttataattgagtttgagatcttataagaagtcttataagctctacgttgttttttataagctccacgttgaagttaatcgaaatacatctagttcga |
41153594 |
T |
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| Q |
118 |
tattgaag |
125 |
Q |
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| T |
41153593 |
tattgaag |
41153586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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