View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_high_37 (Length: 368)
Name: NF6392_high_37
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_high_37 |
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Alignment Details
Target: chr7 (Bit Score: 94; Significance: 8e-46; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 31 - 184
Target Start/End: Original strand, 6209851 - 6210004
Alignment:
| Q |
31 |
gccacaggaggataattggagcatcgcacaatgcctccttgttttccattcaaccccaggtgtgcttgaattcttgaagctcctccactgaacggaatat |
130 |
Q |
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| T |
6209851 |
gccacaggaggataattggagcatcgcctaatgcctccacctttgccattcaaccccagatgtgcttcaattcttgaagctcctccactaaacttatcat |
6209950 |
T |
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| Q |
131 |
tacaatgattgcatatccatttacgaccattttctacttctgtaacgtgtttcc |
184 |
Q |
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| T |
6209951 |
tacaatatttgcatatccatttacgaccattttctacttctgtaacgtgtttcc |
6210004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 41 - 269
Target Start/End: Original strand, 6250937 - 6251172
Alignment:
| Q |
41 |
gataattggagcatcgcacaatgcctccttgttttccattcaaccccaggtgtgcttgaattcttgaagctcctccactgaacggaatattacaatgatt |
140 |
Q |
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| T |
6250937 |
gatatttggagcatggcttaatgcctcctcctttgccattcaaacccagttgtgcttcaattctagaagctcctccactatacttctcattacaataatt |
6251036 |
T |
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| Q |
141 |
gcatatccatt---tacgaccattttctact---tctgtaacgtgtttccgacagtcctcgnnnnnnnnc-tacccattatcaatttctttcctaaacac |
233 |
Q |
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| T |
6251037 |
gcatatccaataattatgaccattttctactccttctgtaacgtgtttccggcagtcctcgttttttttcctacccattatcaatttctttcctaaacac |
6251136 |
T |
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| Q |
234 |
aggtccaaggttgaattaaaataacagaataagcat |
269 |
Q |
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| T |
6251137 |
agatccaaggttgaattcaaaaaacagaataagcat |
6251172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 292 - 352
Target Start/End: Original strand, 6251307 - 6251367
Alignment:
| Q |
292 |
ttcttttcatggaaaaaataggatctagttgaaaatttgtacacgattaattggttttcat |
352 |
Q |
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| T |
6251307 |
ttcttttcatggaaaaaataggatctagttgaaaatttgtacacgattaattggttttcat |
6251367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 41 - 195
Target Start/End: Original strand, 6183391 - 6183542
Alignment:
| Q |
41 |
gataattggagcatcgcacaatgcctccttgttttccattcaaccccaggtgtgcttgaattcttgaagctcctccactgaacggaatattacaatgatt |
140 |
Q |
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| T |
6183391 |
gatatttggagcatcgcctaatgcctcctt---tgccattcaaacccagatgtgcttcaattctagaagctcctccactatactcaatactacaataatt |
6183487 |
T |
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| Q |
141 |
gcatatccatttacgaccattttctacttctgtaacgtgtttccgacagtcctcg |
195 |
Q |
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| T |
6183488 |
gcatatccatgtattcttattttctacttctgtaacgtgtttccggcagtcctcg |
6183542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 88 - 242
Target Start/End: Original strand, 6111327 - 6111482
Alignment:
| Q |
88 |
aggtgtgcttgaattcttgaagctcctccactgaacggaatattacaatgattgcatatccatttacgaccattttctacttctgtaacgtgtttccgac |
187 |
Q |
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| T |
6111327 |
aggtgtgtttgaattctagaagctcctccactaaacttatcattacaataattgcatatccatttaagaccattttctactcttgtaacatgtttccagc |
6111426 |
T |
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| Q |
188 |
agtcctcg-nnnnnnnnctacccattatcaatttctttcctaaacacaggtccaag |
242 |
Q |
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| T |
6111427 |
agtgctcgtgttttcctctacccattatcaatatctttcctaaacacagatccaag |
6111482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 271 - 349
Target Start/End: Original strand, 6183762 - 6183841
Alignment:
| Q |
271 |
caaagaaagatcaagtttattttcttttcatggaaaaaa-taggatctagttgaaaatttgtacacgattaattggtttt |
349 |
Q |
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| T |
6183762 |
caaagaaatatctagtttattttcttttcatggaaaaaaatagaatctagttgaaaatttgtgcacgattaatcggtttt |
6183841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 88 - 176
Target Start/End: Original strand, 6090364 - 6090452
Alignment:
| Q |
88 |
aggtgtgcttgaattcttgaagctcctccactgaacggaatattacaatgattgcatatccatttacgaccattttctacttctgtaac |
176 |
Q |
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| T |
6090364 |
aggtctgcttcaattctcgaagcatctccattgaacttaagattacaatgcttgcatatccattcacgaccgttttctacttttgtaac |
6090452 |
T |
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