View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_high_45 (Length: 356)
Name: NF6392_high_45
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_high_45 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 15 - 337
Target Start/End: Complemental strand, 1445262 - 1444940
Alignment:
| Q |
15 |
cagagaacaccaaccttattgaactcagatcaaactccgccaccgacggactcttcgccaacgccaaaaccaacggcggaacaaccatcgccaccgtaac |
114 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1445262 |
cagacaacaccaaccttattgaactcagatcaaactccgccaccgacggactcttcgccaacgccaaaaccaacggcggaacaaccatcgccaccgtaac |
1445163 |
T |
|
| Q |
115 |
cttatgtttttgtataagaccaagcaaagtcccaatctcaaatttatgcatcaacaaaaccccacttcctgctctcagtgcacacaataacacactgttg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1445162 |
cttatgtttttgtataagaccaagcaaagtcccaatctcaaatttatgcatcaacaaaaccccacttcctgctctcagtgcacacaataacacactgttg |
1445063 |
T |
|
| Q |
215 |
agagaaaatatatgaaacaatggaagaacacaaagaagaacatcttctgttgttaaatgtagatttggattctctccatccacttgttgtgccacacttg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1445062 |
agagaaaatatatgaaacaatggaagaacacaaagaagaacatcttctgttgttaaatgtagatttggattctctccatccacttgttgtgccacacttg |
1444963 |
T |
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| Q |
315 |
ttgttaaactcttgtgtgttaga |
337 |
Q |
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||||||||||||||||||||||| |
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| T |
1444962 |
ttgttaaactcttgtgtgttaga |
1444940 |
T |
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