View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6392_high_47 (Length: 343)

Name: NF6392_high_47
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6392_high_47
NF6392_high_47
[»] chr3 (12 HSPs)
chr3 (128-327)||(24358292-24358491)
chr3 (137-324)||(24344361-24344548)
chr3 (128-327)||(24313794-24313994)
chr3 (168-320)||(24351552-24351704)
chr3 (137-324)||(24354633-24354820)
chr3 (133-324)||(24364808-24364999)
chr3 (169-327)||(24369645-24369803)
chr3 (137-324)||(24361986-24362176)
chr3 (8-52)||(24364683-24364727)
chr3 (14-52)||(24369920-24369958)
chr3 (8-52)||(24354902-24354946)
chr3 (8-52)||(24358564-24358608)


Alignment Details
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 128 - 327
Target Start/End: Complemental strand, 24358491 - 24358292
Alignment:
Q  128 gaagaataatctatttctactgcattccggtcaaatatgtgtacatcaaacatggaagttcctccatattcaaacaccaccaaagagccatgtccaagag 227  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||| |  |||||||||||| ||||||||||||||||||||||    
T  24358491 gaagaataatctatttctactgcattccggccaaaaatgtgtacatcaaacttggaagttcttttatattcaaacacaaccaaagagccatgtccaagag 24358392  T
Q  228 agtaattttctgtaaaaagtttccaacccttttcaaaccaaatttcaccattgacttttttccagtaaattttccatttagtgccatcaggaggctttat 327  Q
    |||||||||| ||||||  |||||||||||||||||||||||| || ||||||| ||||||||| |||| ||||||||||||||||||||||||||||||    
T  24358391 agtaattttcagtaaaatatttccaacccttttcaaaccaaatctcgccattgatttttttccaataaactttccatttagtgccatcaggaggctttat 24358292  T

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Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 137 - 324
Target Start/End: Complemental strand, 24344548 - 24344361
Alignment:
Q  137 tctatttctactgcattccggtcaaatatgtgtacatcaaacatggaagttcctccatattcaaacaccaccaaagagccatgtccaagagagtaatttt 236  Q
    ||||||||||||||||||||  ||| |||   |||||||||  | |||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  24344548 tctatttctactgcattccgaccaagtattactacatcaaatttcgaagttcctttatattcaaacaccaccaaagagccatgtccaagagagtaatttt 24344449  T
Q  237 ctgtaaaaagtttccaacccttttcaaaccaaatttcaccattgacttttttccagtaaattttccatttagtgccatcaggaggctt 324  Q
    | ||||||  |||||||||||||||||||||||| ||||||| || ||||||||| |||| |||||||||||||||||| ||||||||    
T  24344448 cagtaaaatatttccaacccttttcaaaccaaatctcaccatcgatttttttccaataaactttccatttagtgccatctggaggctt 24344361  T

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Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 128 - 327
Target Start/End: Complemental strand, 24313994 - 24313794
Alignment:
Q  128 gaagaataatctatttctactgcattccggtcaaatatgtgtacatcaaacatggaagttcctccatattcaaacaccaccaaagagccatgtccaagag 227  Q
    ||||||||||||||||||| ||||||| |||||| |||| ||||||||||| | |||||||||  |||||  ||||  |||||| | |||||||||||||    
T  24313994 gaagaataatctatttctagtgcattctggtcaagtatgagtacatcaaactttgaagttcctttatatttgaacattaccaaacacccatgtccaagag 24313895  T
Q  228 agtaattttctgtaaaaagtttccaacccttttcaaaccaaatttcaccattga-cttttttccagtaaattttccatttagtgccatcaggaggcttta 326  Q
    |||||||||| ||||||| |||||||||| ||||||||||||| ||||||||||  ||||||||| || | |||||||||||||||||||||||||||||    
T  24313894 agtaattttcagtaaaaaatttccaacccctttcaaaccaaatctcaccattgattttttttccaatacactttccatttagtgccatcaggaggcttta 24313795  T
Q  327 t 327  Q
    |    
T  24313794 t 24313794  T

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Target: chr3; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 168 - 320
Target Start/End: Complemental strand, 24351704 - 24351552
Alignment:
Q  168 gtacatcaaacatggaagttcctccatattcaaacaccaccaaagagccatgtccaagagagtaattttctgtaaaaagtttccaacccttttcaaacca 267  Q
    ||||||||||| |||||||||||  ||||| ||||||||||||| | ||||||   |||||||||||||| |||||| ||||||||||||||||||||||    
T  24351704 gtacatcaaacttggaagttcctttatatttaaacaccaccaaacatccatgttgtagagagtaattttcagtaaaatgtttccaacccttttcaaacca 24351605  T
Q  268 aatttcaccattgacttttttccagtaaattttccatttagtgccatcaggag 320  Q
    ||| |||||||||| |||||||||||||| |||||||||||||||||||||||    
T  24351604 aatctcaccattgatttttttccagtaaactttccatttagtgccatcaggag 24351552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 137 - 324
Target Start/End: Complemental strand, 24354820 - 24354633
Alignment:
Q  137 tctatttctactgcattccggtcaaatatgtgtacatcaaacatggaagttcctccatattcaaacaccaccaaagagccatgtccaagagagtaatttt 236  Q
    |||||||||||||||||| || ||| |||||||||||||||| | |||  ||||  |||||  |||||||||||| | ||||||||||||||||||||||    
T  24354820 tctatttctactgcattctggccaagtatgtgtacatcaaactttgaatctcctttatatttgaacaccaccaaacaaccatgtccaagagagtaatttt 24354721  T
Q  237 ctgtaaaaagtttccaacccttttcaaaccaaatttcaccattgacttttttccagtaaattttccatttagtgccatcaggaggctt 324  Q
    |  |||||  |||||||||||||||||||||||| || ||||||| ||||||||| |||| |||||||||||||||||| ||||||||    
T  24354720 caataaaatatttccaacccttttcaaaccaaatctctccattgatttttttccaataaactttccatttagtgccatctggaggctt 24354633  T

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Target: chr3; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 133 - 324
Target Start/End: Original strand, 24364808 - 24364999
Alignment:
Q  133 ataatctatttctactgcattccggtcaaatatgtgtacatcaaacatggaagttcctccatattcaaacaccaccaaagagccatgtccaagagagtaa 232  Q
    |||||||||||||||||||||| || ||| |||   |||||||||| |||||||||||  ||||||||||| ||||||| |||||||| |||||||||||    
T  24364808 ataatctatttctactgcattctggccaagtattactacatcaaacttggaagttcctttatattcaaacatcaccaaacagccatgttcaagagagtaa 24364907  T
Q  233 ttttctgtaaaaagtttccaacccttttcaaaccaaatttcaccattgacttttttccagtaaattttccatttagtgccatcaggaggctt 324  Q
    ||||| ||||||  ||||||||||||||||||||| || || ||||||| ||||||||| |||| |||||||  ||||||||||||| ||||    
T  24364908 ttttcagtaaaagttttccaacccttttcaaaccacatctcgccattgatttttttccaataaactttccatccagtgccatcaggaagctt 24364999  T

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Target: chr3; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 169 - 327
Target Start/End: Complemental strand, 24369803 - 24369645
Alignment:
Q  169 tacatcaaacatggaagttcctccatattcaaacaccaccaaagagccatgtccaagagagtaattttctgtaaaaagtttccaacccttttcaaaccaa 268  Q
    |||||||||| || ||||||||  ||||||||||||||||||  | ||||||||||||||||||||||| ||||||  ||||||||||||||||||||||    
T  24369803 tacatcaaacttgaaagttcctttatattcaaacaccaccaagcaaccatgtccaagagagtaattttcagtaaaagttttccaacccttttcaaaccaa 24369704  T
Q  269 atttcaccattgacttttttccagtaaattttccatttagtgccatcaggaggctttat 327  Q
    || |||||||||| ||||||||| |||| ||||||||||||| ||||||||| ||||||    
T  24369703 atctcaccattgatttttttccaataaactttccatttagtgtcatcaggagtctttat 24369645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 137 - 324
Target Start/End: Complemental strand, 24362176 - 24361986
Alignment:
Q  137 tctatttctactgcattccggtcaaatatgtgtacatcaaacatggaagttcctcc---atattcaaacaccaccaaagagccatgtccaagagagtaat 233  Q
    ||||||||||||||||||  | ||| ||||||||||   ||| | ||||||||| |   ||| | ||||| ||||||| | |||||||||||||||||||    
T  24362176 tctatttctactgcattcttgccaagtatgtgtacaaggaacttagaagttccttcttcataattaaacaacaccaaaaacccatgtccaagagagtaat 24362077  T
Q  234 tttctgtaaaaagtttccaacccttttcaaaccaaatttcaccattgacttttttccagtaaattttccatttagtgccatcaggaggctt 324  Q
    |||| ||||||  ||||||||||||||| |||||||| |||||||||| ||||||||| |||| |||||||||||| ||||||||||||||    
T  24362076 tttcagtaaaagttttccaacccttttcgaaccaaatctcaccattgatttttttccaataaactttccatttagttccatcaggaggctt 24361986  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 24364683 - 24364727
Alignment:
Q  8 gaaatgaaaggcgatctttgtctagccttcttccgattaagccat 52  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||    
T  24364683 gaaataaaaggtgatctttgtctagccttcttccgattaagccat 24364727  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 24369958 - 24369920
Alignment:
Q  14 aaaggcgatctttgtctagccttcttccgattaagccat 52  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  24369958 aaaggtgatctttgtctagccttcttccgattaagccat 24369920  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 24354946 - 24354902
Alignment:
Q  8 gaaatgaaaggcgatctttgtctagccttcttccgattaagccat 52  Q
    |||| |||||| |||||||||||||| |||||| |||||||||||    
T  24354946 gaaacgaaaggtgatctttgtctagcattcttctgattaagccat 24354902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 24358608 - 24358564
Alignment:
Q  8 gaaatgaaaggcgatctttgtctagccttcttccgattaagccat 52  Q
    |||| |||||| ||||||||| |||||||||||| ||||||||||    
T  24358608 gaaacgaaaggtgatctttgtttagccttcttccaattaagccat 24358564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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