View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_high_49 (Length: 340)
Name: NF6392_high_49
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_high_49 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 41737063 - 41737402
Alignment:
| Q |
1 |
ctgacacgttgacacctctcgtaatttgagaaaatgaattaacgattgtatgtgtcggacaccgacactagacatacatttgatgaaaattgtcggtgct |
100 |
Q |
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| T |
41737063 |
ctgacacgttgacacctctcgtaatttgagaaaatgaattaacgattgtatgtgtcggacaccgacactagacatacatttgatgaaaattgtcggtgct |
41737162 |
T |
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| Q |
101 |
atggaggtagaaacgtgatttgttcnnnnnnnctttctttctttataaccattgctttttgtacaatttgtgcagagaaagagtgtttgtgccaaaaaca |
200 |
Q |
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| T |
41737163 |
atggaggtagaaacgtgatttgttcattttttctttctttctttataaccattgctttatgtacaatttgtgcagagaaagagtgtttgtgccaaaaaca |
41737262 |
T |
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| Q |
201 |
aagccttacatatcatttataggtagaagaaatctcacagcaagtcctgtgattacttggaacagtaaatcatcagacagaggtccaaatggtcaagaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41737263 |
aagccttacatatcatttataggtagaagaaatctcacagcaagtcctgtgattacttggaacagtaaatcatcagacagaggtccaaatggtcaagaat |
41737362 |
T |
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| Q |
301 |
tgggcacatatggttcagcaactgtagcagttgaatcaaa |
340 |
Q |
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| T |
41737363 |
tgggcacatatggttcagcaactgtagcagttgaatcaaa |
41737402 |
T |
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