View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_high_55 (Length: 318)
Name: NF6392_high_55
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_high_55 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 7659521 - 7659825
Alignment:
| Q |
1 |
ctggaccaaaaccatggcctataataggtaacatgccacacttgggtcctgccccacaccagtctattgcagccttggcaaaaatccatggccctttgat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7659521 |
ctggaccaaaaccatggcctataataggtaacatgccacacttgggtcctgccccacaccagtctattgcagccttggcaaaaattcatggccctttgat |
7659620 |
T |
|
| Q |
101 |
gcacctcaaattaggttttgtggacgttatcgtggcggcttcaggctccgttgccgaacaattcttaaaggttcatgatgctaactttagtagccggcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7659621 |
gcacctcaaattaggttttgtggacgttatcgtggcggcttctggctccgttgccgaacaattcttaaaggttcatgatgctaactttagtagccggcca |
7659720 |
T |
|
| Q |
201 |
cccaacaccggagctaaatatatagcttataactatcaagatcttgtgtttgcaccttatggtccacggtggcgaatgctccgaaaaatctcctcagttc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7659721 |
cccaacaccggagctaaatatatagcttataactatcaagaccttgtgtttgcaccttatggtccgcggtggcgaatgctccgaaaaatctcctcagttc |
7659820 |
T |
|
| Q |
301 |
atctc |
305 |
Q |
| |
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||||| |
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| T |
7659821 |
atctc |
7659825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 7624164 - 7623860
Alignment:
| Q |
1 |
ctggaccaaaaccatggcctataataggtaacatgccacacttgggtcctgccccacaccagtctattgcagccttggcaaaaatccatggccctttgat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7624164 |
ctggaccaaaaccatggcctataataggtaacatgccacacttgggtcctgccccacaccagtctattgcagccttggcaaaaatccatggccctttaat |
7624065 |
T |
|
| Q |
101 |
gcacctcaaattaggttttgtggacgttatcgtggcggcttcaggctccgttgccgaacaattcttaaaggttcatgatgctaactttagtagccggcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7624064 |
gcacctcaaattaggttttgtggacgttatcgtggcggcttcaggctccgttgccgaacaattcttaaaggttcatgatgctaactttagtagccggcca |
7623965 |
T |
|
| Q |
201 |
cccaacaccggagctaaatatatagcttataactatcaagatcttgtgtttgcaccttatggtccacggtggcgaatgctccgaaaaatctcctcagttc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
7623964 |
cccaacaccggagctaaatatatagcttataactatcaagatcttgtgtttgccccttatggtccgaggtggcgaatgctccgaaaaatctcctccgttc |
7623865 |
T |
|
| Q |
301 |
atctc |
305 |
Q |
| |
|
||||| |
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| T |
7623864 |
atctc |
7623860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 7675148 - 7675437
Alignment:
| Q |
1 |
ctggaccaaaaccatggcctataataggtaacatgccacacttgggtcctgccccacaccagtctattgcagccttggcaaaaatccatggccctttgat |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||| | |||||| | || ||||| |||||||| ||| ||||| ||||||| ||| | ||||||||||||| |
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| T |
7675148 |
ctggaccaaaaccatggccaataataggtaacttaccacaccttggccctgcaccacaccaatctcttgcaaccttggctgaaacctatggccctttgat |
7675247 |
T |
|
| Q |
101 |
gcacctcaaattaggttttgtggacgttatcgtggcggcttcaggctccgttgccgaacaattcttaaaggttcatgatgctaactttagtagccggcca |
200 |
Q |
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||||||||||||||| | ||||| || |||||||||||||| | |||||| || ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7675248 |
gcacctcaaattaggctcggtggatgtgatcgtggcggcttcggcctccgtggcggaacaattcttaaaggtacatgatgctaactttagtagccggcca |
7675347 |
T |
|
| Q |
201 |
cccaacaccggagctaaatatatagcttataactatcaagatcttgtgtttgcaccttatggtccacggtggcgaatgctccgaaaaatc |
290 |
Q |
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||||| |||||||||| || |||| |||||| |||||||| |||||||||| |||||||||||| |||||||| | ||| |||||||| |
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| T |
7675348 |
cccaatgccggagctaagtacataggttataattatcaagaccttgtgtttggtccttatggtccaaggtggcgactactcagaaaaatc |
7675437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 274
Target Start/End: Original strand, 45477623 - 45477762
Alignment:
| Q |
135 |
gcggcttcaggctccgttgccgaacaattcttaaaggttcatgatgctaactttagtagccggccacccaacaccggagctaaatatatagcttataact |
234 |
Q |
| |
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|||||||| | ||| || || |||||||||||||| ||||||||| | || ||| |||||||||| | ||| |||| || ||||| |||| ||||| | |
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| T |
45477623 |
gcggcttccgcctcggtcgctgaacaattcttaaaagttcatgataccaatttttctagccggccaactaactccggcgccaaatacttagcatataatt |
45477722 |
T |
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| Q |
235 |
atcaagatcttgtgtttgcaccttatggtccacggtggcg |
274 |
Q |
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||||||||||||| ||||| |||||||| ||||||||||| |
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| T |
45477723 |
atcaagatcttgtttttgctccttatggaccacggtggcg |
45477762 |
T |
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