View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_high_58 (Length: 297)
Name: NF6392_high_58
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_high_58 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 4972869 - 4972597
Alignment:
| Q |
19 |
tacttccaataatttccaaaagttttggggtggtcttgacttgcttgctttccatcatgtgaaggatccgaggcagaaggcaacggtgtatgtgactgat |
118 |
Q |
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| T |
4972869 |
tacttccaataatttccaaaagttttggggtggtcttgacttgcttgctttccatcatgtgaaggatccgaggcagaaggcaacggtgtatgtgactgat |
4972770 |
T |
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| Q |
119 |
tttgtttcttattcgcatctggaacagctggaaaagatccactactaatgctaattggaaggttactgaaatctgttttaggtccaccactataaggtgc |
218 |
Q |
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| T |
4972769 |
tttgtttcttattcgcatctggaacagctggaaaagatccactactaatgctaattggaaggttactgaaatctgttttaggtccaccactataaggtgc |
4972670 |
T |
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| Q |
219 |
ggctggaaggttattcgattgatcgagtaacttacgatgcgcataattgattagatttggcatgttcatctca |
291 |
Q |
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| T |
4972669 |
ggctggaaggttattcgattgatcgagtaacttacgacgcgcataattgattagatttggcatgttcatctca |
4972597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 4990777 - 4990505
Alignment:
| Q |
19 |
tacttccaataatttccaaaagttttggggtggtcttgacttgcttgctttccatcatgtgaaggatccgaggcagaaggcaacggtgtatgtgactgat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4990777 |
tacttccaataatttccaaaagttttggggtggtcttgacttgcttgctttccatcatgtgaaggatccgaggcagaaggcaacggtgtatgtgactgat |
4990678 |
T |
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| Q |
119 |
tttgtttcttattcgcatctggaacagctggaaaagatccactactaatgctaattggaaggttactgaaatctgttttaggtccaccactataaggtgc |
218 |
Q |
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| T |
4990677 |
tttgtttcttattcgcatctggaacagctggaaaagatccactactaatgctaattggaaggttactgaaatctgttttaggtccaccactataaggtgc |
4990578 |
T |
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| Q |
219 |
ggctggaaggttattcgattgatcgagtaacttacgatgcgcataattgattagatttggcatgttcatctca |
291 |
Q |
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| T |
4990577 |
ggctggaaggttattcgattgatcgagtaacttacgacgcgcataattgattagatttggcatgttcatctca |
4990505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 115 - 277
Target Start/End: Original strand, 35833262 - 35833424
Alignment:
| Q |
115 |
tgattttgtttcttattcgcatctggaacagctggaaaagatccactactaatgctaattggaaggttactgaaatctgttttaggtccaccactataag |
214 |
Q |
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||||||||||||||||| |||||||| ||||| || |||||||||||||| || |||||||| ||||| | | | |||||||||| ||||||| |
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| T |
35833262 |
tgattttgtttcttattggcatctggcacagccgggaaagatccactacttattgaaattggaataacactgatctgtatagtaggtccaccgctataag |
35833361 |
T |
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| Q |
215 |
gtgcggctggaaggttattcgattgatcgagtaacttacgatgcgcataattgattagatttg |
277 |
Q |
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|||| |||| ||||||||| || ||||| || ||||||||| | ||| || |||||||||||| |
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| T |
35833362 |
gtgcagctgcaaggttattggactgatcaagcaacttacgacgtgcagaactgattagatttg |
35833424 |
T |
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