View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_high_60 (Length: 287)
Name: NF6392_high_60
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_high_60 |
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Alignment Details
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 55383461 - 55383557
Alignment:
| Q |
1 |
ccacaagttaacattactgctcgctcactctgcttcccttacttcctctccacccatttctttgcattctctttctattctataaataaataagtaa |
97 |
Q |
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| T |
55383461 |
ccacaagttaacattactgctcgctcactctgcttcccttacttcctctccacccatttctttgcattctctttctattctataaataaataagtaa |
55383557 |
T |
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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 19341907 - 19341979
Alignment:
| Q |
95 |
taagagtttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacata |
169 |
Q |
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| T |
19341907 |
taagagtttaattgtggtgcactgactgtgtaaa--agaactttacacagtcagccaataacattttgccacata |
19341979 |
T |
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Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 102 - 279
Target Start/End: Original strand, 53730768 - 53730944
Alignment:
| Q |
102 |
ttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacataatctttttnnnnnnnnntgttaatttattcaa |
201 |
Q |
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| T |
53730768 |
ttaattgtggtgcactgaccgtgtaaa--agaactttacacagttagccaataaattttttcaacataatcctttttaaaaaaaatgttaatttattcaa |
53730865 |
T |
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| Q |
202 |
taaaaggtaaattctgaaggtgtgcctctccacgttcttgtc--agttgtgtcgttactctccccattcttctctctgct |
279 |
Q |
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| T |
53730866 |
taaaaggtaaattctgaaggtgtgcctctccacgttcttgtctttgttgtgtcgttactc-ccccattcttctctctgct |
53730944 |
T |
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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 53731353 - 53731276
Alignment:
| Q |
98 |
gagtttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacataatcttttt |
177 |
Q |
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| T |
53731353 |
gagtttaattgtggtgcactgactgtgtaaa--agaactttacacagtcaaccaataacattttgccacataatcctttt |
53731276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 187 - 279
Target Start/End: Original strand, 596765 - 596859
Alignment:
| Q |
187 |
tgttaatttattcaataaaaggtaaattctgaaggtgtgcctctccacgttcttgtc--agttgtgtcgttactctccccattcttctctctgct |
279 |
Q |
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| T |
596765 |
tgttaatttatacaataaaaggtaaattctgaaggtgtgcctctccacgttcttgtctttgttgtgtcgttactccccccattattctctatgct |
596859 |
T |
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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 97 - 177
Target Start/End: Complemental strand, 597268 - 597190
Alignment:
| Q |
97 |
agagtttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacataatcttttt |
177 |
Q |
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| T |
597268 |
agagtttaattgtggtgcactgactgtgtaaa--agaactttacacagtcagtcaataacattttgccacataatcctttt |
597190 |
T |
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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 26936796 - 26936874
Alignment:
| Q |
97 |
agagtttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacataatcttttt |
177 |
Q |
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| T |
26936796 |
agagtttaattgtggtgcactgactgtgtaaa--agaactttacacagtcagccaataacattttgccacataatcctttt |
26936874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 276
Target Start/End: Complemental strand, 26937344 - 26937205
Alignment:
| Q |
130 |
aagaactttacatagtcggccaataacattttgccacataatctttttnnnnnnnnntgttaatttattcaataaaaggtaaattctgaaggtgtgcctc |
229 |
Q |
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| T |
26937344 |
aagaaatttacacagtcagccaataaaattttgccacataatcctttttaaaaaaa-tgttaatttattcaataaaaggtaa--------ggtgtgcctc |
26937254 |
T |
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| Q |
230 |
tccacgttcttgtc--agttgtgtcgttactctccccattcttctctct |
276 |
Q |
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| T |
26937253 |
tccacgttcttgtctttgttgtgtcgttactccccccatttttttctct |
26937205 |
T |
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