View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_high_63 (Length: 284)
Name: NF6392_high_63
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_high_63 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 1938034 - 1938289
Alignment:
| Q |
18 |
actctataattgcatgcattttatacctcagcaataattgtgatatgaagtgtggaatcaccaaatgggaaaatggtagtacttgttatagatagatgaa |
117 |
Q |
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| T |
1938034 |
actctataattgcatgcattttatacctcagcaataattgtgatatgaagtgtggaatcaccaaatgggaaaatggtagtacttgttatagatagatgaa |
1938133 |
T |
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| Q |
118 |
ggtttgtaaccaagtttagtattttgtgcacaatattatcattttgcttcttctcacattggattcaatcatcacactgttttctgagactcttagtgtg |
217 |
Q |
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| T |
1938134 |
ggtttgtaaccaagtttagtattttgtgcacaatattatcattttgcttcttctcacattggattcaatcatcacactgttttctgagactcttagtgtg |
1938233 |
T |
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| Q |
218 |
actttaggtaatactatttcatcactgaatctataactagccaagtttgatccaca |
273 |
Q |
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| T |
1938234 |
actttaggtaatactatttcatcactgaatctataactagccaagtttgatccaca |
1938289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 23751867 - 23751917
Alignment:
| Q |
223 |
aggtaatactatttcatcactgaatctataactagccaagtttgatccaca |
273 |
Q |
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| T |
23751867 |
aggtagtactatttcatcactgaatctataactagccaagtttgattcaca |
23751917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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