View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_high_68 (Length: 272)
Name: NF6392_high_68
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_high_68 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 3480005 - 3479765
Alignment:
| Q |
14 |
gaaggttttaattgttcaatatgctactattctagaactcaaaagcaggagtcaaaatacaagtactatccaaatgttgttgagttagcatccaactgcg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3480005 |
gaaggttttaattgttcaatatgctactattctagaactcaaaagcaggagtcaaaatacaagtactatccaaatgttgttgagttagcatccaactgcg |
3479906 |
T |
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| Q |
114 |
acatactagttgttgcctgctcacttacagaggaaacccatcacatcatcaaccgggaggtcatcaatgcacttggtccgaaaggtttccttattaacat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3479905 |
acatactagttgttgcctgctcacttacagaggaaacccatcacatcatcaaccgggaggtcatcaatgcacttggtccgaaaggtttccttattaacat |
3479806 |
T |
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| Q |
214 |
cggccgaggtaagcatgttgatgagccagagctggtctctg |
254 |
Q |
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| T |
3479805 |
cggccgaggtaagcatgttgatgagccagagctggtctctg |
3479765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 3519613 - 3519373
Alignment:
| Q |
14 |
gaaggttttaattgttcaatatgctactattctagaactcaaaagcaggagtcaaaatacaagtactatccaaatgttgttgagttagcatccaactgcg |
113 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3519613 |
gaaggttttaattgttcaatatgttactattctagaactcaaaagcaggaaccaaaatacaagtactatccaaatgttgttgagttagcatccaactgcg |
3519514 |
T |
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| Q |
114 |
acatactagttgttgcctgctcacttacagaggaaacccatcacatcatcaaccgggaggtcatcaatgcacttggtccgaaaggtttccttattaacat |
213 |
Q |
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|||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
3519513 |
acatactagtcgttgcctgctctcttacagatgaaacccatcacatcatcaaccgggaggtcatcaatgcacttggtccgaagggtttcctaattaacat |
3519414 |
T |
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| Q |
214 |
cggccgaggtaagcatgttgatgagccagagctggtctctg |
254 |
Q |
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| T |
3519413 |
cggtcgaggtaagcatgttgatgagccagagctggtctctg |
3519373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 3536797 - 3537037
Alignment:
| Q |
14 |
gaaggttttaattgttcaatatgctactattctagaactcaaaagcaggagtcaaaatacaagtactatccaaatgttgttgagttagcatccaactgcg |
113 |
Q |
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|
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
3536797 |
gaaggttttaattgttcaatatgttactattctagaactcaaaagcaggaaccaaaatacaagtactatccaagccttattgagttagcatccaactgcg |
3536896 |
T |
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| Q |
114 |
acatactagttgttgcctgctcacttacagaggaaacccatcacatcatcaaccgggaggtcatcaatgcacttggtccgaaaggtttccttattaacat |
213 |
Q |
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||||||| |||||||||||| | |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| |||| |||||||| |
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| T |
3536897 |
acatactggttgttgcctgccctcttacagaggaaactcatcacatcatcaaccgggaggtcattaatgcacttggtccgaagggtgtcctaattaacat |
3536996 |
T |
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| Q |
214 |
cggccgaggtaagcatgttgatgagccagagctggtctctg |
254 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |
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| T |
3536997 |
tggccgaggtaagcatgttgatgagccagagctcgtctctg |
3537037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 3523161 - 3522921
Alignment:
| Q |
14 |
gaaggttttaattgttcaatatgctactattctagaactcaaaagcaggagtcaaaatacaagtactatccaaatgttgttgagttagcatccaactgcg |
113 |
Q |
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||||| ||||| ||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||| | |
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| T |
3523161 |
gaaggctttaactgtccaatatcctactattcgagaactcaaaagcaggagtcaaaatacaagtactatccaagtgttgttgagcttgcatccaactgtg |
3523062 |
T |
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| Q |
114 |
acatactagttgttgcctgctcacttacagaggaaacccatcacatcatcaaccgggaggtcatcaatgcacttggtccgaaaggtttccttattaacat |
213 |
Q |
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| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| || |||||||| |||||||| |
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| T |
3523061 |
atatactagttgttgcctgcccccttacagaggaaacccatcacatcatcaaccgggaggtcattaacgcactcggtccaaagggtttcctaattaacat |
3522962 |
T |
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| Q |
214 |
cggccgaggtaagcatgttgatgagccagagctggtctctg |
254 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3522961 |
cggtcgaggtaagcatgttgatgagccagagctggtctctg |
3522921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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