View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_high_69 (Length: 268)
Name: NF6392_high_69
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_high_69 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 254
Target Start/End: Complemental strand, 11150311 - 11150063
Alignment:
| Q |
9 |
agagacccactcactctcccc-ttatggctatgctatcttacttgtcggactgagaccaatgagtcagtgatttctcagaccaaagtacatgactcaata |
107 |
Q |
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| T |
11150311 |
agagacccactcactctccccattatggccatgctatcttacttgtcggactgagaccaatgagtcagtgatttctcagaccaaagtacatgactcaata |
11150212 |
T |
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| Q |
108 |
tgacagaatgattactgagatttctcttttatgcattatgaaatatcgacacttctcagattaggcgtatttcggtatcagacatgtgttctgtccgaca |
207 |
Q |
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| T |
11150211 |
tgacagaatgattactgagatttctcttttatgcattatgaaatatcgacacttctcagattaggcgtatttcggtatcagacatgtgttctgtccgaca |
11150112 |
T |
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| Q |
208 |
ctgatacggcgctgacacat--atatttacattgaattatgccaccttt |
254 |
Q |
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| T |
11150111 |
ctgatacgacactgacacatatatatttacattgaattatgcgaccttt |
11150063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 2 - 129
Target Start/End: Original strand, 11173329 - 11173456
Alignment:
| Q |
2 |
ttcagagagagacccactcactctccccttatggctatgctatcttacttgtcggactgagaccaatgagtcagtgatttctcagaccaaagtacatgac |
101 |
Q |
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| T |
11173329 |
ttcagagagagacccactcactcgggccttatggctatgttatcttacttgtctgactgagaccaatgagtcagtgatttttcagaccaaagtacatgat |
11173428 |
T |
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| Q |
102 |
tcaatatgacagaatgattactgagatt |
129 |
Q |
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| T |
11173429 |
gcaatatgatagaatgattactgagatt |
11173456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 29655927 - 29655975
Alignment:
| Q |
163 |
tcagattaggcgtatttcggtatcagacatgtgttctgtccgacactga |
211 |
Q |
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| T |
29655927 |
tcagattaggcgtgtttcggtgtcagatatgtgttgtgtccgacactga |
29655975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 28524544 - 28524491
Alignment:
| Q |
155 |
gacacttctcagattaggcgtatttcggtatcagacatgtgttctgtccgacac |
208 |
Q |
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| T |
28524544 |
gacacttctcagattaggcgtgtttctgtgtcagacacgtgttgtgtccgacac |
28524491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 245
Target Start/End: Complemental strand, 35056986 - 35056896
Alignment:
| Q |
155 |
gacacttctcagattaggcgtatttcggtatcagacatgtgttctgtccgacactgatacggcgctgacacatatatttacattgaattat |
245 |
Q |
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| T |
35056986 |
gacactcctcagattaggcgtgtttccgtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgaattat |
35056896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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