View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6392_high_73 (Length: 260)

Name: NF6392_high_73
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6392_high_73
NF6392_high_73
[»] chr3 (5 HSPs)
chr3 (20-247)||(55211638-55211861)
chr3 (141-247)||(30912028-30912135)
chr3 (72-239)||(36326473-36326640)
chr3 (145-247)||(32414709-32414816)
chr3 (80-220)||(14029319-14029469)
[»] chr7 (8 HSPs)
chr7 (72-247)||(42513062-42513239)
chr7 (151-247)||(41712267-41712364)
chr7 (147-247)||(38572287-38572388)
chr7 (91-239)||(49017108-49017258)
chr7 (72-220)||(30456308-30456456)
chr7 (69-167)||(6102956-6103056)
chr7 (89-193)||(11206499-11206604)
chr7 (72-220)||(30452703-30452847)
[»] chr6 (6 HSPs)
chr6 (71-247)||(4834692-4834870)
chr6 (72-247)||(33242822-33242998)
chr6 (72-247)||(7415612-7415789)
chr6 (72-247)||(7426559-7426736)
chr6 (72-239)||(7422628-7422797)
chr6 (72-173)||(13886589-13886691)
[»] chr5 (5 HSPs)
chr5 (68-247)||(8123501-8123682)
chr5 (141-247)||(671435-671542)
chr5 (71-198)||(41709523-41709651)
chr5 (72-216)||(24108702-24108848)
chr5 (72-166)||(10321869-10321963)
[»] chr1 (4 HSPs)
chr1 (72-220)||(23405475-23405624)
chr1 (72-247)||(18583886-18584063)
chr1 (137-198)||(13087701-13087763)
chr1 (79-164)||(9893800-9893886)
[»] chr8 (2 HSPs)
chr8 (72-217)||(44761971-44762117)
chr8 (72-217)||(44765278-44765424)
[»] chr2 (3 HSPs)
chr2 (89-220)||(45327421-45327553)
chr2 (72-177)||(31211857-31211963)
chr2 (179-247)||(31211662-31211731)
[»] chr4 (4 HSPs)
chr4 (72-217)||(36050668-36050813)
chr4 (72-217)||(36053927-36054072)
chr4 (72-220)||(27387621-27387770)
chr4 (194-247)||(20441042-20441096)


Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 55211638 - 55211861
Alignment:
Q  20 ccactgccaaactaaacagtagcagaagatgcacaagaagtgttgctgatattgatactacccaatttaagtagggatcacattccataaattagagaaa 119  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||    
T  55211638 ccactgccaaaccaaacagtagcagaagatgcacaacaagtgttgctgatattgatactatccaatttaagtaggaagcacattccataaattagagaaa 55211737  T
Q  120 aactagagataagagagaaataaattcattatatttttcattgattctcataataagacatacaatatttatatagacttgtgcatactcataataagat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||     ||||||||||||||||| ||||||||||||    
T  55211738 aactagagataagagagaaataaattcattatatttttcattgattctcataataaggcatacaa-----atatagacttgtgcatattcataataagat 55211832  T
Q  220 -agtgcaccctaacatactcagtattatc 247  Q
     |||||||||||||||||||| |||||||    
T  55211833 aagtgcaccctaacatactcaatattatc 55211861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 141 - 247
Target Start/End: Complemental strand, 30912135 - 30912028
Alignment:
Q  141 aaattcattatatttttcattgattctcataataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactca 239  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||||||    
T  30912135 aaattcattatatttttcattgattctcataataaggcatacaatacttatatagacttgtgcatactcacaataaaataagtgcaccctaacatactca 30912036  T
Q  240 gtattatc 247  Q
     |||||||    
T  30912035 atattatc 30912028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 72 - 239
Target Start/End: Complemental strand, 36326640 - 36326473
Alignment:
Q  72 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca 169  Q
    |||||| ||||||||  ||||||||||||| |||| || ||||||  | |||||||||| |||||| | | |||||||||||||||||||||||||||||    
T  36326640 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctca 36326542  T
Q  170 taataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactca 239  Q
    ||||||  ||||||||  |||||||||||  ||||||||||||||||  | ||||||||||||||||||||    
T  36326541 taataaagcatacaatgcttatatagact--tgcatactcataataacctaagtgcaccctaacatactca 36326473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 145 - 247
Target Start/End: Complemental strand, 32414816 - 32414709
Alignment:
Q  145 tcattatatttttcattgattctcataataagacatacaatatttatatagac----ttgtgcatactcataataagat-agtgcaccctaacatactca 239  Q
    ||||||||||||| |||||||||| ||||||| |||||||| |||||||||||    ||||||| ||||| |||||||| |||||||| ||||||||| |    
T  32414816 tcattatattttttattgattctcgtaataaggcatacaatgtttatatagacttgtttgtgcaaactcaaaataagataagtgcaccataacatactta 32414717  T
Q  240 gtattatc 247  Q
     |||||||    
T  32414716 atattatc 32414709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 220
Target Start/End: Complemental strand, 14029469 - 14029319
Alignment:
Q  80 cccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca-----taa 172  Q
    |||||||  ||||||||||||| |||| || ||||||  | ||||||||||||| ||| ||  ||||||||||||||||||||||||||| |     |||    
T  14029469 cccaattcgagtagggatcacactccagaatttagagtgagaaactagagataaaaga-aaggaaattcattatatttttcattgattctaaatttctaa 14029371  T
Q  173 t----aagacatacaatatttatatagacttgtgcatactcataataagata 220  Q
    |    |||||||| ||| ||||||||| ||||||||||||||| ||||||||    
T  14029370 tccacaagacatataatgtttatataggcttgtgcatactcattataagata 14029319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 9e-45; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 72 - 247
Target Start/End: Original strand, 42513062 - 42513239
Alignment:
Q  72 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca 169  Q
    |||||| ||||||||  ||||||||||||| |||| |||||||||  | |||||||||| |||||| | | |||||||||||||||||||||||||||||    
T  42513062 tgatacgacccaattcgagtagggatcacactccagaaattagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctca 42513160  T
Q  170 taataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcagtattatc 247  Q
    ||||||  ||||||||  |||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||    
T  42513161 taataaagcatacaatgcttatatagacttgtgcatactcataataagataagtgtaccctaacatactcaatattatc 42513239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 151 - 247
Target Start/End: Complemental strand, 41712364 - 41712267
Alignment:
Q  151 tatttttcattgattctcataataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcagtattatc 247  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||| || |||||||||||||||||| | |||||||    
T  41712364 tatttttcattcattctcataataagacatacaatacttatatagacttgtgcctactcataataaaataagtgcaccctaacatacttaatattatc 41712267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 147 - 247
Target Start/End: Original strand, 38572287 - 38572388
Alignment:
Q  147 attatatttttcattgattctcataataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcagtatta 245  Q
    ||||||||||| ||| |||||||||||||| |||||||| |||||||||||||| ||||| |||||||||||| |||| |||||||| |||||| |||||    
T  38572287 attatattttttattaattctcataataaggcatacaatgtttatatagacttgggcatattcataataagataagtgtaccctaacttactcaatatta 38572386  T
Q  246 tc 247  Q
    ||    
T  38572387 tc 38572388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 239
Target Start/End: Complemental strand, 49017258 - 49017108
Alignment:
Q  91 tagggatcacattccataaattagagaaa--aactagagataagagagaaataaattcattatatttttcattgattctcataataagacatacaatatt 188  Q
    ||||||||||| ||||||||||||||| |  |||||||||||| ||| | | ||||  ||||||||||||||| | |||||||||||| ||||||||  |    
T  49017258 tagggatcacactccataaattagagagagaaactagagataaaagaaaga-aaatatattatatttttcattaagtctcataataaggcatacaatgct 49017160  T
Q  189 tatatagacttgtgcatactcataataagat-agtgcaccctaacatactca 239  Q
    |||| | ||||||| ||| |||||||||||| |||||| | |||||||||||    
T  49017159 tatacaaacttgtggatagtcataataagataagtgcatcataacatactca 49017108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 72 - 220
Target Start/End: Complemental strand, 30456456 - 30456308
Alignment:
Q  72 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca 169  Q
    |||||| ||||||||  ||||||||||||| |||| || ||||||  | |||||||||| |||||| | | |||||||||||||||||||||  |||| |    
T  30456456 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattcgttctaa 30456358  T
Q  170 taataagacatacaatatttatatagacttgtgcatactcataataagata 220  Q
    | ||||| |||| |||  |||||||||||| ||||||||||||||||||||    
T  30456357 tcataaggcatataatgcttatatagactt-tgcatactcataataagata 30456308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 167
Target Start/End: Complemental strand, 6103056 - 6102956
Alignment:
Q  69 tattgatactacccaatttaagtagggatcacattccataaatta-gaga-aaaactagagataagagagaaataaattcattatatttttcattgattc 166  Q
    ||||||||| ||||||||  |||||| |||||| ||||||||||| |||| |||||||||||||| ||  ||| ||||||||||||||||||||||||||    
T  6103056 tattgatacaacccaattcgagtaggaatcacactccataaattaagagagaaaactagagataaaagcaaaaaaaattcattatatttttcattgattc 6102957  T
Q  167 t 167  Q
    |    
T  6102956 t 6102956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 193
Target Start/End: Complemental strand, 11206604 - 11206499
Alignment:
Q  89 agtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctcataataagacatacaata 186  Q
    ||||| ||||||| |||| || ||||||  | |||||||||| |||||| | | |||||||||||||||||||||||||||||||||||| ||||||||     
T  11206604 agtagagatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctcataataaggcatacaatg 11206506  T
Q  187 tttatat 193  Q
    |||||||    
T  11206505 tttatat 11206499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 220
Target Start/End: Complemental strand, 30452847 - 30452703
Alignment:
Q  72 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca 169  Q
    |||||| ||||||||  ||||||||||||| |||| || ||||||  | |||||||||| |||||| | | |||||||||||||||||||||  |||| |    
T  30452847 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattcgttctaa 30452749  T
Q  170 taataagacatacaatatttatatagacttgtgcatactcataataagata 220  Q
    | ||||| |||||||    ||||||||||| ||||||||||||||||||||    
T  30452748 tcataaggcatacaa----tatatagactt-tgcatactcataataagata 30452703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 71 - 247
Target Start/End: Complemental strand, 4834870 - 4834692
Alignment:
Q  71 ttgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctc 168  Q
    ||||||| ||||||||| ||||||||||||| |||| || ||||||  | |||||||||| |||||| | | |||||||||||||||||||||||||||     
T  4834870 ttgatacgacccaatttgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattgattcta 4834772  T
Q  169 ataataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcagtattatc 247  Q
    ||||| || ||||||||  |||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  4834771 ataatgaggcatacaatgcttatatagacttatgcatactcataataagataagtgcaccctaacatactcaatattatc 4834692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 72 - 247
Target Start/End: Complemental strand, 33242998 - 33242822
Alignment:
Q  72 tgatactacccaatttaagtagggatcacattccataaattagagaaa--aactagagataagagagaaataaattcattatatttttcattgattctca 169  Q
    |||||| ||||||||  ||||| ||||||| |||| |||||||||| |  ||||||| |||| ||| ||| |||||||||||||||||||||||||||||    
T  33242998 tgatacgacccaattcgagtagagatcacactccagaaattagagagagaaactagaaataaaaga-aaagaaattcattatatttttcattgattctca 33242900  T
Q  170 taataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcagtattatc 247  Q
    ||||||| ||||||||  |||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||    
T  33242899 taataaggcatacaatgcttatatagacttgtgcatactcataataagataagtgca-cctaacatactcaatattatc 33242822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 247
Target Start/End: Complemental strand, 7415789 - 7415612
Alignment:
Q  72 tgatactacccaatttaagtagggatcacattccataaattagagaaa--aactagagataagagagaaataaattcattatatttttcattgattctca 169  Q
    |||||| | |||| || ||||||||||||| |||| |||||||||| |  ||||||||| |||||| | | |||||||||||||||||||||||||||||    
T  7415789 tgatacgatccaacttgagtagggatcacactccagaaattagagagagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctca 7415691  T
Q  170 taataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcagtattatc 247  Q
    ||||||| ||||||||  |||||||||||| ||  ||||||||||||||| |||||||| ||||||||||| |||||||    
T  7415690 taataaggcatacaatgcttatatagacttatgtgtactcataataagataagtgcaccataacatactcaatattatc 7415612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 247
Target Start/End: Complemental strand, 7426736 - 7426559
Alignment:
Q  72 tgatactacccaatttaagtagggatcacattccataaattaga--gaaaaactagagataagagagaaataaattcattatatttttcattgattctca 169  Q
    |||||| ||||||||  ||||||||||||| |||| ||||||||  || ||| |||||| |||||| | | |||||||||||||||||||||||||||||    
T  7426736 tgatacgacccaattcgagtagggatcacactccagaaattagaaagagaaattagagaaaagagaaaga-aaattcattatatttttcattgattctca 7426638  T
Q  170 taataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcagtattatc 247  Q
    ||||||| |||||||| ||||||||||||| ||  ||||| ||||||||| |||||||| ||||||||||| |||||||    
T  7426637 taataaggcatacaatgtttatatagacttatgtgtactcttaataagataagtgcaccataacatactcaatattatc 7426559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 72 - 239
Target Start/End: Complemental strand, 7422797 - 7422628
Alignment:
Q  72 tgatactacccaatttaagtagggatcacattccataaattagagaaa--aactagagataagagagaaataaattcattatatttttcattgattctca 169  Q
    |||||| ||||||||  ||||||||||||| || | |||||||||| |  ||||||||| |||||| | | |||||||||||||||||||||||||||||    
T  7422797 tgatacgacccaattcgagtagggatcacactcaagaaattagagagagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctca 7422699  T
Q  170 taataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactca 239  Q
    ||||||| ||||||||  |||||||||||| ||  ||||| ||||||||| |||||||| |||||||||||    
T  7422698 taataaggcatacaatgcttatatagacttatgtgtactcttaataagataagtgcaccataacatactca 7422628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 173
Target Start/End: Complemental strand, 13886691 - 13886589
Alignment:
Q  72 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca 169  Q
    |||||| ||||||||| ||||||||||||| |||| || ||||||  | |||||||||| |||||| | | ||||||||||||||||||||||||||| |    
T  13886691 tgatacgacccaatttgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctaa 13886593  T
Q  170 taat 173  Q
    ||||    
T  13886592 taat 13886589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 68 - 247
Target Start/End: Complemental strand, 8123682 - 8123501
Alignment:
Q  68 atattgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgatt 165  Q
    |||||||||| ||||||||  |||| |||||||| | || |||||||||  | ||| || ||| |||||| | | |||||||||||||||||||||||||    
T  8123682 atattgatacgacccaattcgagtatggatcacacttcagaaattagagggagaaattaaagaaaagagaaaga-aaattcattatatttttcattgatt 8123584  T
Q  166 ctcataataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcagtattatc 247  Q
    ||||||||||  ||||||||  |||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||    
T  8123583 ctcataataaagcatacaatgcttatatagacttgtgcatactcataataagataagtgtaccctaacatactcaatattatc 8123501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 141 - 247
Target Start/End: Complemental strand, 671542 - 671435
Alignment:
Q  141 aaattcattatatttttcattgattctcataataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactca 239  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||  ||||||| |||||||||||||||||||||||| |||| |||||||| ||||||    
T  671542 aaattcattatatttttcattaattctcataataaggcatacaatgattatataaacttgtgcatactcataataagataagtgtaccctaacctactca 671443  T
Q  240 gtattatc 247  Q
     |||||||    
T  671442 atattatc 671435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 198
Target Start/End: Complemental strand, 41709651 - 41709523
Alignment:
Q  71 ttgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctc 168  Q
    ||||||| ||||||||  ||||| ||||||| |||| || ||||||  | |||||| ||| |||||| | | ||||||||||||||||||||||||||||    
T  41709651 ttgatacgacccaattcgagtagagatcacactccagaatttagagggagaaactatagaaaagagaaaga-aaattcattatatttttcattgattctc 41709553  T
Q  169 ataataagacatacaatatttatatagact 198  Q
    |||||||| |||||||| ||||||||||||    
T  41709552 ataataaggcatacaatgtttatatagact 41709523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 216
Target Start/End: Complemental strand, 24108848 - 24108702
Alignment:
Q  72 tgatactacccaatttaagtagggatcacattccataaattagagaa--aaactagagataagagagaaataaattcattatatttttcattgattctca 169  Q
    |||||| ||||||||  ||||||||||||| |||| ||||||  |||  |||||||||| || | | ||  |||||||||||||||||||||| |||| |    
T  24108848 tgatacgacccaattcgagtagggatcacactccagaaattaaggaagaaaactagagacaa-acaaaaggaaattcattatatttttcattggttctaa 24108750  T
Q  170 taataagacatacaatatttatatagacttg-tgcatactcataataa 216  Q
    | ||||||||||||||  ||||||||||||| ||||||||||||||||    
T  24108749 tcataagacatacaatgcttatatagacttgttgcatactcataataa 24108702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 10321869 - 10321963
Alignment:
Q  72 tgatactacccaatttaagtagggatcacattccataaatt--agagaaaaactagagataagagagaaataaattcattatatttttcattgattc 166  Q
    |||||| ||||||||| ||||||||||||| ||||||| ||  ||||| || |||||||||||||| ||  ||||||||||| ||||||||||||||    
T  10321869 tgatacgacccaatttgagtagggatcacactccataatttagagagataagctagagataagaga-aaggaaattcattat-tttttcattgattc 10321963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 72 - 220
Target Start/End: Original strand, 23405475 - 23405624
Alignment:
Q  72 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca 169  Q
    |||||| |||||||| |||||||||||||| |||| || ||||||  | |||||||||| |||||| | | |||||||||||||||||||||||||||||    
T  23405475 tgatacgacccaattcaagtagggatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctca 23405573  T
Q  170 taataagacatacaatatttatatagacttgtgcatactcataataagata 220  Q
    ||||||| |||||||| |||| |||||||||||||||| |||| |||||||    
T  23405574 taataaggcatacaatgtttagatagacttgtgcatacacatagtaagata 23405624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 72 - 247
Target Start/End: Original strand, 18583886 - 18584063
Alignment:
Q  72 tgatactacccaatttaagtagggatcacattccataaatta-gaga-aaaactagagataagagagaaataaattcattatatttttcattgattctca 169  Q
    |||||| ||||||||  ||||| ||| ||| |||| |||||| |||| |||||||||||||| ||| ||  ||||||| |||||||||||||||||||||    
T  18583886 tgatacgacccaattcgagtagagattacactccagaaattaagagagaaaactagagataaaaga-aaggaaattcagtatatttttcattgattctca 18583984  T
Q  170 taataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcagtattatc 247  Q
    ||||||  ||||||||  ||||||||||||||||||||| |||||| ||| | |||||||||||||||||| |||||||    
T  18583985 taataaagcatacaatgcttatatagacttgtgcatacttataatacgataactgcaccctaacatactcaatattatc 18584063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 13087763 - 13087701
Alignment:
Q  137 aaataaattcattatattttt-cattgattctcataataagacatacaatatttatatagact 198  Q
    ||||||||||||| ||||||| |||| |||||||||||||| ||||||||| |||||||||||    
T  13087763 aaataaattcattgtattttttcattcattctcataataaggcatacaatacttatatagact 13087701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 164
Target Start/End: Complemental strand, 9893886 - 9893800
Alignment:
Q  79 acccaatttaagtagggatcacattccataaattagagaaa--aactagagataagagagaaataaattcattatatttttcattgat 164  Q
    ||||||||| |||||| |||||| | ||||| |||| ||||  |||||||||| | ||| | | ||||||||||||||||||||||||    
T  9893886 acccaatttgagtaggtatcacactgcataatttagtgaaagaaactagagatgaaagaaaga-aaattcattatatttttcattgat 9893800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 72 - 217
Target Start/End: Complemental strand, 44762117 - 44761971
Alignment:
Q  72 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca 169  Q
    |||||| ||||||||  ||||||||||||| |||| || ||||||  | |||||| ||| |||||| ||| ||||||||||||||||||||||||| |||    
T  44762117 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactatagaaaagagaaaaa-aaattcattatatttttcattgattttca 44762019  T
Q  170 taataagacatacaatatttatatagacttgtgcatactcataataag 217  Q
    ||||||| |||||||| ||||||||||||||||||||| |||| ||||    
T  44762018 taataaggcatacaatgtttatatagacttgtgcatacacatagtaag 44761971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 72 - 217
Target Start/End: Complemental strand, 44765424 - 44765278
Alignment:
Q  72 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca 169  Q
    |||||| ||||||||  ||||||||| ||| |||| || ||||||  | |||||| ||| |||||| | | ||||||||||||||||||||||||| |||    
T  44765424 tgatacgacccaattcgagtagggattacactccagaatttagagggagaaactatagaaaagagaaaga-aaattcattatatttttcattgattttca 44765326  T
Q  170 taataagacatacaatatttatatagacttgtgcatactcataataag 217  Q
    |||||||  ||||||| ||||||||||||||||||||| |||| ||||    
T  44765325 taataaggaatacaatgtttatatagacttgtgcatacacatagtaag 44765278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 89 - 220
Target Start/End: Original strand, 45327421 - 45327553
Alignment:
Q  89 agtagggatcacattccataaatta-gaga-aaaactagagataagagagaaataaattcattatatttttcattgattctcataataagacatacaata 186  Q
    ||||||||||||| |||| |||||| |||| |||| ||||||||| ||| ||| ||||| |||||||||||||||  ||||||||||||||||||||||     
T  45327421 agtagggatcacactccagaaattaagagagaaaattagagataaaaga-aaagaaatttattatatttttcattttttctcataataagacatacaatg 45327519  T
Q  187 tttatatagacttgtgcatactcataataagata 220  Q
     |||||||||||||||||||| |||| |||||||    
T  45327520 cttatatagacttgtgcatacacatagtaagata 45327553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 177
Target Start/End: Complemental strand, 31211963 - 31211857
Alignment:
Q  72 tgatactacccaatttaagtagggatcacattccataaatta-gaga-aaaactagagataagagagaaataaattcattatatttttcattgattctca 169  Q
    |||||| | ||||||  ||||||||||||| |||| |||||| |||| |||||||||||||| ||| | | |||||||||||||||||||||||||||||    
T  31211963 tgatacgatccaattcgagtagggatcacactccagaaattaagagagaaaactagagataaaagaaaga-aaattcattatatttttcattgattctca 31211865  T
Q  170 taataaga 177  Q
    ||||||||    
T  31211864 taataaga 31211857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 31211731 - 31211662
Alignment:
Q  179 atacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcagtattatc 247  Q
    |||||||| |||||||||||| |||||||||||| |||||| ||||||| |||||||||||| |||||||    
T  31211731 atacaatacttatatagacttatgcatactcatattaagataagtgcactctaacatactcaatattatc 31211662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 72 - 217
Target Start/End: Complemental strand, 36050813 - 36050668
Alignment:
Q  72 tgatactacccaatttaagtagggatcacattccataaattaga-ga-aaaactagagataagagagaaataaattcattatatttttcattgattctca 169  Q
    |||||| ||||||||  ||||||||||||| |||| |||||| | || |||||||||||||| ||| ||| |||||||||||||||||||||    ||||    
T  36050813 tgatacgacccaattcgagtagggatcacactccaaaaattaaaagagaaaactagagataaaaga-aaagaaattcattatatttttcatttcc-ctca 36050716  T
Q  170 taataagacatacaatatttatatagacttgtgcatactcataataag 217  Q
    ||||||| |||||||| ||||||||||||||||||||| |||| ||||    
T  36050715 taataaggcatacaatgtttatatagacttgtgcatacacatagtaag 36050668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 72 - 217
Target Start/End: Complemental strand, 36054072 - 36053927
Alignment:
Q  72 tgatactacccaatttaagtagggatcacattccataaattaga-ga-aaaactagagataagagagaaataaattcattatatttttcattgattctca 169  Q
    |||||| ||||||||  ||||||||||||| |||| |||||| | || |||||||||||||| ||| ||| |||||||||||||||||||||    ||||    
T  36054072 tgatacgacccaattcgagtagggatcacactccaaaaattaaaagagaaaactagagataaaaga-aaagaaattcattatatttttcatttcc-ctca 36053975  T
Q  170 taataagacatacaatatttatatagacttgtgcatactcataataag 217  Q
    ||||||| |||||||| ||||||||||||||||||||| |||| ||||    
T  36053974 taataaggcatacaatgtttatatagacttgtgcatacacatagtaag 36053927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 220
Target Start/End: Complemental strand, 27387770 - 27387621
Alignment:
Q  72 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca 169  Q
    |||||| ||||||||  ||||||||||||| |||| || ||||||  | ||||||||||| |  || ||| |||||||||||||||||||||  | || |    
T  27387770 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagatgaagga-aaagaaattcattatatttttcattcctgctaa 27387672  T
Q  170 taataagacatacaatatttatatagacttgtgcatactcataataagata 220  Q
    |||| || ||||||||  |||||||||||||||||| ||| ||||||||||    
T  27387671 taatgaggcatacaatgcttatatagacttgtgcatcctcgtaataagata 27387621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 20441042 - 20441096
Alignment:
Q  194 agacttgtgcatactcataataagat-agtgcaccctaacatactcagtattatc 247  Q
    |||||||||||||||||||||||||| |||||||||| |||| |||| |||||||    
T  20441042 agacttgtgcatactcataataagataagtgcaccctgacatgctcaatattatc 20441096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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