View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_high_75 (Length: 257)
Name: NF6392_high_75
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_high_75 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 31127645 - 31127882
Alignment:
| Q |
1 |
atatggggacccgattgggctgagtttcgacctgagagatggttgagccaagttgatgatggaaagtggagctttattgggatggatccttatagttatg |
100 |
Q |
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| T |
31127645 |
atatggggacccgattgggctgagtttcgacctgagagatggttgagtcaagttgatgatggaaagtggagctttattgggatggatccttatagttatg |
31127744 |
T |
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| Q |
101 |
cggtttttcaggctgggccaagggtgtgtttgggaaaggaaatggcgttcttgcagatgaaaagggtggttgctgggatcatgaggcagtttagggtggt |
200 |
Q |
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| T |
31127745 |
cggtttttcaggctgggccaagggtgtgtttaggaaaggaaatggcgttcttgcagatgaaaagggtggttgccgggatcatgaggcagtttagggtggt |
31127844 |
T |
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| Q |
201 |
tcctgcaatggataaaggggttgagccagagttcgctg |
238 |
Q |
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| T |
31127845 |
tcctgcaatggataaaggggttgagccggagttcgctg |
31127882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 31078327 - 31078558
Alignment:
| Q |
1 |
atatggggacccgattgggctgagtttcgacctgagagatggttgagccaagttgatgatggaaagtggagctttattgggatggatccttatagttatg |
100 |
Q |
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| T |
31078327 |
atatggggacttgattgggctgagtttcgaccggagaggtggttgagtcaagatgaggatgggaagtggagttttattgggatggatccttatagttatg |
31078426 |
T |
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| Q |
101 |
cggtttttcaggctgggccaagggtgtgtttgggaaaggaaatggcgttcttgcagatgaaaagggtggttgctgggatcatgaggcagtttagggtggt |
200 |
Q |
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| T |
31078427 |
cggtttttcaagctgggccgagggtgtgtttaggaaaggaaatggcgttcttgcagatgaagagggtggttgcagggatcatgaggcagtttagggtggt |
31078526 |
T |
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| Q |
201 |
tcctgcaatggataaaggggttgagccagagt |
232 |
Q |
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| T |
31078527 |
tcctgcaatggataaaggggttgagccggagt |
31078558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 31132353 - 31132584
Alignment:
| Q |
1 |
atatggggacccgattgggctgagtttcgacctgagagatggttgagccaagttgatgatggaaagtggagctttattgggatggatccttatagttatg |
100 |
Q |
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| T |
31132353 |
atatggggatccgattgggctgagttttgacctgagaggtggttgagtcgagctgacgatggaaaatggagctttgttgggatggatccttatacttatc |
31132452 |
T |
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| Q |
101 |
cggtttttcaggctgggccaagggtgtgtttgggaaaggaaatggcgttcttgcagatgaa---aagggtggttgctgggatcatgaggcagtttagggt |
197 |
Q |
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| T |
31132453 |
cgatttttcaagctgggccgagggtgtgtttagggaaagaaatggcgttcttagaaatgaagatcaggttggttgttggcattataagggagtttaggtt |
31132552 |
T |
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| Q |
198 |
ggttcctgcaatggataaaggggttgagccag |
229 |
Q |
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| T |
31132553 |
gcttccagcgatggatgaaggggttgaaccag |
31132584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 176
Target Start/End: Original strand, 38642947 - 38643038
Alignment:
| Q |
85 |
gatccttatagttatgcggtttttcaggctgggccaagggtgtgtttgggaaaggaaatggcgttcttgcagatgaaaagggtggttgctgg |
176 |
Q |
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| T |
38642947 |
gatccttttacttatccggtttttcaggctgggccgaggatttgtttggggaaagaaatggcatttatgcaaatgaaaaggattgttgctgg |
38643038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 176
Target Start/End: Original strand, 38655855 - 38655946
Alignment:
| Q |
85 |
gatccttatagttatgcggtttttcaggctgggccaagggtgtgtttgggaaaggaaatggcgttcttgcagatgaaaagggtggttgctgg |
176 |
Q |
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| T |
38655855 |
gatccttttacttatccggtttttcaggctgggccgaggatttgtttggggaaagaaatggcatttatgcaaatgaaaaggattgttgctgg |
38655946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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