View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_high_79 (Length: 247)
Name: NF6392_high_79
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_high_79 |
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| [»] scaffold0771 (2 HSPs) |
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Alignment Details
Target: scaffold0771 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 74 - 242
Target Start/End: Complemental strand, 2340 - 2172
Alignment:
| Q |
74 |
cagatgaatttagatgtttcccacaattcgcgccacaaattacctaccatcaacattcaatgatattcaaagaaatttgagtttaaatattagaagaacg |
173 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2340 |
cagatgaatttagatgtttcccacaattcgcgtcacaaattacctaccatcaacattcaatgatattcaaagaaatttgagtttaaatattagaagaacg |
2241 |
T |
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| Q |
174 |
tgttagaaataaaaacatatatcaaagcttttgtaattggtcatgacatggcttcaaacctttgctact |
242 |
Q |
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|| |||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||| |||| |
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| T |
2240 |
tggtagaaataaaaacagatatcaaagcttttgtaattggtcatgacatggctgcagacctttggtact |
2172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 2440 - 2339
Alignment:
| Q |
22 |
ttgtgttcacatttactttaaaaacat-acctaaggacatgcgaagatgatgacagatgaatttagatgtttcccacaattcgcgccacaaattacctac |
120 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2440 |
ttgtgttcacatttactttaaaaacatcacctaaggacatgcgaagatgatgacagatgaatttagatgtttcccacaattcgcgccacaaattacctac |
2341 |
T |
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| Q |
121 |
ca |
122 |
Q |
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|| |
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| T |
2340 |
ca |
2339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 74 - 242
Target Start/End: Complemental strand, 13950200 - 13950032
Alignment:
| Q |
74 |
cagatgaatttagatgtttcccacaattcgcgccacaaattacctaccatcaacattcaatgatattcaaagaaatttgagtttaaatattagaagaacg |
173 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13950200 |
cagatgaatttagatgtttcccacaattcgcgtcacaaattacctaccatcaacattcaatgatattcaaagaaatttgagtttaaatattagaagaacg |
13950101 |
T |
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| Q |
174 |
tgttagaaataaaaacatatatcaaagcttttgtaattggtcatgacatggcttcaaacctttgctact |
242 |
Q |
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|| |||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||| |||| |
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| T |
13950100 |
tggtagaaataaaaacagatatcaaagcttttgtaattggtcatgacatggctgcagacctttggtact |
13950032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 83 - 227
Target Start/End: Complemental strand, 20900423 - 20900279
Alignment:
| Q |
83 |
ttagatgtttcccacaattcgcgccacaaattacctaccatcaacattcaatgatattcaaagaaatttgagtttaaatattagaagaacgtgttagaaa |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20900423 |
ttagatgtttcccacaattcgcgccacaaattacctaccatcaacattcaatgatattcaaagaaatttgagtttaaatattagaagaacgtgttagaaa |
20900324 |
T |
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| Q |
183 |
taaaaacatatatcaaagcttttgtaattggtcatgacatggctt |
227 |
Q |
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| T |
20900323 |
taaaaacaggtatcaaagcttttgtaataggtaatgacatggctt |
20900279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 13950300 - 13950199
Alignment:
| Q |
22 |
ttgtgttcacatttactttaaaaacat-acctaaggacatgcgaagatgatgacagatgaatttagatgtttcccacaattcgcgccacaaattacctac |
120 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13950300 |
ttgtgttcacatttactttaaaaacatcacctaaggacatgcgaagatgatgacagatgaatttagatgtttcccacaattcgcgccacaaattacctac |
13950201 |
T |
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| Q |
121 |
ca |
122 |
Q |
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|| |
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| T |
13950200 |
ca |
13950199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 20900746 - 20900680
Alignment:
| Q |
22 |
ttgtgttcacatttactttaaaaacat-acctaaggacatgcgaagatgatgacagatgaatttaga |
87 |
Q |
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|||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||||||| ||||| |
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| T |
20900746 |
ttgtgtccacatctactttaaaaacatcacctaaggacatgcaaagatgatgacagatgaacttaga |
20900680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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