View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_high_8 (Length: 604)
Name: NF6392_high_8
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 132 - 445
Target Start/End: Complemental strand, 494721 - 494422
Alignment:
| Q |
132 |
agtgatggaatgtaaaaa-tacatgtgaaatttcagtctccgctaggcctctactacatccactatatttctaatagtacattcttccataagaaatgaa |
230 |
Q |
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| T |
494721 |
agtgatggaatttaaaaaatacatgtgaaatttcagtctccgctaggcctctacta-----------tgtttaata---cattcttccataagaaatgaa |
494636 |
T |
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| Q |
231 |
gcatggattatgatatgtaatactaatattttttcagtccacttgtttttgatgatatggtatcatgaacagctgagttggataaaaataaatttgtcat |
330 |
Q |
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| T |
494635 |
gcatggattatgatatgtaattctaatattttttcagtccacttgtttttgatgatatggtatcatgaacagctgagttggataaaaacaaatttgtcat |
494536 |
T |
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| Q |
331 |
taatcaatacctatgttattatttttgcttttctagtcaccatgttacccatgactcaatatttattattagaagtcaatgctcgagttatgcatgtatg |
430 |
Q |
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||||||||| |||||||||||||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||||| ||||||||||||| |
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| T |
494535 |
taatcaata-ctatgttattatttttgcttttctagtcctcatgttactcatgactcgatgtttattattagaagtcaatgctcgatttatgcatgtatg |
494437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 495177 - 495042
Alignment:
| Q |
1 |
aatcaatctctttaatctaggccttttgacaggcagactacaccgaaaacacaatattttctctgttcaagggggaaattatatttttaaagcattgata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
495177 |
aatcaatctctttaatctaggccttttgacaggcagactacactgattacacattattttctctgttctagggggaaattatatttttaaagcattgata |
495078 |
T |
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| Q |
101 |
taatagt-aattactaataactaatatatcatagtg |
135 |
Q |
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| T |
495077 |
caatagtaaattactaataactaatttatcatagtg |
495042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 525 - 589
Target Start/End: Complemental strand, 494364 - 494300
Alignment:
| Q |
525 |
actttagaatattattttcttgaagcaatacatggaccacaatattacattcgttttataaatag |
589 |
Q |
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||||||||||| ||||||||| |||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
494364 |
actttagaatactattttctttaagcaagacatggacaacaatattacattcgttttataaatag |
494300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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