View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6392_high_82 (Length: 244)

Name: NF6392_high_82
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6392_high_82
NF6392_high_82
[»] chr6 (5 HSPs)
chr6 (18-244)||(31787067-31787299)
chr6 (71-119)||(31787264-31787312)
chr6 (71-119)||(31787387-31787435)
chr6 (209-244)||(31787387-31787422)
chr6 (24-57)||(31787037-31787070)


Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 31787067 - 31787299
Alignment:
Q  18 gtgcttccatagccagttgttccatgacctgttccagtgcctgtcccataagtattttgttcagtaccaggaatcttctccttaatcttgtccataaccc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31787067 gtgcttccatagccagttgttccatgacctgttccagtgcctgtcccataagtattttgttcagtaccaggaatcttctccttaatcttgtccataaccc 31787166  T
Q  118 ctttctctccatgttgttgatgacctacaccactagcaccataaccagttgttccata------tcctgttcctgtccctgtcccatgggtatattgatt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||| |||||||||||    
T  31787167 ctttctctccatgttgttgatgacctacaccactagcaccataaccagttgttccatatcctgttcctgttcctgtccctgtcccatgagtatattgatt 31787266  T
Q  212 ttgatcagtaccaggaattttctccttaatctt 244  Q
    |||||||||||||||||||||||||||||||||    
T  31787267 ttgatcagtaccaggaattttctccttaatctt 31787299  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 31787264 - 31787312
Alignment:
Q  71 attttgttcagtaccaggaatcttctccttaatcttgtccataacccct 119  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||    
T  31787264 attttgatcagtaccaggaattttctccttaatcttgtccataacccct 31787312  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 31787387 - 31787435
Alignment:
Q  71 attttgttcagtaccaggaatcttctccttaatcttgtccataacccct 119  Q
    |||||| |||||||||||||| |||||||||||||||||||| ||||||    
T  31787387 attttgatcagtaccaggaattttctccttaatcttgtccattacccct 31787435  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 244
Target Start/End: Original strand, 31787387 - 31787422
Alignment:
Q  209 attttgatcagtaccaggaattttctccttaatctt 244  Q
    ||||||||||||||||||||||||||||||||||||    
T  31787387 attttgatcagtaccaggaattttctccttaatctt 31787422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 31787037 - 31787070
Alignment:
Q  24 ccatagccagttgttccatgacctgttccagtgc 57  Q
    ||||||||||||||||||||||||||||||||||    
T  31787037 ccatagccagttgttccatgacctgttccagtgc 31787070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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