View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_high_83 (Length: 243)
Name: NF6392_high_83
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_high_83 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 7569074 - 7568832
Alignment:
| Q |
1 |
agcataggctggaaaagcaaagccaaatcataatctataagtggcatgtctagtgttgggtttctaagcctcatattgtagtaaacagttgataatgctg |
100 |
Q |
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| T |
7569074 |
agcataggctggaaaagcaaagccaaatcataatctataagtggcatgtctagtgttgggtttctaagcctcatattgtagtaaacagttgataatgctg |
7568975 |
T |
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| Q |
101 |
cacccataatcatacctgcaattatcaaatcaaagatatgatatattcaagaatccaaaattattattgttatactatatatatgattatcaatcaagaa |
200 |
Q |
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| T |
7568974 |
cacccataatcatacctgcaattatcaaatcaaagatatgatatattcaagaatccaaaattattattgttatactatatatatgattattaatcaagaa |
7568875 |
T |
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| Q |
201 |
tataagccggaccagcaaggtctagcgcaattagttgatgagc |
243 |
Q |
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| T |
7568874 |
tataagccggaccagcaaggtctagcgcaattagctgatgagc |
7568832 |
T |
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Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 33126271 - 33126392
Alignment:
| Q |
1 |
agcataggctggaaaagcaaagccaaatcataatctataagtggcatgtctagtgttgggtttctaagcctcatattgtagtaaacagttgataatgctg |
100 |
Q |
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|||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| || |||||||| |||| |
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| T |
33126271 |
agcataggctggaagagcaaagcaagatcataatctataagtggcatgtctagtgttgggtgtctaagcctcagattgtaatacacagttgacccagctg |
33126370 |
T |
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| Q |
101 |
cacccataatcatacctgcaat |
122 |
Q |
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| T |
33126371 |
ctcctgtaatcatacctgcaat |
33126392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 50748539 - 50748443
Alignment:
| Q |
22 |
gccaaatcataatctataagtggcatgtctagtgttgggtttctaagcctcatattgtagtaaacagttgataatgctgcacccataatcatacctg |
118 |
Q |
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||||||||||| || |||| ||||||||| | ||| || | ||| ||||| | |||||||| |||||||| | ||||||||||| |||||||||| |
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| T |
50748539 |
gccaaatcatagtcaataattggcatgtccaatgtaggatgtctcagcctaaggttgtagtagacagttgacagagctgcacccatgatcatacctg |
50748443 |
T |
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