View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_high_85 (Length: 241)
Name: NF6392_high_85
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_high_85 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 21114845 - 21114619
Alignment:
| Q |
11 |
cagagatggatccactttcgacattacgtaaatatattcaattgtctctaaatagagacgagtgaatatatttaggtagggttggatagtttttaatcac |
110 |
Q |
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| T |
21114845 |
cagagatggatccactttcgaccttacgtaaatatattcaattgtctctaaatagagacgagtgaatatatttaggtagggttggatagtttttaatcac |
21114746 |
T |
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| Q |
111 |
cttgtcccagccaaattgattccaaacaagagacaagtcatccgcaatatgaaaaggaccgttttcatataacaaatttagttcactgacgcaacatgga |
210 |
Q |
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| T |
21114745 |
cttgtcccagccatattgattccaaacaagagacaagtcatccgcaatatgaaaaggaccgttttcataaaacaaagctagttcactgccgcaacctgga |
21114646 |
T |
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| Q |
211 |
cctctagtcaactatataacaaatggg |
237 |
Q |
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|||| ||||||| |||| |||| |||| |
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| T |
21114645 |
cctccagtcaaccatatcacaactggg |
21114619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 237
Target Start/End: Complemental strand, 21124345 - 21124217
Alignment:
| Q |
109 |
accttgtcccagccaaattgattccaaacaagagacaagtcatccgcaatatgaaaaggaccgttttcatataacaaatttagttcactgacgcaacatg |
208 |
Q |
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| T |
21124345 |
accttgtcccaaccataatcattccacacaagagacaagttattggctattttaaaaggaccattctcataaaacaaagctagttcactactgcaacctg |
21124246 |
T |
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| Q |
209 |
gacctctagtcaactatataacaaatggg |
237 |
Q |
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| T |
21124245 |
gacctccagtcaaccatatcacaactggg |
21124217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 237
Target Start/End: Complemental strand, 21144435 - 21144307
Alignment:
| Q |
109 |
accttgtcccagccaaattgattccaaacaagagacaagtcatccgcaatatgaaaaggaccgttttcatataacaaatttagttcactgacgcaacatg |
208 |
Q |
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| T |
21144435 |
accttgtcccaaccataatcattccacacaagagacaagttattggctattttaaaaggaccattctcataaaacaaagctagttcactactgcaacctg |
21144336 |
T |
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| Q |
209 |
gacctctagtcaactatataacaaatggg |
237 |
Q |
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|||||| ||||||| |||| |||| |||| |
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| T |
21144335 |
gacctccagtcaaccatatcacaactggg |
21144307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 21149619 - 21149542
Alignment:
| Q |
109 |
accttgtcccagccaaattgattccaaacaagagacaagtcatccgcaatatgaaaaggaccgttttcatataacaaa |
186 |
Q |
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||||| ||||||||| | | |||||| ||||||||||||| || ||||| | |||||||||||| ||||| |||||| |
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| T |
21149619 |
accttatcccagccatagtcattccatacaagagacaagttattggcaattttaaaaggaccgttctcataaaacaaa |
21149542 |
T |
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