View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6392_high_86 (Length: 240)
Name: NF6392_high_86
Description: NF6392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6392_high_86 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 5230523 - 5230307
Alignment:
| Q |
1 |
cattttccattagcaacattgcattcttctggatcaaaatcaaacctatcatcaatccatgaggcatttaaaacaacatcctcaatttttctgtcatctg |
100 |
Q |
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| T |
5230523 |
cattttccattagcaacattgcattcttctggatcaaaatcaaacctatcatcaatccatgaggcatttaaaaccacatcctcaatttttctgtcatctg |
5230424 |
T |
|
| Q |
101 |
ttgaaaaattacattatcaagagtcaaattggtaaagcnnnnnnnnnnnnnnnnnnnggaaagtagaatgagaatatgatgagatagttttggtgcattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5230423 |
ttgaaaaattacattatcaagagtcaaattggtaaagc-----aaaaagaaaaaaaaggaaagtagaatgagaatatgatgagatagttttggtgcattt |
5230329 |
T |
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| Q |
201 |
gcgaagctaattacgcactccc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
5230328 |
gcgaagctaattacgcactccc |
5230307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 25338284 - 25338224
Alignment:
| Q |
1 |
cattttccattagcaacattgcattcttctggatcaaaatcaaacctatcatcaatccatg |
61 |
Q |
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||||||||||| |||| ||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
25338284 |
cattttccattggcaatgttgcattcttctgagtcaaaatcaaacctgtcatcaatccatg |
25338224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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